cavin4a (murc,murca,LOC107690354,LOC107749140,LOC107602614,LOC107721748)


Basic Information

Item Value
gene id cavin4a
gene name murc,murca,LOC107690354,LOC107749140,LOC107602614,LOC107721748
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8800697 ~ 8802910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941301.2
GGAGGGTATGAGTCAGGCTGGTGGTTCTTTGGCAGGACAGATCTTGGTCTTTGCATCAGTCAGTCTTTCTCTCCAAGTCAAACAGGCTGGCAGATCTCCTGCCTACCAGGATAAATGCGTGGTTGAGGACTTTATCCTCACTAAACCATCAGTGGTTGTTTCCAGTGTTTGTAAGAGTTTGTTGGAAATGGAGAAGAGTAGAGACATGGTGCTGGGAATTGAGGATGAGTCTGGTCAGCCGGTGTCTCCACTGTCCATCCTGTCTCTTCTGGAACGTGTCTCCACTATCATTGATGGTGTGCAGGCCAGCCAGCAAAGAATGGAAGAACGCCAACATCAGCTAGAGGCATCTGTTGCTACAGTCCAATCAGAACTGCTCAAACTGGTCCAGAACCATGGTGCCACAGCAACCACTGTGGACAAGCTGCTGCAGAAGGCCCGGCGTGTGAGCGCTCATGTGAAGGAGGTGCGTTCACGTGTGGAGAAGCAGAATGTCCGTGTAAAGAAAGTGGAGACTGCACAGGATGAACTTCTCACCAGGAACAAGTTCAGAGTGGTTATCTACCAGGGTGAGGCTGAAGTTCCATCAGTTGCTGTGACAAAAACCCCTAAGGATGCAGGGTTGGCTAATGTTGAGGTGGAGCCTGATGAGTATGAAATACCTGCAGACCTCTCATCTGATGAGGAGTATATGGTGGTGGAAGAGGCAGAGTCATCAAGGGCAGCACGACTGAGGCAGACAGGCTTGAAAGGGATAGACAACATCAGAGCGGCTTTCTCCAAGGATAACATGAATAAGACCCGTGATCGAACACGGGAGAACCTCAGCAAGACTAAGGAGAGCCTAAGCAAGACAAGCCAGACTTTGGGCACTAAGATCAACACCCTGGGTGAGAAGATCATTCCTCTTGAGCAGCGGGAGAAGATGCGTCAGAGTGGTGAGAGGCTGAAGGAGAACATTGCCAAGAAAGCTCCCAGCAAAGAGTCCTTCCGCATCAAACTCAAGAAGGAACGTGCTGTTGCTGAGGGCCAGGAGGGTGCTGAGGCAGAGCCTGCTGTGACTCCACCAAAAGGCAGGAAGACCAGCCCAGAAGTCACCTACACAGAGGTTGTTACAGAAATCAAACGGGAAGGGCCTGTATCTGAGGAACGAGCCACCCGTATTTCAGAGGAAGGAAAGAGTGGGCTGGCCATAGAAACACCAGAGAAGTGAAGAAAACAGTGGAGAGGGATAGAGAgtgtaagagaaaaaaatcgaAGCGCTAAAGAAAAGGCATAAGAAAGtttattagaaataataaataatagaacacaatgtgcatatatgtgtggaTGTAAAAtccaaatttaaaacaaattataaCTGAGACCTCCCAGTCTAATTACCAGGATGGCAAACCTAATCAGTGAGTAATAAGGACTAGACATCATTAAGAAAGAGTCATACTGGTACAGCTGTCTGTGTGTCAATTCCATGTTTAGAAATAACTTTGAAAAACTGAGCAACTGCAcaacttattatttattaacacacaTAGGGAGTATTGCTTGTGAATTTACTGGAGTAGAAAAAGCACTAAAATATTCAGAACAGTGGCCTAACATATTTGGGAGTGGGGAACACTAGTTATAGGGCCATATTTTTTTAGAAgacctagattttttttttttttttttttttaaacaattcttAATTGGGAACATTATGTCCAGCACCTTTAAAaactctcaatctctctctctcgctccctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagtgcaTATACATTTGGAGGAGTATTTGACATGTATACTAAAAAAAGATGActtgaaataaatgaacagcTGAGCattc

Function

symbol description
murc UDP-N-acetylmuramate--alanine ligase

NR:

description
muscle-related coiled-coil protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941301.2 True 1879 mRNA 0.45 2 8800697 8802910

Neighbor

gene id symbol gene type direction distance location
med17 med17 coding upstream 14039 8757957 ~ 8786658 (+)
gtpbp4 gtpbp4,LOC107721733,LOC107749117,LOC107690210,LOC107659538 coding upstream 122603 8667284 ~ 8678094 (+)
slc39a6 slc39a6,LOC107749133 coding upstream 143098 8631553 ~ 8657599 (+)
LOC113542997 LOC108270649,LOC108428329 coding upstream 169360 8616397 ~ 8631337 (+)
LOC113543000 LOC108428331 coding upstream 215198 8552247 ~ 8585499 (+)
urb1 urb1 coding downstream 12856 8815766 ~ 8891958 (+)
LOC113543050 LOC108280424 coding downstream 206291 9009201 ~ 9027258 (+)
LOC113543049 LOC108280422 coding downstream 230659 9033569 ~ 9163194 (+)
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding downstream 365501 9168411 ~ 9219101 (+)
LOC113533645 arhgap12,LOC108280343 coding downstream 729767 9532677 ~ 9642644 (+)
G317113 NA non-coding upstream 6753 8793714 ~ 8793944 (+)
G317045 NA non-coding upstream 69879 8726341 ~ 8730818 (+)
G317031 NA non-coding upstream 109226 8689435 ~ 8691471 (+)
G317027 NA non-coding upstream 138921 8661286 ~ 8661776 (+)
G317008 NA non-coding upstream 212486 8587995 ~ 8588211 (+)
G317125 NA non-coding downstream 2360 8805270 ~ 8805725 (+)
G317136 NA non-coding downstream 17314 8820224 ~ 8821893 (+)
LOC117599967 NA non-coding downstream 95359 8898269 ~ 8899873 (+)
G317148 NA non-coding downstream 100280 8903190 ~ 8904069 (+)
G317139 NA non-coding downstream 135808 8938718 ~ 8942335 (+)
G316745 NA other upstream 531499 8268709 ~ 8269198 (+)
G316744 NA other upstream 536636 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 1043736 7751694 ~ 7756961 (+)
G316413 NA other upstream 1104778 7695534 ~ 7695919 (+)
crsp7 LOC108280732 other upstream 1202533 7582313 ~ 7598164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 8685 8811595 ~ 8813410 (+)
G317390 NA other downstream 609413 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1156083 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 1733521 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 1760911 10563821 ~ 10568907 (+)

Expression


Co-expression Network