tgs1 (tgs1)


Basic Information

Item Value
gene id tgs1
gene name tgs1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2133150 ~ 2145237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941305.2
TGTTTTCCCAGAATTCCTTGCTCGGTTTTGTCGCCGCTTCTGAACATGTGAGAGTCTGTAACACTGATTATTTcagctgtttgttttcttcttacGCTATTTTGAGctgtatttgtaatatttctCCGCGAGGTGATGACGTCAGGCCGGCGTTAATGAagagtgtgttctgattggctgctctgGAATCCGCTCATTAGGAAGCTCATCTCATTTTATCACTGGAGAGACTGACAGGATGATCAGTCATGTGAAGTGGCAGCCAGGTCCAGTAGCTGATATATTTTTTCATCAAGGTGCAGAAGAGGAAATGACGATCCACTGCTTTTGCTCCAGAGCTTTTGTGAATGATCGAGAGCTGTATAGATCGGATATCAAGTCTCTGCTGAATCAGACCCACGACGGAGCGCGAGTCTAtcaggaggatgaggaagatgaggagtCCAGCTGctctgaggaagaggaggacacGGTGCTGGATGAAGAAACCCTGCTCATGGTCAGTTTGGGGCTTCCCGTAGCCTTCGCCAGCTCCTCACTTCAGAGAAGAGCAAGCAAGAATGGATACAGAGGGAAGAAGAAGAGCAGCACTGAGCGCTGGGAGAACTCCGATTATTATAAAACCTCACAGCCGGAGCTGTTGATGGgcgaggaggaggaagaggaagagcgAAAGGAGGAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCGTAAGGAGGAAGAGCGAAAGGAGGAAGAGCGTGAGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAgagtgtgaggaagaggaggtgaAGGCTGTTGTGGACGAGACTTGCACAGAGCCGGAGTCTCACACTGATCATGCCTGGCTGCAGTACTGGAATCTGCACGGAGAGAGCCTGCTGTGGGCGAGCTGGGTGGAGAAACACGCAGAGTTCTCCACCGCGTCTCCTCCGGCTCCATGGGCGTGTCCTGAATGGAGGGAAAAGTGGGAGGAGCATGCTAATCAGATGTATGGATATTACTGGGAGCAGTTTAGCTACTGGGCTTCTCAGGGCTGGACCACAGACGAGACGATTAGCACTGCTGCTGCTCGAGACGAGGAACTGCATGCTGAGGAACACCATGAACAGCTGGATGTGATGGAACCGGAGAAAGATGGACACAAGTCTTCCACTTGCTGTGATCAGATGTCAGGAGAACCGGAGAGGTTTCCGGGCGAAAACCCAGCTGACATCACAGAGCTCGTTAGCAGTTTAAACTTGGACACAGAGAAATGCGAGCATGATGGTATTAATAAAATTTTGCACTGTAGTTATGCTAATGAGCCTCATGAAGGAGGAGACCGGAAAAGACCGGCTTCATCGGGCAGCACCGGCACGGAGAAAAGCAATGAGAAACCGAAGTCCAGTACTCAGCCAAACAGAGCCAGCGAGCCAGCGAAGAGCAGCTCAAAGGAGGATGATAGTGATGAGGACGAGCCGccagagagaaaagcaaaaacGAAAAGGAGtcatGAGCTAGACGTCGATGAACTCGCTCAGATGCCTGCTGACGAAGCGTGGGAGAGTCTGGGCCTCAAACGCGGCCATCAACACAAGTTTGTGAGTGTTTTAAAGTTCCGGAGAACGCAGGAGGGAACTCGGAGGAAGGCTAAATGGAGACAGAAAGCCACCTGCAAAATCAACAAGCATGTGTTCTTTACTGAGGACGGAGAGATGGCAGAGCCCAAGATCAACAAAACTCTCCAAAAAGTGCAGAATTTCCTCCAGACGGTCCAAGCTGGGAATGACTCGGAGAAGACAGCAGCATCAGTGCTGGATGGAACGGGAGAAGGACACGGCGCTCCAAATCCACAGGAATGTAAGGAAGAAAAGGTGGAGGAGTTTAGGGAGACTACTCAGCTTGGACAGCATGGAGAAGGTGAAGAACAATTCAGCAAGCAGCAGGTCATAACCGAGCTGGAACCAGAACCACTAACGGAACCAGAGCAGGAAACACATGTTCCTTCAGACAGTAAGGAGCAGGAACTCGGAAGGGAACTTGTGCCTCTGGACATCCCAGACTTCCTCATTCCTGATGCTCCAGAAGATGAAAATGGAGcCAAGAACCAGAAGTCttcaaagaagaagaaaaagaagaaggctAGAAGGTGGAGGAGGCGGGAAGTGGAAGTGGACGTGCCTCCTGAGATCGCAGCTGAGCCGGAGTTGGCCAAGTACTGGGCTCAGCGTTATCGCCTGTTCTCTCGTTTCGATGAGGGCGTTAAACTGGATCACGAGGGCTGGTTTTCTGTCACGCCTGAGAAGATAGCCGAGCACATTGCTCAGAGAGTGCAGGTTGCATCCCAGACGCTGGTCATCGTCGATGCCTTCTGTGGAGTGGGAGGAAACGCCATTCAGTTTGCCCTCACTGGAAACATGGTGATCGCCATCGATATCGACCCGGTGCGATTAGCACTCGCACAGCACAACGCTGCAGTGTATGGAGTTAGTGAAAGGATCGACTTCATCCAGGCGGATTTTCTGCAGGTGGCGCCGCAGCTCCGGGCTGACGTAGTCTTCCTCGGCCCACCATGGGGGGGACCCAAGTATCTCCACGCTGACGTCTTCAACATCAAGACCATGATGAGCCTTGATGGATTTGAAGTTTTCAGGCTGGCCAAGATGATTTCAGAAAACATTGTGTATTTTCTCCCAAGGAATGCTGATATGGAGCAGATTGCGTCTCTCGCTGGCCCTGGTGGGAAAGTGGAAGTGGAGCAGAACTTCCTGAATAACAAACTGAAAACCATAACTGCATATTTTGGTAATTTAATCAAGTCAGATTCATAGTTGAACTTTTTAATGTCCTCCAAATCTGACTTTTGTGtaacagtgtatatactgtctttatttatttagttttattgcCTAATTACTGTTTTAGGATGAATCATTTCTTTTACAGATGATACCTAATGTCTTtgtacatctgtatgttttTCTATTAAAGATCATCAAGTGTG
>XM_026941306.2
gCTACAAAGATTCCTTTAATACCGCAGCTGCTCTGCTCTTCTGGAGTCTTTTAACTTGTCGTCTGTTTTCCCAGAATTCCTTGCTCGGTTTTGTCGCCGCTTCTGAACATGTGATGACGTCAGGCCGGCGTTAATGAagagtgtgttctgattggctgctctgGAATCCGCTCATTAGGAAGCTCATCTCATTTTATCACTGGAGAGACTGACAGGATGATCAGTCATGTGAAGTGGCAGCCAGGTCCAGTAGCTGATATATTTTTTCATCAAGGTGCAGAAGAGGAAATGACGATCCACTGCTTTTGCTCCAGAGCTTTTGTGAATGATCGAGAGCTGTATAGATCGGATATCAAGTCTCTGCTGAATCAGACCCACGACGGAGCGCGAGTCTAtcaggaggatgaggaagatgaggagtCCAGCTGctctgaggaagaggaggacacGGTGCTGGATGAAGAAACCCTGCTCATGGTCAGTTTGGGGCTTCCCGTAGCCTTCGCCAGCTCCTCACTTCAGAGAAGAGCAAGCAAGAATGGATACAGAGGGAAGAAGAAGAGCAGCACTGAGCGCTGGGAGAACTCCGATTATTATAAAACCTCACAGCCGGAGCTGTTGATGGgcgaggaggaggaagaggaagagcgAAAGGAGGAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCGTAAGGAGGAAGAGCGAAAGGAGGAAGAGCGTGAGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAgagtgtgaggaagaggaggtgaAGGCTGTTGTGGACGAGACTTGCACAGAGCCGGAGTCTCACACTGATCATGCCTGGCTGCAGTACTGGAATCTGCACGGAGAGAGCCTGCTGTGGGCGAGCTGGGTGGAGAAACACGCAGAGTTCTCCACCGCGTCTCCTCCGGCTCCATGGGCGTGTCCTGAATGGAGGGAAAAGTGGGAGGAGCATGCTAATCAGATGTATGGATATTACTGGGAGCAGTTTAGCTACTGGGCTTCTCAGGGCTGGACCACAGACGAGACGATTAGCACTGCTGCTGCTCGAGACGAGGAACTGCATGCTGAGGAACACCATGAACAGCTGGATGTGATGGAACCGGAGAAAGATGGACACAAGTCTTCCACTTGCTGTGATCAGATGTCAGGAGAACCGGAGAGGTTTCCGGGCGAAAACCCAGCTGACATCACAGAGCTCGTTAGCAGTTTAAACTTGGACACAGAGAAATGCGAGCATGATGGTATTAATAAAATTTTGCACTGTAGTTATGCTAATGAGCCTCATGAAGGAGGAGACCGGAAAAGACCGGCTTCATCGGGCAGCACCGGCACGGAGAAAAGCAATGAGAAACCGAAGTCCAGTACTCAGCCAAACAGAGCCAGCGAGCCAGCGAAGAGCAGCTCAAAGGAGGATGATAGTGATGAGGACGAGCCGccagagagaaaagcaaaaacGAAAAGGAGtcatGAGCTAGACGTCGATGAACTCGCTCAGATGCCTGCTGACGAAGCGTGGGAGAGTCTGGGCCTCAAACGCGGCCATCAACACAAGTTTGTGAGTGTTTTAAAGTTCCGGAGAACGCAGGAGGGAACTCGGAGGAAGGCTAAATGGAGACAGAAAGCCACCTGCAAAATCAACAAGCATGTGTTCTTTACTGAGGACGGAGAGATGGCAGAGCCCAAGATCAACAAAACTCTCCAAAAAGTGCAGAATTTCCTCCAGACGGTCCAAGCTGGGAATGACTCGGAGAAGACAGCAGCATCAGTGCTGGATGGAACGGGAGAAGGACACGGCGCTCCAAATCCACAGGAATGTAAGGAAGAAAAGGTGGAGGAGTTTAGGGAGACTACTCAGCTTGGACAGCATGGAGAAGGTGAAGAACAATTCAGCAAGCAGCAGGTCATAACCGAGCTGGAACCAGAACCACTAACGGAACCAGAGCAGGAAACACATGTTCCTTCAGACAGTAAGGAGCAGGAACTCGGAAGGGAACTTGTGCCTCTGGACATCCCAGACTTCCTCATTCCTGATGCTCCAGAAGATGAAAATGGAGcCAAGAACCAGAAGTCttcaaagaagaagaaaaagaagaaggctAGAAGGTGGAGGAGGCGGGAAGTGGAAGTGGACGTGCCTCCTGAGATCGCAGCTGAGCCGGAGTTGGCCAAGTACTGGGCTCAGCGTTATCGCCTGTTCTCTCGTTTCGATGAGGGCGTTAAACTGGATCACGAGGGCTGGTTTTCTGTCACGCCTGAGAAGATAGCCGAGCACATTGCTCAGAGAGTGCAGGTTGCATCCCAGACGCTGGTCATCGTCGATGCCTTCTGTGGAGTGGGAGGAAACGCCATTCAGTTTGCCCTCACTGGAAACATGGTGATCGCCATCGATATCGACCCGGTGCGATTAGCACTCGCACAGCACAACGCTGCAGTGTATGGAGTTAGTGAAAGGATCGACTTCATCCAGGCGGATTTTCTGCAGGTGGCGCCGCAGCTCCGGGCTGACGTAGTCTTCCTCGGCCCACCATGGGGGGGACCCAAGTATCTCCACGCTGACGTCTTCAACATCAAGACCATGATGAGCCTTGATGGATTTGAAGTTTTCAGGCTGGCCAAGATGATTTCAGAAAACATTGTGTATTTTCTCCCAAGGAATGCTGATATGGAGCAGATTGCGTCTCTCGCTGGCCCTGGTGGGAAAGTGGAAGTGGAGCAGAACTTCCTGAATAACAAACTGAAAACCATAACTGCATATTTTGGTAATTTAATCAAGTCAGATTCATAGTTGAACTTTTTAATGTCCTCCAAATCTGACTTTTGTGtaacagtgtatatactgtctttatttatttagttttattgcCTAATTACTGTTTTAGGATGAATCATTTCTTTTACAGATGATACCTAATGTCTTtgtacatctgtatgttttTCTATTAAAGATCATCAAGTGTG
>XR_003404395.2
GTTTTCCCAGAATTCCTTGCTCGGTTTTGTCGCCGCTTCTGAACATGTGAGAGTCTGTAACACTGATTATTTcagctgtttgttttcttcttacGCTATTTTGAGctgtatttgtaatatttctCCGCGAGGTGATGACGTCAGGCCGGCGTTAATGAagagtgtgttctgattggctgctctgGAATCCGCTCATTAGGAAGCTCATCTCATTTTATCACTGGAGAGACTGACAGGATGATCAGTCATGTGAAGTGGCAGCCAGGTCCAGTAGCTGATATATTTTTTCATCAAGGTGCAGAAGAGGAAATGACGATCCACTGCTTTTGCTCCAGAGCTTTTGTGAATGATCGAGAGCTGTATAGATCGGATATCAAGTCTCTGCTGAATCAGACCCACGACGGAGCGCGAGTCTAtcaggaggatgaggaagatgaggagtCCAGCTGctctgaggaagaggaggacacGGTGCTGGATGAAGAAACCCTGCTCATGGTCAGTTTGGGGCTTCCCGTAGCCTTCGCCAGCTCCTCACTTCAGAGAAGAGCAAGCAAGAATGGATACAGAGGGAAGAAGAAGAGCAGCACTGAGCGCTGGGAGAACTCCGATTATTATAAAACCTCACAGCCGGAGCTGTTGATGGgcgaggaggaggaagaggaagagcgAAAGGAGGAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCGTAAGGAGGAAGAGCGAAAGGAGGAAGAGCGTGAGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAGAGCATGGGCAGAAAGAGCGAAAGGAGGAAgagtgtgaggaagaggaggtgaAGGCTGTTGTGGACGAGACTTGCACAGAGCCGGAGTCTCACACTGATCATGCCTGGCTGCAGTACTGGAATCTGCACGGAGAGAGCCTGCTGTGGGCGAGCTGGGTGGAGAAACACGCAGAGTTCTCCACCGCGTCTCCTCCGGCTCCATGGGCGTGTCCTGAATGGAGGGAAAAGTGGGAGGAGCATGCTAATCAGATGTATGGATATTACTGGGAGCAGTTTAGCTACTGGGCTTCTCAGGGCTGGACCACAGACGAGACGATTAGCACTGCTGCTGCTCGAGACGAGGAACTGCATGCTGAGGAACACCATGAACAGCTGGATGTGATGGAACCGGAGAAAGATGGACACAAGTCTTCCACTTGCTGTGATCAGATGTCAGGAGAACCGGAGAGGTTTCCGGGCGAAAACCCAGCTGACATCACAGAGCTCGTTAGCAGTTTAAACTTGGACACAGAGAAATGCGAGCATGATGGTATTAATAAAATTTTGCACTGTAGTTATGCTAATGAGCCTCATGAAGGAGGAGACCGGAAAAGACCGGCTTCATCGGGCAGCACCGGCACGGAGAAAAGCAATGAGAAACCGAAGTCCAGTACTCAGCCAAACAGAGCCAGCGAGCCAGCGAAGAGCAGCTCAAAGGAGGATGATAGTGATGAGGACGAGCCGccagagagaaaagcaaaaacGAAAAGGAGtcatGAGCTAGACGTCGATGAACTCGCTCAGATGCCTGCTGACGAAGCGTGGGAGAGTCTGGGCCTCAAACGCGGCCATCAACACAAGTTTGTGAGTGTTTTAAAGTTCCGGAGAACGCAGGAGGGAACTCGGAGGAAGGCTAAATGGAGACAGAAAGCCACCTGCAAAATCAACAAGCATGTGTTCTTTACTGAGGACGGAGAGATGGCAGAGCCCAAGATCAACAAAACTCTCCAAAAAGTGCAGAATTTCCTCCAGACGGTCCAAGCTGGGAATGACTCGGAGAAGACAGCAGCATCAGTGCTGGATGGAACGGGAGAAGGACACGGCGCTCCAAATCCACAGGAATGTAAGGAAGAAAAGGTGGAGGAGTTTAGGGAGACTACTCAGCTTGGACAGCATGGAGAAGGTGAAGAACAATTCAGCAAGCAGCAGGTCATAACCGAGCTGGAACCAGAACCACTAACGGAACCAGAGCAGGAAACACATGTTCCTTCAGACAGTAAGGAGCAGGAACTCGGAAGGGAACTTGTGCCTCTGGACATCCCAGACTTCCTCATTCCTGATGCTCCAGAAGATGAAAATGGAGcCAAGAACCAGAAGTCttcaaagaagaagaaaaagaagaaggctAGAAGGTGGAGGAGGCGGGAAGTGGAAGTGGACGTGCCTCCTGAGATCGCAGCTGAGCCGGAGTTGGCCAAGTACTGGGCTCAGCGTTATCGCCTGTTCTCTCGTTTCGATGAGGGCGTTAAACTGGATCACGGGCTGGTTTTCTGTCACGCCTGAGAAGATAGCCGAGCACATTGCTCAGAGAGTGCAGGTTGCATCCCAGACGCTGGTCATCGTCGATGCCTTCTGTGGAGTGGGAGGAAACGCCATTCAGTTTGCCCTCACTGGAAACATGGTGATCGCCATCGATATCGACCCGGTGCGATTAGCACTCGCACAGCACAACGCTGCAGTGTATGGAGTTAGTGAAAGGATCGACTTCATCCAGGCGGATTTTCTGCAGGTGGCGCCGCAGCTCCGGGCTGACG

Function

symbol description
tgs1 Orthologous to human TGS1 (trimethylguanosine synthase 1).

NR:

description
trimethylguanosine synthase isoform X2

GO: NA

KEGG:

id description
K14292 TGS1; trimethylguanosine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941305.2 True 3093 mRNA 0.50 14 2133213 2145237
XM_026941306.2 False 3071 mRNA 0.50 15 2133150 2145237
XR_003404395.2 False 2639 misc_RNA 0.52 12 2133214 2143313

Neighbor

gene id symbol gene type direction distance location
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding upstream 16970 2069361 ~ 2116180 (+)
LOC113543213 rnf31,LOC108432260 coding upstream 73133 2042200 ~ 2060017 (+)
zgc:163121 LOC108280641,LOC108432257 coding upstream 114984 1983316 ~ 2018166 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding upstream 197521 1887750 ~ 1935629 (+)
cahz cahz coding upstream 775668 1351263 ~ 1357482 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding downstream 2038 2147275 ~ 2168213 (+)
urod urod,LOC107729049,LOC107679325,LOC107714848,LOC107674254 coding downstream 23811 2169048 ~ 2176365 (+)
toe1 toe1 coding downstream 123210 2268447 ~ 2274946 (+)
tmx3a LOC108280544 coding downstream 152889 2298126 ~ 2318867 (+)
dsela dsel coding downstream 174637 2319874 ~ 2325480 (+)
G313052 NA non-coding upstream 9716 2116324 ~ 2123434 (+)
G313053 NA non-coding upstream 156435 1974099 ~ 1976715 (+)
G313016 NA non-coding upstream 238203 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 470957 1624563 ~ 1662193 (+)
G312877 NA non-coding upstream 610639 1522301 ~ 1522511 (+)
G313443 NA non-coding downstream 529196 2674433 ~ 2674646 (+)
LOC117599939 NA non-coding downstream 585978 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 589882 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 644005 2789242 ~ 2789496 (+)
LOC113543325 NA non-coding downstream 797250 2942487 ~ 2945207 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 155841 1965740 ~ 1977309 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 985774 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 1286133 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 1415859 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 1631761 413619 ~ 501389 (+)
G313112 zswim5 other downstream 36742 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 509963 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 530044 2675281 ~ 2675848 (+)
trnat-agu_12 NA other downstream 744078 2889315 ~ 2889388 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 1278330 3423567 ~ 3489367 (+)

Expression


Co-expression Network