igsf10 (igsf10)


Basic Information

Item Value
gene id igsf10
gene name igsf10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4225498 ~ 4238706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941365.2
cacacacacaccatctaccTGAGCTACAGAAAGCGTCCTCTTGCAGTCTTTCTCTGGATAGAATTTTGGAACTTTGGATTTTTGGGAAGAAACTTGGTGGATATTATGCTTCATCACatggattaatttttttcaatctgGATTACTTTATTTCATAAacttattattttcttaaagtTGTTTTGAAGTTGCAAGAAATTCCTAGAAAGTTGGTGCAGTGGCTCTGCAGTGATGGATGCGCGAAGCTGGAGGATTTGAACAGGACTGAATGTGAGAGCGCGAGTCCGTGTCCATGATGCGCGCTTTCCGCGGAGGCTCGCGCTGCCTGCGCGCCGGATTCCTGGCGCTCGTGCTGTTTTTGCTCGAGGCTCGATGCGGGAGCAGCGCGTGTCCTGCGCCGTGCGCGTGCCACGTTCCCACCGAGGTGCACTGCACGTTTAGGTCCCTGAGCGTGATACCGAGCGGGATTCAGCCAGCTGTGAAAAGAATTAACCTGGGATACAACAGTCTTACAATCCTAAAAGAACATGAACTGTCTGGTCTGGAAAGCTTGGAGTTGTTAATGCTGCACAGTAACACCATCCAAACCATTGAGGACAGGGCGTTCAGAGACCTAAAGGCTCTGCAGGTATTAAAAATGAGTTACAATAGAGTCAAAGAGCTACATAAAGAGACATTTCAAGGCCTGGACAATTTGTTGCGTCTCTATATGGACCATAATACCATCGAATTCATCCATCCAGAAGCTTTCTATGGTCTGACGTCTCTTCAATTAGTCAATCTCGAAGGCAACATACTCCAGCAGCTTCATCCAGACACTTTTATAACTCTGAGATACAACcagatattcaaatattcatcaatAAAGACCATATATCTATCAGAAAATGCACTGACCACACTACCTGCTAAAGTGTTCACTGGTTGCTACCAGCTAGAGAATCTCTTTCTCAGTGGAAACCCTTGGTCGTGTGATTGTCGAATGGACTGGCTTGCAGCATGGATCGAAAGAAATCCAGGTGTCCTGAAATGCAAAAGAGACAGGAAGTTTTCTGGAGAACAGATGTGCCCCATCTGTAAATCTCCACTTACCTCCAGAGGCAGCAGTATTATTTATCTGTCAAGTCAATCCTACACATGTTCTAAGCCATGGATTCATTCCCATGTGAAACAGAGAAATATCACAATGGAGGAGAACAGCTATGCCCCAGTTCTTCCCAAAGACTTTATTGCTCCAATTGGggtgatggaaatgaaaatcaCAGACCAGTATAACAATGATGCCAATGTTGCCTGTGTTGTACAGAGGCCAGGGGGATTGGACAACTTGAATGTAACCCATGGAGTAATGGGTGATAATGTTACAACACTCAGTGCAACTGTGACTACGTCACTTGTTTGTAATATTGATTACGATCACATTCGTCAGCTTTGGGGCATCTTGGCCTCTTACAGTGATTCTCCATTGAGACTTGAGAGGGAATTACTTCTCACCATGTCACCAGAAATGATCTACAAATACAAGCAAGCAAGATCAGCTGATAGTGAAATCTTCACAGAGATTGAGGCAGAAATTAAGGCAAATCCTGCATGGTTAATGCAAGGTACAATTAACTTACAGCTGGACCTTACTACCACTACATATTCAACACTCCACATTAAATATTTGTCCAATATTGAAATGAATATTGAAAGCAATAAAGTACGAAGAGACCGATTCAGCTGGACTATGATCAAAAAGCACAACCAGACTAAGACTGAGTTTTTAGTACTTTCTGGTGGTGTGGCTGAACTGAAATGTGAGACCTATGGTGATCCCAAACCCTCCATAGAGTGGATATTACCAGATGGAATCAAGGTGCGTGCACCATATAGCAGCGAGGACCGGAGGATAGTAATATTAGATAATGGGAAGCTTACTTTAAGAGCAGCAGATAGCTCTGATGCTGGTATTTACCACTGCATTGCCACTAATTATTTAGATGCAGATGTACTTTCTTTTAGGGTTACCGTACTGTCCCCAGATGTTGAGGAGGAGGATGTCAATGGGGTTCGGCTTTCACGAACAGTGGGTGGGAGCTTAGTTCTTGATTGTGAAACAAACGGTGTCCCACAAGCCTCTGTCCAATGGATACTACCAGACCACACTGTTATGGACCGGCCTTTTGGAAACAGGAAACTCTACCCAAATGGTACTTTAGCAATACATCCactgactgagagagacagggggTTTTACAGATGCATAGCTGCTAACCATCTTGGGGTAGATTTATTATCCTCCCTAGTGACTGTTTCTAGTGATGGGTCCAAAATTGTGACACTGACCAGCATAGATGGGTCTGGTGATGATGTACAGCTGGGCAAAGACGATAACCATGTGATTTTCCGTGAAGGTCTTTCTAGTAGAATTAGCCAGGAATCAAGAACAGTTACTTCAGACAGACCATACCCTAGGCTCAGGCATTCACTTCGCCATGGAGTAACTACAAATAGAAGGGGAGGTAGCAGACACACCGGGTGGTCTAGAAGGGTGTTTGACAAAGCATCCAGGAGAGTAGACCCGGAGAGATTAGCAGATTATATCAAGAGATCTCAAAATAAGAAATCAGGGAAAGATACAGATGACAGTATAAACCCATCAGATAAATCTCAAGCTAAAGTAGAACTTTCTGTTGATGATGAGACAGGTTCAGGGAGTATAGTGTTTGAAGGTGATGTTTCCATGCCAGATCAAGCCAAATCAAGtacagaaaatccagaagatgTTTATGGTAGTGTTATGACCACATATCACCTACTAGAGGATGATCAGAATAAGGCTGCTGAAATCACAGAGATACTAAGAGATGATCTAAGCAATGTTataacaacaacagaaaacatgAGAACAATAACAACAGGTTCCTACTCTTACACAGATGCCAGCCCAATGGTGCCAAGTGTTACTCTTAGCAGTTATGAATTTCAAAAAGATGAGACAACACCATTTATAGCCACCCAAGATTATAATGTTGGTCCTAGTAGTAGCAAATCTTACAGTTCAGAAAGAAGCACAAATACACCTTTGCAACCATTTACCGTAAAATTTATGGTTACTGAGACCATGGATGAAATGGAACTTCAATTTTCTGGGGATATGCCAGAGACTGCAACTGAGGTACTGCCACATCTCAACTCTCAGATCCCTAATGTGACACCAATGATGAATCAACCAACACAAAGAGTGAATCCAGTAGTACACATGTCTACAGACCCTGAGAGCCAAACCACTTTTACAGCAGTCACTACAACAGAAAGAGAACAAGACGAGATTACGGTTCATACTACTCAAAGAATCAAGTCTCCTCATCTGCCCCCTGGATCTACCATCATCTCCCACCAGCAAATACACATTATTCCTCCTAATAAAAAGCGGCCAGGAAGGAGACGTAATTTATTCAGTAGGCGCAGAATTATTCGGCCAAACAAGATTACAGATATACAGTCCTTACTGGATAAGCTCAAAAGGCCATCTGTTGAGTATGAGAGCAATGCCACTGTCTCATACACAGTGGAACTGACCACAAATTGTGATAATGAGAAAGGAAGAATGTCTACTGTAAAATCCATCCAAGATTCAACTAGCAGATCTCAAGTGTCGACATCTTTAGGAAAAACGGAAAAATTCATCACAACAACTCTGAGCACCCCATTTATTACTTCATCAATGATATCCCCTAAGTCCACTACATTTAAAAGTGAGGGTCAATTGAAGTCTGATAGTTCCAGTGAATATATTCGCTCTACAAATGTCCCTGAGCAAAAACCTACAGAAGATCCAATGACAGAAGTTTCAACCACTGTtgcaactacaactacaacaactAAGGCTTCTAAAGTCATACAGGGAAAGATACCATGGCATAGATTTTTCGGAAGCAAAGAGGGTCAGCGGGAAATTCTTAAGAGACTTAGAAAACCATCCAAACCATCCCTAATAATAAAGAGCACAACAACAGTCAGAACCATGACCACAACTGCACCATCAAGGGCCTTAACTGCACTACCTACAGCTGAGTCAATGGCTGCACCAATGACTGCCATGCCTCCTGTCACACAAAGAAATCAAGGCAATTTGGGGATGCCCTCTGATAAGTTGTCAAACTTCACAGAATCAAAGAATTCTTATGAGGTCATCACATTATTTACAACTGTTAATCCATCCAGAAAATACCACAAAACAACAGTAACCTACATGCCAGTAACTACACCTATGTATGGTTCCAGGGTATCCACAGCTACAACATCCTACATTACACCAATTCCACCATCCCTAACAACTACTAAAACGACATACAAGGAAGATACATTTGAGTTCTCAGGCTCTTACTCTGGAGGGTCTGGGGGATTTGGTGGTAGATCTTGGGGAAATCGAAAGCCAGGTTTCCACAGACGACGTTTCAGAGGAAGAAAGCCAGTTAAAAAATCTACCACACAAGCTCCAACTACCAAATCTGCTACATCTGAAACCACCTCTTTAACGCCACAGACAACCTCACGAGTAACCAAGCCCTTGTATATACCTACTATAGAGGTTGCAAGGTCCTCTATacactcatcatctgacataaTAGACTCTGACAAGGAAGAGTGGAGAAACACAGCCAAACCTACCAACTTTCCAAAAACTCATTCTATAGCAAGTGATCCTTCACCAACACAGAGCTTTTCTTATACAACTAATATAGCAACGCCATACATCACACCACAGtcagaaaaccagagaaccaaagcaagaatgaacacaaataaaagAATTCCCCCACGAAGAGGTGGAAGGTATCAAACTCAGAGACCTGTGATTCAAAGAATAAGGCCAAATTTAACTAATAGAAACAGGGACCATTTTAAACAACCAAGAGTAACCGCTTCCCCTGACACTAAAAGGGATGGATCTAAAAAGAGGACTAGCACCGAGAAGACACTAACCTTTGACACAGTGACTGTCGTCACAGCAGAAGAAAACAAGACGATCACGTCATTTCCATCCATCAGTGATATCTCTAATAAAATTCCCAATACTTATGATCACACCACAGTGTATGACACTATATCATCAACTACCAATGGATTTGAATCATCTACAAAGGATGTAACATCTAAGCCAAGAATTGTTGGGGGACATGCAGCCAGTTTTACAGTTGAGTCAAACTCTGATGCATTCCTTCCTTGTGAGGCTACAGGTAACCCTGAACCTGTCATCAGCTGGAAACGGTTCTCCCCAAGCACAGgGACTACACTGACCATTAAAGGAAAAGTTGGTAAACTTGAGGTGTTCGGGAATGGAACATTGTTGATCCAGAATGCAAATGTCAAAGACCGAGGACAATACCTTTGTCTGGCTGAGAATGCTTATGGGTCTGACAaactcactgtcatgctgtCAGTGGTGGCTTATCCTTCCCAGATATTGGAGTCAAAGGTTCGAGAGATCAAAGCCCACTCTGGTGAAACAGTTGATCTGAAATGCAAGACAGAAGGAAGGCCAGTGCCAGTTGTGTCATGGATTCTAGCAAACCGCACTCAAGTTAGGGGTCAAAACAATGGTCATGGCAGAGTAACCATTACACCAGAAGGTACTCTGGTCATCCAACAGGTGTCAGTATATGATCGAGGACATTATAAGTGCATTGCAAGTAACCCAGCTGGTATAGATACAGTGACTGTGCGTCTTCAGGTGGTGGCAGCACCCCCTGGCATTTTGGAAGAGAAGCGGCAGCTGGTGAGGGCTGATGTTGGGCAGAGTGTGTGGATGCCCTGTACAGCACAAGGAGACCCTCAACCTACTACACACTGGGTTTTGTTGGATGGGACAGTTATAATGCCACTTCACACCAGCTCCAGAGTGTACTCATTTCCTAATGGTACCCTTCACCTGAAAAGCCTGGATATCTCTGACAGTGGAAAATATGAATGCATTGCTACAAGTTCCACAGGATCTGAGAGGCGAGTGGTCACACTATCTgtggaaaaaacagaaattgcCCCCCAAATAACTGAAACATCAGGCCGGAGGACTGAGCTGGGATATGGCAGCCAACTTCGTTTGAACTGCTCTGCAACTGGCATTCCCAAACCCCAAATTATTTGGAGACTTCCATCCAAAGCCCTTGTGAACCAGTGGCACagAATGGGCAGCCGTATCCAGGTGCTGGAGAATGGCACACTTGTCATTGACTCAGTTAGTGACAAGGATGCTGGAGACTACCTATGTGTTGCACGCAGCAATGCTGGAGATGATCTACAACTAATGAAAGTCACTGTGTCCATGAAACCAGCTAAGATTGAACCCAAGTTTGTTGGGAAGAAACAGGTACCATATGGCAAGGAACTAAAGGTAGACTGCAAGGCTTCTGGTGCCCCTGTACCAGAGATTTCATGGGGCTTGCCAGATGGCACATTGGTCAACAATGCTCTTCAAGCAGATGGCAGAATAAGCAGTCGATCCAAACGTTATATATTGTTTGATAATGGGACGCTTTACCTGAATAAGGTGGGGATAGATGAAGAAGGCGACTATACCTGTTATGCAGAGAACACCTTAGGCAAGGATGAAATGCATGTTCACATCACGGTTGTGAGTGCAGCACCTCGGATACGCCCCTCAGCCCTCACTTATGCCAAAGTCAAGCCAGGAGGGAACGTCCGCTTTGACTGTGAGGCCATAGGGGAACCCAAACCAAAGATTCTGTGGATGCTACCATCCAGTGACATGATTGCTGCATCAAATGAACGATACTTGATGCATGTCAATGGATCTCTTGATATACGCAATGTAAAATTAGCTGATGCTGGAGAGTATGTTTGCATAGCTCGGAACGCTGCAGGTGACGAGAGCAAAGTGTTCAAGTTGGAGATGGATGGAAATCCACCCATCATCAATGGCTATTACCAGAACAGGACAGTTGTTAAGGATACAGCAGAAAAGTATTCTAGGAAGTTAATAGACTGCAAGGCAGAAGGAGATCCTCCTCCAAAGATCACATGGATAATGCCAGACAATATCTTTCTTTCGGCTCCTTACTATGGGAGCAGAATTATTGTCCATTACAATGGGACTCTAGAGATCCGCAATGTTAGACCTACAGACACTGCTGAGTTTATTTGCATGGCACGGAATGATGGGGGTGAAGCTGTCTTGGTAATACACCTGGAGGTTACCAACCAACTTATGAGGCCTATCTTTAAAAACCCCTTTAACGAGAGAGTGGGGACTCGACTAGGGAAAACTACAGTACTTAACTGTTCTGCTGATGGAAATCCACCTCCAGATATGATCTGGACTTTACCCAATGGTACCCAGTTAACTGTAGGGCCTAATGGAGGATCTCAACATCACCTGGGCAGTGATGGCACATTTGTCATATATAATCCGAGCAAAGGGGATGCTGGCAAGTATCGCTGTGCTGCAAAGAACAAGGTTGGGTACATTGAGAAACTGATTATCCTAGAGGTTGGACAAAAGCCTTACATTCTGACACGGCCACGAGGGATTATCCGCAGCATGTCTGGAGAACCCCTGTTCCTACACTGTTTGGCTGATGGAAGCCCTCGTCCCAACATCTTCTGGACCATGCCAGGAGGTCATGTCATAAGCCGTTCTCAGATAACTGGTCGCTACCAGCTAATGGACAATGGTACACTGGTCATCCATCAGACCAATTTACATGACCGTGGGAATTATGTGTGCCATGCAAAGAATAATGTAGGGGATGCAGTTTTAACTGTGCCTGTCATCATAATTGCATACAGTCCCCGCATCACTAATGGACCCCCACCAAATGTAAAGACAACAACAGGAACTTCAGTGCAGCTAAACTGCATTGCTGTTGGAATTCCAAAACCAGAAATCACCTGGGAACTGCCTGACCGATCTGTTCTCTCCACAGCCGGAAAGGGACGTTCTGCAGGCAGTGAGCTActccatccacagggcacgcTAGTAATTCAGAAGCCAACAAGAGCTGACTCTGGCCCTTATAAGTGCTTAGCAACTAATAATCATGGGACAGACACCAGAGTCACATATATGACAGTTATTTAAAACAGGCAATAACCATCCACCAATGCTCTTCAAATCTTCAAACAGTTGTCAGATGGCAATATTTCCAAAAACTGCTCTGTATATTAAGTGCTGTTATGGCATATTTCATAATTTAGAGGGCTAGCGGTAGTAAATgttctacatttatttaaccaTGTATCACTCTAAGATTCGCATGGGTGGTATACcaagaaagatggaaagaaggaTGAATGTGTGGAATAGACTGCACCGATCTGCTGTTTggcatgaaaataaatttgGGACAAGGC

Function

symbol description
igsf10 Acts upstream of or within gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Orthologous to human IGSF10 (immunoglobulin superfamily member 10).

NR:

description
PREDICTED: immunoglobulin superfamily member 10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941365.2 True 8358 mRNA 0.44 7 4225498 4238706

Neighbor

gene id symbol gene type direction distance location
LOC113543359 LOC108280252 coding upstream 42069 4174793 ~ 4183429 (+)
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding upstream 257147 3962755 ~ 3968351 (+)
trnap-ugg_21 NA coding upstream 278492 3946935 ~ 3947006 (+)
pmvk pmvk coding upstream 408644 3813253 ~ 3816854 (+)
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding upstream 562811 3647747 ~ 3662687 (+)
p2ry12 LOC108280198 coding downstream 13164 4251870 ~ 4256834 (+)
LOC113543045 LOC108280189 coding downstream 19659 4258365 ~ 4263286 (+)
LOC113543038 LOC108280160,LOC108424050 coding downstream 28384 4267090 ~ 4276958 (+)
LOC113543011 LOC108280892 coding downstream 44461 4283167 ~ 4290110 (+)
wdr53 wdr53 coding downstream 62093 4300799 ~ 4308052 (+)
G314222 NA non-coding upstream 225184 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 329813 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 379403 3845857 ~ 3846095 (+)
G313949 NA non-coding upstream 405589 3773070 ~ 3819909 (+)
G314362 LOC108280893 non-coding downstream 51548 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 56159 4294865 ~ 4295074 (+)
G314402 NA non-coding downstream 140931 4379637 ~ 4384865 (+)
G314404 NA non-coding downstream 278895 4517601 ~ 4527820 (+)
G314609 NA non-coding downstream 541232 4779938 ~ 4780145 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 736131 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1336110 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1549650 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1563099 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 2039821 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 353734 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 549142 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 662764 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 849133 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 962315 5201021 ~ 5216591 (+)

Expression


Co-expression Network