LOC113543252 (LOC108280221)


Basic Information

Item Value
gene id LOC113543252
gene name LOC108280221
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7568121 ~ 7575380 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941350.2
TTGGAAAAGCATACAATCCCCAGCAGTGGGCGTGGTTAGCTACACTATAAAGGAAAGTATGTCTGGAGTTTCATCAACCATTACAATGAGAGCATCAGAAAAAGAGTTTGTCATGCAGAACCCAGCCACTCAATGTTATGTTCTCTTTGCTTGGCTTGTCTTATTTAGTTCCAGTCTACGAGTATCCAGAGCCGTTCAGGATTATACAGGAACAAATCAAACTCTACAGATTGAGGCTCTTAAAACTAGTATGCTGGAGTACTTAGGGATGGACAGACCGCCACCATCTAGAGGAAAGTCGTCTTATCAGGAACTAATCAGAATATACCGTCAATATCAGAACATGAGGAGGGATATGCAGTCTTTTCAGAGTGGCTCCAGTTTCTTCCTTCATACCAcagTGCAGCCATTGAATTCTCAGCAGACTGGTCCTGAATCAGTGACTCAATGGTTCAGGGCTGTTTTTCACAGGGAGTCTCATATAACAGACGAGTTTCTCTTGGCACAAGCACAGCTGCGACTTCAAAGACCTCTGGATAACAATTTTGACCAACCACTGCACAATCAGAAAATTCTGGTTAGAATACACCTAACCTCCCATTCTTATATGAAGAAGGtgttttattcaaaaaaatttaaatcaagAGGCCACAATGTTACAATGGATGTGACTTTTGCAGTTAACCGATGGCTAGTGAAGACTAGTGATGTTTTACTAATTGCTGACATTGGCTTTGTTAGAAACAAAGAAGGTGAAACTGTACCCACTCCACAGGTCTGTTTGGAACTTAAGCTAATGGATGGTAAAGTGAGAAAACCTCGTTCCACTTATGGAGAAAGCTTTGAGGATGACAGCTACTGTGGTCGGAAGTCATTGAGTGTTTCCTTTGAGGAGATCGGCTGGTCAGACTGGATTGTGGCTCCTGCTGGCTACACAATGTACTTCTGTGATGGCTCTTGCCCACACAATTACAAACCAGCCAGTATGCACACTCAGATAAAGTCACGTCTACATCGATTGACCAAAGGAGCGACGCCTCGCCCATGTTGCGTGCCAGCAGACTATGAGCCCATGATTCTCATGCACTACGATAGCCGGGGAAAGCTGAAACTAACATCTTTCAATGATTTAATCGTTACCAAATGCCACTGTGCCTAAAGGTTTTAAGCCGGCTCATGGTTACAGTTTTGGGAAAAATTTTACTGTGCTGTTAAATTTCAAAAATGGTGCACAACAATGCTGTACACGGACATGGTTACATTTCTAACATTTCGCTGATGGGACTCTTCTTCCTTGAAGGAGAAAATTCACCTGGATACTCAGTattaaaagcaaagaaaagcCTTAGTTTCACATGTAgagtttaaattatttattataacttattaatgacattttgtaTTCTTGTCTTTTCTTATGTTATAGACGAGTAAACCATTTGTGTAAGTGATgcatttagtatttaaaaaacagtaacttgaataattttgttaaatgtaattaatttatttctactTGCTGCGTATTTACtatgtgaaatgttttaattttcctGTACATACTATTTTTGTCGAATCATTCTAATACCATTGTGTATAATGGCAGGCTTACGGAAGTGTATTCAGCAGATATTAAAGTAAACAATCTGTTATGATAATTTTTCAAGGTCAGGGAGTGCCAGTAATCAAAGATATGACACTCTTTTACAGTACAATAACCTTGAACATATATATTTCTACCCCATATGGCCTTGACTAACAAGGGAACCAACAAAGGTAAAGACAGAGAATGAAGCATGTCACTGTAGCCGATGTCACTGGAgctatacattttaatgaacaaaGAAAGTGAAAAGATCACTTTGAACCCATTTATTCAGAGTAGGCATTTTACAGAGACAATCACTTTAAGAAAGCAATAAAGATACAATGGAAACATCA
>XM_026941351.2
GGCTTATGGAAACTAACTTCTCTTTTGGCTTCTAAACTGCTCACATGTGTTAACTTCCAAACCGATCAAatgtttCAGGCTCCTCATCATCCCCCCCATGGGCTAAGGAGTAGCCAGTGTCTCTCTAGCTTGAAGCAAGGCCAAGCCTCTGGCCACCCCATTCCAGTCTACGAGTATCCAGAGCCGTTCAGGATTATACAGGAACAAATCAAACTCTACAGATTGAGGCTCTTAAAACTAGTATGCTGGAGTACTTAGGGATGGACAGACCGCCACCATCTAGAGGAAAGTCGTCTTATCAGGAACTAATCAGAATATACCGTCAATATCAGAACATGAGGAGGGATATGCAGTCTTTTCAGAGTGGCTCCAGTTTCTTCCTTCATACCAcagTGCAGCCATTGAATTCTCAGCAGACTGGTCCTGAATCAGTGACTCAATGGTTCAGGGCTGTTTTTCACAGGGAGTCTCATATAACAGACGAGTTTCTCTTGGCACAAGCACAGCTGCGACTTCAAAGACCTCTGGATAACAATTTTGACCAACCACTGCACAATCAGAAAATTCTGGTTAGAATACACCTAACCTCCCATTCTTATATGAAGAAGGtgttttattcaaaaaaatttaaatcaagAGGCCACAATGTTACAATGGATGTGACTTTTGCAGTTAACCGATGGCTAGTGAAGACTAGTGATGTTTTACTAATTGCTGACATTGGCTTTGTTAGAAACAAAGAAGGTGAAACTGTACCCACTCCACAGGTCTGTTTGGAACTTAAGCTAATGGATGGTAAAGTGAGAAAACCTCGTTCCACTTATGGAGAAAGCTTTGAGGATGACAGCTACTGTGGTCGGAAGTCATTGAGTGTTTCCTTTGAGGAGATCGGCTGGTCAGACTGGATTGTGGCTCCTGCTGGCTACACAATGTACTTCTGTGATGGCTCTTGCCCACACAATTACAAACCAGCCAGTATGCACACTCAGATAAAGTCACGTCTACATCGATTGACCAAAGGAGCGACGCCTCGCCCATGTTGCGTGCCAGCAGACTATGAGCCCATGATTCTCATGCACTACGATAGCCGGGGAAAGCTGAAACTAACATCTTTCAATGATTTAATCGTTACCAAATGCCACTGTGCCTAAAGGTTTTAAGCCGGCTCATGGTTACAGTTTTGGGAAAAATTTTACTGTGCTGTTAAATTTCAAAAATGGTGCACAACAATGCTGTACACGGACATGGTTACATTTCTAACATTTCGCTGATGGGACTCTTCTTCCTTGAAGGAGAAAATTCACCTGGATACTCAGTattaaaagcaaagaaaagcCTTAGTTTCACATGTAgagtttaaattatttattataacttattaatgacattttgtaTTCTTGTCTTTTCTTATGTTATAGACGAGTAAACCATTTGTGTAAGTGATgcatttagtatttaaaaaacagtaacttgaataattttgttaaatgtaattaatttatttctactTGCTGCGTATTTACtatgtgaaatgttttaattttcctGTACATACTATTTTTGTCGAATCATTCTAATACCATTGTGTATAATGGCAGGCTTACGGAAGTGTATTCAGCAGATATTAAAGTAAACAATCTGTTATGATAATTTTTCAAGGTCAGGGAGTGCCAGTAATCAAAGATATGACACTCTTTTACAGTACAATAACCTTGAACATATATATTTCTACCCCATATGGCCTTGACTAACAAGGGAACCAACAAAGGTAAAGACAGAGAATGAAGCATGTCACTGTAGCCGATGTCACTGGAgctatacattttaatgaacaaaGAAAGTGAAAAGATCACTTTGAACCCATTTATTCAGAGTAGGCATTTTACAGAGACAATCACTTTAAGAAAGCAATAAAGATACAATGGAAACATCA
>XM_026941352.2
ggctacctGTCACTTTACTGAGAATCAGGATTAACCAATAGGAATCCAGTAGATCTGGTTTTATGTCATTTATGGCATATTTTtagcatgtttattttaatcattttcagtggaactgtcaaaAAGtgtttCAGGCTCCTCATCATCCCCCCCATGGGCTAAGGAGTAGCCAGTGTCTCTCTAGCTTGAAGCAAGGCCAAGCCTCTGGCCACCCCATTCCAGTCTACGAGTATCCAGAGCCGTTCAGGATTATACAGGAACAAATCAAACTCTACAGATTGAGGCTCTTAAAACTAGTATGCTGGAGTACTTAGGGATGGACAGACCGCCACCATCTAGAGGAAAGTCGTCTTATCAGGAACTAATCAGAATATACCGTCAATATCAGAACATGAGGAGGGATATGCAGTCTTTTCAGAGTGGCTCCAGTTTCTTCCTTCATACCAcagTGCAGCCATTGAATTCTCAGCAGACTGGTCCTGAATCAGTGACTCAATGGTTCAGGGCTGTTTTTCACAGGGAGTCTCATATAACAGACGAGTTTCTCTTGGCACAAGCACAGCTGCGACTTCAAAGACCTCTGGATAACAATTTTGACCAACCACTGCACAATCAGAAAATTCTGGTTAGAATACACCTAACCTCCCATTCTTATATGAAGAAGGtgttttattcaaaaaaatttaaatcaagAGGCCACAATGTTACAATGGATGTGACTTTTGCAGTTAACCGATGGCTAGTGAAGACTAGTGATGTTTTACTAATTGCTGACATTGGCTTTGTTAGAAACAAAGAAGGTGAAACTGTACCCACTCCACAGGTCTGTTTGGAACTTAAGCTAATGGATGGTAAAGTGAGAAAACCTCGTTCCACTTATGGAGAAAGCTTTGAGGATGACAGCTACTGTGGTCGGAAGTCATTGAGTGTTTCCTTTGAGGAGATCGGCTGGTCAGACTGGATTGTGGCTCCTGCTGGCTACACAATGTACTTCTGTGATGGCTCTTGCCCACACAATTACAAACCAGCCAGTATGCACACTCAGATAAAGTCACGTCTACATCGATTGACCAAAGGAGCGACGCCTCGCCCATGTTGCGTGCCAGCAGACTATGAGCCCATGATTCTCATGCACTACGATAGCCGGGGAAAGCTGAAACTAACATCTTTCAATGATTTAATCGTTACCAAATGCCACTGTGCCTAAAGGTTTTAAGCCGGCTCATGGTTACAGTTTTGGGAAAAATTTTACTGTGCTGTTAAATTTCAAAAATGGTGCACAACAATGCTGTACACGGACATGGTTACATTTCTAACATTTCGCTGATGGGACTCTTCTTCCTTGAAGGAGAAAATTCACCTGGATACTCAGTattaaaagcaaagaaaagcCTTAGTTTCACATGTAgagtttaaattatttattataacttattaatgacattttgtaTTCTTGTCTTTTCTTATGTTATAGACGAGTAAACCATTTGTGTAAGTGATgcatttagtatttaaaaaacagtaacttgaataattttgttaaatgtaattaatttatttctactTGCTGCGTATTTACtatgtgaaatgttttaattttcctGTACATACTATTTTTGTCGAATCATTCTAATACCATTGTGTATAATGGCAGGCTTACGGAAGTGTATTCAGCAGATATTAAAGTAAACAATCTGTTATGATAATTTTTCAAGGTCAGGGAGTGCCAGTAATCAAAGATATGACACTCTTTTACAGTACAATAACCTTGAACATATATATTTCTACCCCATATGGCCTTGACTAACAAGGGAACCAACAAAGGTAAAGACAGAGAATGAAGCATGTCACTGTAGCCGATGTCACTGGAgctatacattttaatgaacaaaGAAAGTGAAAAGATCACTTTGAACCCATTTATTCAGAGTAGGCATTTTACAGAGACAATCACTTTAAGAAAGCAATAAAGATACAATGGAAACATCA

Function

GO: NA

KEGG:

id description
K05504 GDF15; growth differentiation factor 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941350.2 False 1941 mRNA 0.39 2 7572897 7575380
XM_026941351.2 False 1933 mRNA 0.39 4 7568121 7575380
XM_026941352.2 True 1989 mRNA 0.39 4 7568466 7575380

Neighbor

gene id symbol gene type direction distance location
foxl2a foxl2 coding upstream 13196 7553561 ~ 7554925 (+)
rbp2a ret2,rbp2,LOC103044214,LOC108410483,LOC108239352 coding upstream 63424 7500421 ~ 7504697 (+)
LOC117595729 NA coding upstream 74302 7489370 ~ 7493819 (+)
brwd1 brwd1,LOC108280674,LOC108410482,LOC107677081,LOC107567576,LOC107730991,LOC107655817,LOC107747676 coding upstream 78120 7466633 ~ 7490001 (+)
LOC113543091 NA coding upstream 114413 7442104 ~ 7453708 (+)
trnau1apb tsp1l,LOC108428349,LOC107680226,LOC107589802,LOC107718075,LOC107722553,LOC107688461,LOC107585172 coding downstream 27981 7603361 ~ 7612784 (+)
lrrc6 lrrc6,LOC108280282 coding downstream 283644 7859024 ~ 7881717 (+)
kcnq3 kcnq3,LOC107749193 coding downstream 308515 7883895 ~ 7935093 (+)
LOC113543381 hhla1 coding downstream 365698 7941078 ~ 7953336 (+)
oc90 NA coding downstream 381663 7957043 ~ 7973996 (+)
G316339 NA non-coding upstream 53 7565086 ~ 7568068 (+)
G316317 NA non-coding upstream 62717 7505079 ~ 7505404 (+)
G316288 NA non-coding upstream 134697 7426461 ~ 7433424 (+)
G316000 NA non-coding upstream 438244 7127691 ~ 7129877 (+)
G315968 NA non-coding upstream 534315 7033565 ~ 7033806 (+)
LOC117599993 NA non-coding downstream 73324 7648704 ~ 7650020 (+)
G316396 NA non-coding downstream 94951 7670331 ~ 7670559 (+)
G316397 NA non-coding downstream 95910 7671290 ~ 7671520 (+)
G316398 NA non-coding downstream 96192 7671572 ~ 7671859 (+)
G316405 NA non-coding downstream 113997 7689377 ~ 7689965 (+)
G316001 NA other upstream 432620 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 623131 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 1340881 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1666555 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 2197224 5341009 ~ 5370897 (+)
crsp7 LOC108280732 other downstream 6933 7582313 ~ 7598164 (+)
G316413 NA other downstream 120154 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 176314 7751694 ~ 7756961 (+)
G316744 NA other downstream 687959 8263339 ~ 8264061 (+)
G316745 NA other downstream 693329 8268709 ~ 8269198 (+)

Expression


Co-expression Network