pmvk (pmvk)


Basic Information

Item Value
gene id pmvk
gene name pmvk
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3813253 ~ 3816854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941277.2
GGGCGTGGCTATATAGAGAAAgcggtagtgtgtgtgtgcagaaacaGATGGAGGATTTCTGATTGTGTggaaagttttatatataatgacAGCTTCAGAGCCAAAACTTATTTTGTTATTCAGCGGAAAACGGAAGTCTGGGAAGGACTACGTgacaaatttaatacaaaaaaggTTGAGTCCAAAGCTGTGCTGCATCCTCCGGCTTTCTGCTCCACTTAAAGAGCAATATGCACAGGAGCACGGGCTGGACTATGAGCAGCTGTTGGGAGCGGGGCAGTACAAGGAGCAGCACCGGGCAGAGATGATCAGCTGGGGGGAGAGCAAGAGGCACCAGGACCCAGGCTTCTTCTGCCGCAAGGTGGTGTGTGGAGCCGCTCAGCCCGTGTGGattGTGAGTGACTGCAGGCGCTTGTCTGATTTGCAGTGGTTCTGGAGTGAATATccacagcagtgtgtgagtgtccGTGTGGAGGCCTCTGAGCAAACCAGGGCTCAGAGGGGATGGAGATTCACTGCAGGAGTAGACGATGCAGAGTCTGAATGTGGTCTGGATCAGGGCGTGGACTTTGACTGGATCATACGGAACGATGGAAATGGCACTCTTCTCGACGGACAGCTTGAGGGACTGTTGGCATTAGCTAGGGAGAGGACACAAGAGCACCAATGCACACAAGATAGTATAAAATCAAATGGACAATGAAGAGGAGACTTATCTGTGGAACAAAAGTATTATGTCTGGTTATTGTAGaccatgtttatttaaatgaaggGGCCGTTTTTGATAAAGAGTGACAGGCATTTATATTAAGATTTGCAAAATATGTTGCTGTTTACTGTCATATTGCATTTGTGACTTATTGTGTCTTATCTTTCCTTGAGCAATGTGATTAGAAATTGTCCAGGTCAAACATTTTGAGGGAACTGTGATCAGTGATCAACAGTTATCACCACTTGAATCCCAATTTTTAGTATTTTGTTTTGGACTTTCATCAAGACATTATCATGTTTCTCATACATTTTTAAGGGAAAGCTCATCAGCAATTAATAATACAAATCCCAAATACCGGGAGTGCCTGAGCAAGTCCGTTAAACCTTAACAGATTTCCTTGAATTTGATTCTACCTCACTTGTAAGTATTTTAGATAAaattgctaaaataataataaattaaaatgtat

Function

symbol description
pmvk Predicted to enable phosphomevalonate kinase activity. Predicted to be involved in cholesterol biosynthetic process and isopentenyl diphosphate biosynthetic process, mevalonate pathway. Predicted to act upstream of or within cholesterol metabolic process; phosphorylation; and sterol biosynthetic process. Predicted to be located in cytosol. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human PMVK (phosphomevalonate kinase).

NR:

description
PREDICTED: phosphomevalonate kinase

GO:

id name namespace
GO:0006695 cholesterol biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004631 phosphomevalonate kinase activity molecular_function

KEGG:

id description
K13273 PMVK; phosphomevalonate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941277.2 True 1181 mRNA 0.43 5 3813253 3816854

Neighbor

gene id symbol gene type direction distance location
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding upstream 150566 3647747 ~ 3662687 (+)
LOC113543357 NA coding upstream 166581 3642315 ~ 3646672 (+)
trnas-aga_16 NA coding upstream 185140 3628032 ~ 3628113 (+)
trnas-aga_14 NA coding upstream 187223 3625960 ~ 3626030 (+)
trnas-aga_13 NA coding upstream 187756 3625416 ~ 3625497 (+)
trnap-ugg_21 NA coding downstream 130081 3946935 ~ 3947006 (+)
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding downstream 145901 3962755 ~ 3968351 (+)
LOC113543359 LOC108280252 coding downstream 357939 4174793 ~ 4183429 (+)
igsf10 igsf10 coding downstream 408644 4225498 ~ 4238706 (+)
p2ry12 LOC108280198 coding downstream 435016 4251870 ~ 4256834 (+)
G313975 NA non-coding upstream 4563 3807148 ~ 3808690 (+)
G313853 NA non-coding upstream 288735 3524309 ~ 3524518 (+)
G313796 NA non-coding upstream 513947 3299098 ~ 3299306 (+)
G313607 NA non-coding upstream 736883 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 868046 2942487 ~ 2945207 (+)
G313990 NA non-coding downstream 29003 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 71173 3888027 ~ 3895685 (+)
G314222 NA non-coding downstream 179648 3996502 ~ 4000314 (+)
G314362 LOC108280893 non-coding downstream 473400 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 478011 4294865 ~ 4295074 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 323886 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 923865 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1137405 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1150854 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1627576 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 775586 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 970994 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1084616 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1270985 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1384167 5201021 ~ 5216591 (+)

Expression


Co-expression Network