lrrc6 (lrrc6,LOC108280282)


Basic Information

Item Value
gene id lrrc6
gene name lrrc6,LOC108280282
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7859024 ~ 7881717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941263.2
AGTGTGTGAAAAACAGttcaaatcaacaaatcaattAGCCGCTACAACTACACGCGCCTGCTCTCTTCTTCTTTGGGGTTTTACGTCGATTCAGGAGTTGGGCGCATTACCGCCACCAACTGAGCTGGAGTGTGGGGCCGGCATGAATCAATCTCTCtcccttccctccctctctgcaTTTACAGCGTTCACTAGACGAGCCTATCAAGAGGGACTTACACAAGGGCTTGAACTGAAAACTTCAGTGGGATATTTTGaaattagctgcattaaaaGGCGGCGATAAACaccactgaaaaacacacagaaagccGAGCCTATTTCGTACTTCCGCAATACACGTTCCCATAGTAACGCTTCACAAACTCAAGCATGGTGCGCATCAGTGAAGATCTCATCCGCCGTCGTGCTGAGCACAACAACTGTGAGATCTTTTCTCTGGAGGAGATTTCATTACATCAGCAGGACATTGAACGTATAGAGTACATTGACAGGTGGTGCCGAGACCTGAAAATCCTCTATTTGCAAAACAACCTAATTTCCAAGATAGagAATGTTGGTAGACTGAAGAAGTTGGAGTATCTGAATCTGGCACTGAATAACATTGAAGTGATTGAAAATTTGGAAGGTTGCGAAGATCTTCAGAAGCTTGACCTGACTGTGAATTTTGTTGGTCGATTGAGCAGTGTGGAGTCTCTGAAACAGAATGTGCACCTCCGGGAGCTTTTTCTTGTGGGAAATCCCTGCACTGAGTTTAAGGGTTACAGGCAGTATGTGCTGGCCTGCCTGCCTCAACTTCAGTGGCTAGATGGCACAGCAATAGGGCGAGCAGAACGGATACAGGCACTGCAAAACTTTGATGACTTGAAGAAGTGTGTCTTAGAACAAGAGGCTGAATATgtggaaaggagagagaaacagaagaggGAGGGGCTAAAAGAAAACTCAAGCAGCAACCCACAAGATTTAGATCACAAGCGTCTCCCGAGGAACGACTCTCAGATAACCAAGGAGAACACGAACCAAGACCCAAATCTTGAGTGCCATCCAAATCAGAATTCAAACTCAGAGGATGAGGAGAATGATTTTTGGGAAAAGCCATGTGCCTTTACTCCAGAGTCAAGACTGGAGGCACATCGCCATctagaggagaagaggagaacaAAAGAGAGACTGAGagAGCCAAAGAGGAAGGATAAACCTCCCAGAACTCTGATCACATCTGATGGAAGAGTGCTGAACATGAATGAACCAAAGTTGGATTTTACTCTaagtgaagatgaagaaaacaaCTGTGTACTTTTGGATCTGCATGTATACAGGCATTTGGACACCTCTTTGCTGCATGTGGATATTCAGCCTACATACGTGAGGGTGACTGTCAAAGGAAAGGTGTTCCAGTTGGTTTTGCCTGATGAGGTTAAACCAGATAGCAGCACAGCTCAGAGATCTCAAACTACTGGCCACCTGCTTATCACCATGCTCAAGttgcATGGAGaggtaaaagtaaaaaaagcaaCTCATAAACTGACCAATGGTTCCTGCAGAGGAAATGGGACTTCAGAGACCTCAAAGGAAAAGGGCAGGGCGATCTCTGGTTGTCAGAGATTAGAAGTTGACCCCAGCAAAAGCTTTGCTGTACAACTGGCCAACATTGTCCCTAAAGAAGACCACACTACCCATGGTCCCCTGCAGCTCTCCTGGCCCTGTAGAGCCCAAGAGAAGCCTGTGTCCAAAGACTTTGTGGATGACCCCGAAGTGCCCCCCTCTCATGTGAGAAACACAAAGAATGGAAGAATGTGAGAGAATACATGTACAACTGTGAAAATACAGTACATGACAGCAGTTATAAATTACAGTTTTGGGGaattttgttattcttttggATGCATGTGAAGATATGGACTTCACAGGGTGTTCTTGGGTTTCTTCCtatcttttactttttattgaATATTCGTATAATTGTGTTTACATGTACCAAGCCTAGAGTGAAATGTACTCCAGTTTTGTTCATTCGAGTTTGTAATTCAGATGTCTCCAGCATTGTTAGTATTCATTCACACAAGGATCAGAATAGGTGTGAGGTGCACATGTATAGTGATAGAATGGAAGCCCATTTGTTCACAGATATGAAATCCaatagcattttattatatcaAAGATGCACACCAGAAGTGGATATTCCTTCTCTAGTGAATTCACACCAGTGGGCAGAAATCACTTGAAATTTATTTTGTTCACACTCTAAAATgcagattggaattggattgaGACAGTCCAGCTGCTCCACTTTAGGTTTACACCGGGTTTACAGTTTTGCTGTACTTTTTCTGGGCCAGAGGGATAAGGgtcagatgaataaaacatgacattgtCACTGAGCAGTCAGCCAATTTGAATTATTTACACTCATCTTCCCAATTCCCCATTCCATGGCTGTGGAATGAAAATCGGATCTGaactgaggtgtttttttttttttttaatatgtttattttactttgtcTCTTATGATTTCTGGATTTCATCCCTACTTCCCACACATCTCAAACAATTTTACCTTCCCTATCCTGAGACATACTGTGTAACCATCAATACACTGTGGGATCTGTGCCCTGTGCTCTGCCTAGGCCATGTTGTGCCTAGCTAAACTCCCCTTCCTGTGCACACATATAGTACATACACACCAAGTTCCAGTCAGTAACCCTCAGATGTCTCTGATGAGACAAATGTGAATTGCACAGACCAGTCAACCTTTGCAGTGTGAGTAAAGCcagagcactgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtggtgacctCATCTTGCCTTGTGTTAGAACCACACCCACTTTGAGAGCAGTGAGATATTCCCACAGCAGAGACTGTACATTCTCTCTCCGTGTAGTGTGTTTGCTAGAATACCCCCATCTActttgatatatgatatatgaaaCAAATGACATGTTACACTCAGGCAGTGTGTAAATTATCATCAAATATTGATGAAatcttcctctctctgcctctcccacacccaaatgcacacaaacacaaacaatctctctctctctctctctctctctctcactcacactcacacacacacacacacacacaaacacgcacgtGCTCTGCTGCAGCCAGTCAGTCTGTGAGAGTAAAAGGCTAGTCCCTATAGACATATACAGGAGTAGAGGAGGATGGAAAATAAGAGTGAAGGATAGAGTAAAGAACGCAGGCAGCACAATAATATACACTTatcatttaatatcattttaggTGATTGTATATTATTAGAAAAATCAGGAGCATCCAAATATTAAAGTTACTCATAAAATGCAAATCCAACCACTTACAAGAACCAACATGAAATAAAGTGAATTACTGTGTGATATCTGTGTACTATAATGCACTTGACTGACTGTATTGaatttttcttcagaaaattgTATATacctataatttttttttttggattgcaTGTATTTGTGCCTCCTGGGTCTCCTTCTCCTCGTGCTTGTTTCTTTTACAAGTAGCTTTCACAGGGAGGAGCGCCATGCCTAATTAtctaaaaaatcatttatttgacAAAATTTGATACATGGCATTATAGAGTGCTAAGCAACATGATGTTAGTCAGATCATTTAATTCCACAGCTGCTCCTGACATCACAGAACAGGTCAGTACAGCTTCAAACGAGGCAAACCTACATGTtgtttcacttcactttttcaTCTGTGTTAATGATTTCCCCAAATGGAAAGAGAGTGGAGAGGGGAACTCTGGGGAGTGAATAGAGTAACACAGTGGAAGAGAACTAAGGATACATGTGTAGGCCAGCACTGTTTGGGGTATGTTTTGgatgtattacatttttttttttgctagtgaTTGAATTTCCTagttttgtgcttttatttggTAATCTTAACCAAAACCCACACAGTGATGGGTGGGTCTCAATTCTTTCATGACCGCCTGTGATGGGGAAACAGTATCTTTTATGTGTCACATGGAGTTCTCCACATTAATATCACGGAAATATGATTAAACAGCTGCTTAATTGAAGTATAATTTGGTTACCAGACATTAGATTTTCTGTATTCTTTCTTTGTCTGGTTTGGCATTAAAATGATATCAGTGATatgttttctgattattttaattaaataatgatattttaaacTAGAACATATTTTGCTTTCATGGTCAAATGCATAGCAGTTAACGGTTCCCCTGACTTAAGAAATACACTGTctaattttgaaatgaaattactTTTCAATAAATCAATGCGAAA

Function

symbol description
lrrc6 Acts upstream of or within several processes, including epithelial cilium movement involved in extracellular fluid movement; flagellated sperm motility; and outer dynein arm assembly. Located in cytosol. Is active in apical cytoplasm. Used to study primary ciliary dyskinesia 19. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 19. Orthologous to human DNAAF11 (dynein axonemal assembly factor 11).

NR:

description
protein tilB homolog isoform X2

GO:

id name namespace
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0048793 pronephros development biological_process
GO:0003146 heart jogging biological_process
GO:0044458 motile cilium assembly biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0060294 cilium movement involved in cell motility biological_process
GO:0001947 heart looping biological_process
GO:0042995 cell projection cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K19753 LRRC6; protein TilB

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941263.2 True 4330 mRNA 0.41 12 7859024 7881717

Neighbor

gene id symbol gene type direction distance location
trnau1apb tsp1l,LOC108428349,LOC107680226,LOC107589802,LOC107718075,LOC107722553,LOC107688461,LOC107585172 coding upstream 246240 7603361 ~ 7612784 (+)
LOC113543252 LOC108280221 coding upstream 283644 7568121 ~ 7575380 (+)
foxl2a foxl2 coding upstream 304099 7553561 ~ 7554925 (+)
rbp2a ret2,rbp2,LOC103044214,LOC108410483,LOC108239352 coding upstream 354327 7500421 ~ 7504697 (+)
LOC117595729 NA coding upstream 365205 7489370 ~ 7493819 (+)
kcnq3 kcnq3,LOC107749193 coding downstream 2178 7883895 ~ 7935093 (+)
LOC113543381 hhla1 coding downstream 59361 7941078 ~ 7953336 (+)
oc90 NA coding downstream 75326 7957043 ~ 7973996 (+)
adcy8 adcy8,LOC107569488,LOC107557810,LOC107659784,LOC107663336 coding downstream 188848 8070565 ~ 8130482 (+)
myo10 myo10,LOC107602648,LOC107749189 coding downstream 312038 8193755 ~ 8257661 (+)
G316419 NA non-coding upstream 129287 7703722 ~ 7729737 (+)
G316405 NA non-coding upstream 169059 7689377 ~ 7689965 (+)
G316398 NA non-coding upstream 187165 7671572 ~ 7671859 (+)
G316397 NA non-coding upstream 187504 7671290 ~ 7671520 (+)
G316396 NA non-coding upstream 188465 7670331 ~ 7670559 (+)
G316630 NA non-coding downstream 162776 8044493 ~ 8044697 (+)
G316741 NA non-coding downstream 377112 8258829 ~ 8259070 (+)
LOC113543009 NA non-coding downstream 377541 8259258 ~ 8261712 (+)
G316752 NA non-coding downstream 449789 8331506 ~ 8331786 (+)
G316754 NA non-coding downstream 450707 8332424 ~ 8333531 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 102063 7751694 ~ 7756961 (+)
G316413 NA other upstream 163105 7695534 ~ 7695919 (+)
crsp7 LOC108280732 other upstream 260860 7582313 ~ 7598164 (+)
G316001 NA other upstream 723523 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 914034 6937340 ~ 6944990 (+)
G316744 NA other downstream 381622 8263339 ~ 8264061 (+)
G316745 NA other downstream 386992 8268709 ~ 8269198 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 929878 8811595 ~ 8813410 (+)
G317390 NA other downstream 1530606 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 2077276 9958993 ~ 9977916 (+)

Expression


Co-expression Network