nt5c3a (nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420)


Basic Information

Item Value
gene id nt5c3a
gene name nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3647747 ~ 3662687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941244.2
CGCGGTGGGCGTGGCCATGTGAAcgcaggaagaagaagaagcagcgtATATGACTTCTCTATAGCAGCATCGACATTGTGTTATGGATAAAACCGCCGTGGTTAAAGTCGGGGCGGTGGCtagtgcgagtgtgtgtgcccTTTTTGGAGGAGTCGTCCTCGCTCAGTATATTGTGGCCAAGAAGAAAAGAGCTGGCAAGAAAACGAAGATCATCGAAATGATGCCCGAGTTTGAGAAGAGCACGGTCCACATCAAGGACCCCGAGCGGGTGGAGCAGATCATCTGCGGTCTGATTAAAGGAGGCGCTTCCAAACTACAGatcaTCACAGACTTTGACATGACGTTAAGCAAATTTGCAATCAATGGAAAACGCTGCCCGACCTGCCACAATATAATTGACAACTGCAAGCTAGTCACAGACGAATGTAGGCAAAAGctgtataAACTGAAGGACACATACTATCCTATAGAGATCGACCCACATCTGACCATTGAGGAGAAATACCCGTTTATGGTGGAGTGGTATTTTAAATCTCACACATTACTAGTGGAGCAGCGATTACAGAAGGACAAACTCCCCGAGGTGGTGAGAGAATCGGACGTCTGTTTACGggaggGTTACGAGCACTTCTTTGACCGGCTGCATAAGCACAGTGTTCCTGTGTTCATCTTTTCGGCGGGGCTGGGAGACGTGCTGGAGGAGATCATCAGACAGGCTGGTGTTTATCACCCCAACGTCAAAGTTGTCTCTAACTTCATGGACTTTGATGAGAACGGCATCCTGAAAGGCTTTAAAGGCGAGCTGATTCACGTGTACAACAAGCACGACGGCGCGCTGAGGAACACCGACTACTTCAAACAGCTGAAGGACAACAGCAACATCATCCTTCTGGGAGACTCACTCGGAGACCTCAACATGGCAGACGGCGTCCCCAACGTAGAGAACCTCCTGAAGATCGGCTTTCTCAACGATAAGGTGGACGAGCGCTTGGAGAAATACTTGGACTCTTATGATATTGTTCTAGTGAAGGATGAAACCCTTGAAGTGCCCAATTCCATTTTACAGAAGATCTTATAACTGTAAAGACTCTCATTATTGGATTAGTAGTCACTGAGCTAACACATGCACGCACAAGCCATACAAACCCCTCACCGCAATCTGTTATCATCACTTCCCATCCTAGACAATGTCCTCTTCCATTCGTGTGTCTGTTTGTGGTTTGTTCcgttatttctattttttagtAAAGAAAAACCAAACCAACTGTCTCTATA
>XM_026941245.2
TGTCATCTGACAGAGGGAATtttctttccttgtttttcACGAAGCTGCAACAACACAGGAGAGATGCCCGAGTTTGAGAAGAGCACGGTCCACATCAAGGACCCCGAGCGGGTGGAGCAGATCATCTGCGGTCTGATTAAAGGAGGCGCTTCCAAACTACAGatcaTCACAGACTTTGACATGACGTTAAGCAAATTTGCAATCAATGGAAAACGCTGCCCGACCTGCCACAATATAATTGACAACTGCAAGCTAGTCACAGACGAATGTAGGCAAAAGctgtataAACTGAAGGACACATACTATCCTATAGAGATCGACCCACATCTGACCATTGAGGAGAAATACCCGTTTATGGTGGAGTGGTATTTTAAATCTCACACATTACTAGTGGAGCAGCGATTACAGAAGGACAAACTCCCCGAGGTGGTGAGAGAATCGGACGTCTGTTTACGggaggGTTACGAGCACTTCTTTGACCGGCTGCATAAGCACAGTGTTCCTGTGTTCATCTTTTCGGCGGGGCTGGGAGACGTGCTGGAGGAGATCATCAGACAGGCTGGTGTTTATCACCCCAACGTCAAAGTTGTCTCTAACTTCATGGACTTTGATGAGAACGGCATCCTGAAAGGCTTTAAAGGCGAGCTGATTCACGTGTACAACAAGCACGACGGCGCGCTGAGGAACACCGACTACTTCAAACAGCTGAAGGACAACAGCAACATCATCCTTCTGGGAGACTCACTCGGAGACCTCAACATGGCAGACGGCGTCCCCAACGTAGAGAACCTCCTGAAGATCGGCTTTCTCAACGATAAGGTGGACGAGCGCTTGGAGAAATACTTGGACTCTTATGATATTGTTCTAGTGAAGGATGAAACCCTTGAAGTGCCCAATTCCATTTTACAGAAGATCTTATAACTGTAAAGACTCTCATTATTGGATTAGTAGTCACTGAGCTAACACATGCACGCACAAGCCATACAAACCCCTCACCGCAATCTGTTATCATCACTTCCCATCCTAGACAATGTCCTCTTCCATTCGTGTGTCTGTTTGTGGTTTGTTCcgttatttctattttttagtAAAGAAAAACCAAACCAACTGTCTCTATA

Function

symbol description
nt5c3a Predicted to enable 5'-nucleotidase activity. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in brain; myotome; and yolk syncytial layer. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA).

NR:

description
PREDICTED: cytosolic 5'-nucleotidase 3A isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K24242 NT5C3; cytosolic 5'-nucleotidase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941244.2 True 1275 mRNA 0.47 9 3647747 3662687
XM_026941245.2 False 1118 mRNA 0.46 9 3656034 3662687

Neighbor

gene id symbol gene type direction distance location
LOC113543357 NA coding upstream 1075 3642315 ~ 3646672 (+)
trnas-aga_16 NA coding upstream 19634 3628032 ~ 3628113 (+)
trnas-aga_14 NA coding upstream 21717 3625960 ~ 3626030 (+)
trnas-aga_13 NA coding upstream 22250 3625416 ~ 3625497 (+)
atg5 atg5,LOC107697282 coding upstream 124534 3502067 ~ 3523213 (+)
pmvk pmvk coding downstream 150566 3813253 ~ 3816854 (+)
trnap-ugg_21 NA coding downstream 284248 3946935 ~ 3947006 (+)
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding downstream 300068 3962755 ~ 3968351 (+)
LOC113543359 LOC108280252 coding downstream 512106 4174793 ~ 4183429 (+)
igsf10 igsf10 coding downstream 562811 4225498 ~ 4238706 (+)
G313853 NA non-coding upstream 123229 3524309 ~ 3524518 (+)
G313796 NA non-coding upstream 348441 3299098 ~ 3299306 (+)
G313607 NA non-coding upstream 571377 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 702540 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 858251 2789242 ~ 2789496 (+)
G313949 NA non-coding downstream 110383 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 144461 3807148 ~ 3808690 (+)
G313990 NA non-coding downstream 183170 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 225340 3888027 ~ 3895685 (+)
G314222 NA non-coding downstream 333815 3996502 ~ 4000314 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 158380 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 758359 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 971899 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 985348 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1462070 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 929753 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1125161 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1238783 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1425152 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1538334 5201021 ~ 5216591 (+)

Expression


Co-expression Network