cdh6 (LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409)


Basic Information

Item Value
gene id cdh6
gene name LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1887750 ~ 1935629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941232.2
GATGAGGCGCACGAGCGGCACTCGCGCGACACTTTTCTCTCGCCCAGTCAACGGATTCACACAGGCGAGTAACGGTCAGTGTAACGGACACCGGGCTCGTGAGCACCGCCACACGGTGACGCTTCCCCTTTGAGCCGGCACGCAGGACTATGAGGGTGGCAGCAATCTCCACTCTACAGAGCTTTAACCTGGGCAGATAGGACGACAGAAGACAATATGAGGACTTATATGACGGCGTTCCTGTTATGGGCGTGGGCGGCCCACTGCGCGGACGCCATGACGCTTTTAAGAGGAAAGGAAGTATCACGGCGAGAGAGGAACTTGGAGACTCTGAAGCGCTCCAAGAGAGGATGGATGTGGAAGCAGTTCTTTCTGCAGGAGGAGTACACCGGCACTGATTATCAGTACATCGGCAAGCTTCACTCCGATATGGATCGAGGAGACGGCGCGGTGATGTATGTCCTGACGGGCGAAGGTGCCGGGACCGTCTTCGTGATAGATGCAAACTCGGGCGATCTGCATGCTACGCGGAGCCTGGACAGAGAAGAGAAGCCATCCTACACGCTCCGAGCTCAAGCTGTCAACAAGAAGAACGGCCAGCCCTTAGAACCCGAGACCGAGTTCATCGTCAAACTCCACGACATCAACGACAACGAGCCCAAGTTTGAGAAGGAGGTTTACACAGCTAGCGTCCCCGAGAGGTCGCACATCGgAACTTCGGTTATTCAGGTGACGGCCCACGACGCAGACGACGAGATGTTCGGCTTGAGCGCAAAACTGGTGTACAGCATCAGTCAGGGTCACCCGTACTTCTCCGTCGAGTCAAACACAGGCATAATCCGGACTGCCTTAGGGCCCTCGGACATGGACAGAGAGCAGAGGGAGCATTACCAGGTAGTGATCGAAGCCAAGGACATGGCGGGCCAGAGAGGCGGCTTAACGGGCTCCACTATAGTCAACATCACCCTGACTGATGTGAACGACAATCCTCCTCAGTTTGCACAGAGTGTGTATCAGTTCAGCGTTCCCGAGCTGAGCGAGCCCGGCACCGAGGTGGGTCAGGTTCGAGCCTTAGACGCCGACATCGGGCCGAACGCCGAGATGGACTACACGGTGGTGGGCGGAGACGGCCTGGAcgttttctctgtaacagctGACAAAACCACACAGAATGGCATCCTCAGCGTCAGAAAGCCTCTCGATTACGAGAAAAAGAAGTCGTACACGCTGCAGGTGCAGGTGCGCAACACACACCCGGACCCGCGCTTCGTCAGCGTGGACGCTAAAGACCTGACTACGGTGCGGATAAACGTGGAGGACGTCGACGAGCCTCCGAGATTCGAGCGTCCCAGTTACGTGATGGAGGTGAAAGAGGACGCGGCTGTGGGCACCGCCATCGGGTCGGTCAGCGCCGTGGATCAGGACGCGCGCCGCAACCCGGTCAAGTACACAATTGATCGGCACACAGACGTGGACCGGATATTTAACGTGCACGCTGGGAACGGGTCTATATTCCTGCAGAAGCCTCTTGACCGAGAAGACCTTGCGTGGCACAATATTTCTGTGATCGCAGCCGAGTTCAATAACCCCCAGCAGACGAGTCGAGTGCCCGTGTACATCCGTGTACTGGATGTGAACGATAACCCGCCAGCGCTGGCCTCCTTCTACGAGACGTTCGTGTGTGAAAACGCTAAATCTGGTCAGAAAATCCAAACGATAACGGCGGTGGATCAGGACGAGCCGTCAGGCGGCCACCGCTTCTTCTTCATGCTGGCACCGGAGAGCTCGGTGAAGGCCAACTTCTCAGTGCGAGACAACGGAGACAACACCGCGGGCATCTACACACGACGAACGGGTTTCCGGCGGGCGCAGAAAAGCACGCACCTGGTTGCCGTGGTGATTTCAGACAGCGACTCCCCCATGATGAGCAGCACAGGTACGCTGACGGTGCGCGTGTGTACCTGCGACCGAGACGGAAACATGGAGATGTGCAGCGCTGAGGCTCTGAGCGGCACGGCCGGACTCAGCACTGGCGCGCTGGTGGCTATTCTACTCTGCGTACTCATCCTGCTCCtgATTGTTGTGCTGTTTGCTGCTCTGAAGCgccagaagaagaaggaacCCCTGATCATCTCTAAAGAGGACGTCAGGGACAACGTGGTGAGCTATAACGACGAGGGCGGCGGCGAGGAGGACACGCAGGCGTTCGACATCGGAGCTCTGCGCCACCCGGAGGTCATGGAGGAAAGCAGCAAACTGAGACGCGACGTCGTGCCGTCCGATCCGCCGTACCCACCGCCTCCTCTGCGCCGGACAGCCGTGACATCCCGAGACAACTCGGACGTGAGGAACTTCATCACGCAGCGCGTTCAGGAGCACGACAGCAGCCCTGTAGCGCCGCCCTATGACTCTCTAGCCACCTACGCCTACGAGGGTGAGGGCTCGGTCGCCGAATCGCTCAGTTCGCTCGGCTCGGGATCGTCCGAATCACCGCACGACTACAGCTACCTGAACGAGTGGGGGCCGCGCTTCAGAAAGCTCGCCGATATGTACGGGGCCGACGAGATCGAATGGGACTCCTAACACGTCTCAGCTTCCTCAAAATGGAATTCTTACAAAGCGTTGTATTTCTTACAAAGTGGAATTCTTACAAAGTGCCCTTCTCCTTCGCCCCAACTCGATCCAGCAGACAGGAAGACGTCTCACAGATGCTGATCTTCTGCAAAGTAGACGCTTTAAAACACGGAGTCGTAACGTAACTTGTTGACTTCTGCAGCTCTTTGGAATGAAAGTTGTCACGGCGAGGCATATTTTTCGGATAATCTCACGTGAAAACTGACATTACTGAAATAGGAAGGGCGCGGAATACGGATCGTTTCTGGACTCCTTCCTGAGAAACGCCTGAGCGTGAAACACCAACCGGTTCATGAAGGACCAAACTTTTAGCGACGTGTCTGTGGAACGTGGAGCTACAGTGCGAGAACAGCCAGCTCACACTCCACTGCAGCGTCGTCTATGTTAGCAGGCATTAACGATCCTGGAGCTCTGATTAGCTGAGCGTCAATCATCtgtatgctttttcttttttttttttcttttctttttttttttgacttttcagTATTACTTTTGATGTACATACATCTGTCAGTGCTTTCCGAGCAGACATGGTGCTTCAGAAATTTGGGTCGGGTAAAAGGTGTTTTCGTGATTGGCACTCGTTTTCATCATCTACTGGAGAAAATGCCAGAAGCTTCCAATTATCTACTCGCTCATAGGCAGGAAATGTGACTCGCATTTTGGCACACGTCTCAACTACATCCCACCATCTTGCATTCCCTTACACGAGAAGCCTATTTACAAAATCACCTCGtgctaaacaaaaaaattacatgcgTTCATTTCCAAGAGCGTCCTACCAGTTCTattttttaagaagaaaattGACAGAAATATCAATCCGTGTCCTTTTTCGAACATCCAAATCTACGAGTTTTACTCACGCGTGTGCTATGCGTGCTAATAACCACATCCCTGCACTGTTCGTCTCCTcttctgtgctgtttttgttaGTAATAAAAAACCCCCAGATGATTCATCCCCTCTCTGAATGATAATCGCAGCGGTCCGATGTTGAGTTATGACTAGGATGTTAAAATAAATCACCGCCCTTATATTTTTGCCCTCTGCGCCAGCCACGAAAATGAGTCTGGAATTGCATTCGCCGCCTCCGTTATCGAGGGGATGAAAAGaggttattttttaaagaatatacaTATGATTGTAGTCGGCTTCCAAGCAGCGGGTAAATATTTGTGGTTTAGGCGCTCAGAGTTCACCTGCAATATTCCCGTGCTTTGTCAGTGgtatactgtaaaataaaggtGATGCTAACccatgttgtaaaaaaaaaaaaaaaatgtggttttatgAAACAGTGCGTCGTCGCAGTGG
>XM_034314849.1
CAGAAGAGAGGCGTCACTCATAAGGAGGgcgaggaggatgaggaggaagaggaggaagagagaacgGACGTCCACGGCATCGGAAATCACGTGTGCTACATTTCAGCAGAGACACACGGTGACGCTTCCCCTTTGAGCCGGCACGCAGGACTATGAGGGTGGCAGCAATCTCCACTCTACAGAGCTTTAACCTGGGCAGATAGGACGACAGAAGACAATATGAGGACTTATATGACGGCGTTCCTGTTATGGGCGTGGGCGGCCCACTGCGCGGACGCCATGACGCTTTTAAGAGGAAAGGAAGTATCACGGCGAGAGAGGAACTTGGAGACTCTGAAGCGCTCCAAGAGAGGATGGATGTGGAAGCAGTTCTTTCTGCAGGAGGAGTACACCGGCACTGATTATCAGTACATCGGCAAGCTTCACTCCGATATGGATCGAGGAGACGGCGCGGTGATGTATGTCCTGACGGGCGAAGGTGCCGGGACCGTCTTCGTGATAGATGCAAACTCGGGCGATCTGCATGCTACGCGGAGCCTGGACAGAGAAGAGAAGCCATCCTACACGCTCCGAGCTCAAGCTGTCAACAAGAAGAACGGCCAGCCCTTAGAACCCGAGACCGAGTTCATCGTCAAACTCCACGACATCAACGACAACGAGCCCAAGTTTGAGAAGGAGGTTTACACAGCTAGCGTCCCCGAGAGGTCGCACATCGgAACTTCGGTTATTCAGGTGACGGCCCACGACGCAGACGACGAGATGTTCGGCTTGAGCGCAAAACTGGTGTACAGCATCAGTCAGGGTCACCCGTACTTCTCCGTCGAGTCAAACACAGGCATAATCCGGACTGCCTTAGGGCCCTCGGACATGGACAGAGAGCAGAGGGAGCATTACCAGGTAGTGATCGAAGCCAAGGACATGGCGGGCCAGAGAGGCGGCTTAACGGGCTCCACTATAGTCAACATCACCCTGACTGATGTGAACGACAATCCTCCTCAGTTTGCACAGAGTGTGTATCAGTTCAGCGTTCCCGAGCTGAGCGAGCCCGGCACCGAGGTGGGTCAGGTTCGAGCCTTAGACGCCGACATCGGGCCGAACGCCGAGATGGACTACACGGTGGTGGGCGGAGACGGCCTGGAcgttttctctgtaacagctGACAAAACCACACAGAATGGCATCCTCAGCGTCAGAAAGCCTCTCGATTACGAGAAAAAGAAGTCGTACACGCTGCAGGTGCAGGTGCGCAACACACACCCGGACCCGCGCTTCGTCAGCGTGGACGCTAAAGACCTGACTACGGTGCGGATAAACGTGGAGGACGTCGACGAGCCTCCGAGATTCGAGCGTCCCAGTTACGTGATGGAGGTGAAAGAGGACGCGGCTGTGGGCACCGCCATCGGGTCGGTCAGCGCCGTGGATCAGGACGCGCGCCGCAACCCGGTCAAGTACACAATTGATCGGCACACAGACGTGGACCGGATATTTAACGTGCACGCTGGGAACGGGTCTATATTCCTGCAGAAGCCTCTTGACCGAGAAGACCTTGCGTGGCACAATATTTCTGTGATCGCAGCCGAGTTCAATAACCCCCAGCAGACGAGTCGAGTGCCCGTGTACATCCGTGTACTGGATGTGAACGATAACCCGCCAGCGCTGGCCTCCTTCTACGAGACGTTCGTGTGTGAAAACGCTAAATCTGGTCAGAAAATCCAAACGATAACGGCGGTGGATCAGGACGAGCCGTCAGGCGGCCACCGCTTCTTCTTCATGCTGGCACCGGAGAGCTCGGTGAAGGCCAACTTCTCAGTGCGAGACAACGGAGACAACACCGCGGGCATCTACACACGACGAACGGGTTTCCGGCGGGCGCAGAAAAGCACGCACCTGGTTGCCGTGGTGATTTCAGACAGCGACTCCCCCATGATGAGCAGCACAGGTACGCTGACGGTGCGCGTGTGTACCTGCGACCGAGACGGAAACATGGAGATGTGCAGCGCTGAGGCTCTGAGCGGCACGGCCGGACTCAGCACTGGCGCGCTGGTGGCTATTCTACTCTGCGTACTCATCCTGCTCCtgATTGTTGTGCTGTTTGCTGCTCTGAAGCgccagaagaagaaggaacCCCTGATCATCTCTAAAGAGGACGTCAGGGACAACGTGGTGAGCTATAACGACGAGGGCGGCGGCGAGGAGGACACGCAGGCGTTCGACATCGGAGCTCTGCGCCACCCGGAGGTCATGGAGGAAAGCAGCAAACTGAGACGCGACGTCGTGCCGTCCGATCCGCCGTACCCACCGCCTCCTCTGCGCCGGACAGCCGTGACATCCCGAGACAACTCGGACGTGAGGAACTTCATCACGCAGCGCGTTCAGGAGCACGACAGCAGCCCTGTAGCGCCGCCCTATGACTCTCTAGCCACCTACGCCTACGAGGGTGAGGGCTCGGTCGCCGAATCGCTCAGTTCGCTCGGCTCGGGATCGTCCGAATCACCGCACGACTACAGCTACCTGAACGAGTGGGGGCCGCGCTTCAGAAAGCTCGCCGATATGTACGGGGCCGACGAGATCGAATGGGACTCCTAACACGTCTCAGCTTCCTCAAAATGGAATTCTTACAAAGCGTTGTATTTCTTACAAAGTGGAATTCTTACAAAGTGCCCTTCTCCTTCGCCCCAACTCGATCCAGCAGACAGGAAGACGTCTCACAGATGCTGATCTTCTGCAAAGTAGACGCTTTAAAACACGGAGTCGTAACGTAACTTGTTGACTTCTGCAGCTCTTTGGAATGAAAGTTGTCACGGCGAGGCATATTTTTCGGATAATCTCACGTGAAAACTGACATTACTGAAATAGGAAGGGCGCGGAATACGGATCGTTTCTGGACTCCTTCCTGAGAAACGCCTGAGCGTGAAACACCAACCGGTTCATGAAGGACCAAACTTTTAGCGACGTGTCTGTGGAACGTGGAGCTACAGTGCGAGAACAGCCAGCTCACACTCCACTGCAGCGTCGTCTATGTTAGCAGGCATTAACGATCCTGGAGCTCTGATTAGCTGAGCGTCAATCATCtgtatgctttttcttttttttttttcttttctttttttttttgacttttcagTATTACTTTTGATGTACATACATCTGTCAGTGCTTTCCGAGCAGACATGGTGCTTCAGAAATTTGGGTCGGGTAAAAGGTGTTTTCGTGATTGGCACTCGTTTTCATCATCTACTGGAGAAAATGCCAGAAGCTTCCAATTATCTACTCGCTCATAGGCAGGAAATGTGACTCGCATTTTGGCACACGTCTCAACTACATCCCACCATCTTGCATTCCCTTACACGAGAAGCCTATTTACAAAATCACCTCGtgctaaacaaaaaaattacatgcgTTCATTTCCAAGAGCGTCCTACCAGTTCTattttttaagaagaaaattGACAGAAATATCAATCCGTGTCCTTTTTCGAACATCCAAATCTACGAGTTTTACTCACGCGTGTGCTATGCGTGCTAATAACCACATCCCTGCACTGTTCGTCTCCTcttctgtgctgtttttgttaGTAATAAAAAACCCCCAGATGATTCATCCCCTCTCTGAATGATAATCGCAGCGGTCCGATGTTGAGTTATGACTAGGATGTTAAAATAAATCACCGCCCTTATATTTTTGCCCTCTGCGCCAGCCACGAAAATGAGTCTGGAATTGCATTCGCCGCCTCCGTTATCGAGGGGATGAAAAGaggttattttttaaagaatatacaTATGATTGTAGTCGGCTTCCAAGCAGCGGGTAAATATTTGTGGTTTAGGCGCTCAGAGTTCACCTGCAATATTCCCGTGCTTTGTCAGTGgtatactgtaaaataaaggtGATGCTAACccatgttgtaaaaaaaaaaaaaaaatgtggttttatgAAACAGTGCGTCGTCGCAGTGG

Function

NR:

description
cadherin-6-like

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941232.2 False 3954 mRNA 0.53 12 1902301 1935629
XM_034314849.1 True 3957 mRNA 0.53 12 1887750 1935629

Neighbor

gene id symbol gene type direction distance location
cahz cahz coding upstream 530268 1351263 ~ 1357482 (+)
cnpy1 cnpy1,LOC108435706 coding upstream 821283 1053868 ~ 1066467 (+)
shhb LOC108280234 coding upstream 875558 1003909 ~ 1012192 (+)
trpa1a LOC108280835,LOC108435699 coding upstream 922133 946792 ~ 965617 (+)
tmem70 tmem70 coding upstream 986126 898058 ~ 901624 (+)
zgc:163121 LOC108280641,LOC108432257 coding downstream 47687 1983316 ~ 2018166 (+)
LOC113543213 rnf31,LOC108432260 coding downstream 106571 2042200 ~ 2060017 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding downstream 133732 2069361 ~ 2116180 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding downstream 211646 2147275 ~ 2168213 (+)
urod urod,LOC107729049,LOC107679325,LOC107714848,LOC107674254 coding downstream 233419 2169048 ~ 2176365 (+)
LOC113543035 NA non-coding upstream 225557 1624563 ~ 1662193 (+)
G312877 NA non-coding upstream 365239 1522301 ~ 1522511 (+)
LOC117599969 NA non-coding upstream 517059 1363376 ~ 1370691 (+)
LOC117599954 NA non-coding upstream 783426 1089858 ~ 1104324 (+)
LOC117599981 NA non-coding upstream 907699 976621 ~ 980051 (+)
G313053 NA non-coding downstream 38470 1974099 ~ 1976715 (+)
G313052 NA non-coding downstream 180695 2116324 ~ 2123434 (+)
G313443 NA non-coding downstream 738804 2674433 ~ 2674646 (+)
LOC117599939 NA non-coding downstream 795586 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 799490 2735119 ~ 2735384 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 740374 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 1040733 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 1170459 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 1386361 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 1568788 274822 ~ 318962 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 30111 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 197521 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 246350 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 719571 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 739652 2675281 ~ 2675848 (+)

Expression


Co-expression Network