trnau1apb (tsp1l,LOC108428349,LOC107680226,LOC107589802,LOC107718075,LOC107722553,LOC107688461,LOC107585172)


Basic Information

Item Value
gene id trnau1apb
gene name tsp1l,LOC108428349,LOC107680226,LOC107589802,LOC107718075,LOC107722553,LOC107688461,LOC107585172
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7603361 ~ 7612784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941265.2
AGGGTTGGCAAGGTTTTGGCTCGATTGCGCTTCTTTAATCTCGATTTCTTTATCGTAGTAGTAACATTCAACCAGCCAAGATGTTTAACAGAATGACAAGTCTGTGGATGGGCGATTTAGACCCATACATGGATGAAAATTTCATCAAGCAGGCTTTCAGCACTATGGGGGAGACGGCCTACGGGGTTAAAATTATAACACATCGGGTAACAGGAGGCTCTGCGGGATATTGTTTTGTGGAATTGGCAGATGAAGCCAGTGTTGACCGGTGTGTCCAGAGGCTCAATGGCAAGCTCGTTCCAGGATCAAATCCTcCCAGAAAGTTCAAGCTGAACTATGCAACATATGGGAAAAGGCCTGAGCCTGGgCCTGAATTTTCTGTCTTTGTTGGAGACCTGACATCAGAAGTTGATGATTATCAGCTACATCAGTTCTTTCTGAAAAAATACCCTTCATGCAAAGGAGCCAAAGTTGTCACTGATCCCTACGGAAATTCTAAGGGCTACGGGTTTGTGAAGTTTGGTGATGAAAGCGAGCAGAAGAAAGCCCTGGAGGAGTTTCAGAATGCTACAGGTCTGGGGGGCAAAGCCATCAGAATCAGTATCGCAGTCAACAAAagCAACAAATCAAACAGCTACCACAACCAGAGTCACAACTATAATAGCAATTACCAGCAGCAGTACTATCAGCAGCCCTACAACAATTACTACCAACACTGGGGTTATGATCAGTATAGCAGCTACAACTACGGCTATAATCCGTATGCAATGCCCCCTCCTGTTCCTCATGGGATGATGGGACCCCCTCCGCCAATGGGAATGCCCCCCATGCCCCCTGACATGCAGACAACCACAGAGCAGTCCCAAGATGCCACTGAAGAGGTTGAGGAGGAGAATGAAGAGCCAAACCCCCCAGTGGACGTGGAGTCACTGAACAAGCAGTACATGGAGCGCAGTGAGGAGCTCTATGAGTCACTCATGAATTGCTACTGGCAGCCTTTGGATTGCATCACATCAGAAATCTCATAATGGAATTTGTCCTGATTATCCGGATCTCCTTTCTGTAAATGTCAATGCCTTTTTACCCAGCTCTCACttttcaaaaacacatacacacttggtCTTTTTCATGTGGAAGTTGCTTTGTATTTCTGTTCAGTCTTCTGTTTTCTTcatcatttaaataaagattgtTCTTTTAAGTACA

Function

NR:

description
PREDICTED: tRNA selenocysteine 1-associated protein 1-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K25102 TRNAU1AP; tRNA selenocysteine 1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941265.2 True 1206 mRNA 0.45 9 7603361 7612784

Neighbor

gene id symbol gene type direction distance location
LOC113543252 LOC108280221 coding upstream 27981 7568121 ~ 7575380 (+)
foxl2a foxl2 coding upstream 48436 7553561 ~ 7554925 (+)
rbp2a ret2,rbp2,LOC103044214,LOC108410483,LOC108239352 coding upstream 98664 7500421 ~ 7504697 (+)
LOC117595729 NA coding upstream 109542 7489370 ~ 7493819 (+)
brwd1 brwd1,LOC108280674,LOC108410482,LOC107677081,LOC107567576,LOC107730991,LOC107655817,LOC107747676 coding upstream 113360 7466633 ~ 7490001 (+)
lrrc6 lrrc6,LOC108280282 coding downstream 246240 7859024 ~ 7881717 (+)
kcnq3 kcnq3,LOC107749193 coding downstream 271111 7883895 ~ 7935093 (+)
LOC113543381 hhla1 coding downstream 328294 7941078 ~ 7953336 (+)
oc90 NA coding downstream 344259 7957043 ~ 7973996 (+)
adcy8 adcy8,LOC107569488,LOC107557810,LOC107659784,LOC107663336 coding downstream 457781 8070565 ~ 8130482 (+)
G316339 NA non-coding upstream 35293 7565086 ~ 7568068 (+)
G316317 NA non-coding upstream 97957 7505079 ~ 7505404 (+)
G316288 NA non-coding upstream 169937 7426461 ~ 7433424 (+)
G316000 NA non-coding upstream 473484 7127691 ~ 7129877 (+)
G315968 NA non-coding upstream 569555 7033565 ~ 7033806 (+)
LOC117599993 NA non-coding downstream 35920 7648704 ~ 7650020 (+)
G316396 NA non-coding downstream 57547 7670331 ~ 7670559 (+)
G316397 NA non-coding downstream 58506 7671290 ~ 7671520 (+)
G316398 NA non-coding downstream 58788 7671572 ~ 7671859 (+)
G316405 NA non-coding downstream 76593 7689377 ~ 7689965 (+)
crsp7 LOC108280732 other upstream 5197 7582313 ~ 7598164 (+)
G316001 NA other upstream 467860 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 658371 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 1376121 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1701795 5894504 ~ 5901566 (+)
G316413 NA other downstream 82750 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 138910 7751694 ~ 7756961 (+)
G316744 NA other downstream 650555 8263339 ~ 8264061 (+)
G316745 NA other downstream 655925 8268709 ~ 8269198 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 1198811 8811595 ~ 8813410 (+)

Expression


Co-expression Network