atg5 (atg5,LOC107697282)


Basic Information

Item Value
gene id atg5
gene name atg5,LOC107697282
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3502067 ~ 3523213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941367.2
GTAGTGTGCGATGCACTACGTTTGAcgtaccctatgtagtgcacttgtaTAGGGGATGTGTAGCAATTTGGGACGCACCTTGGGACTAAGCTTGACACCTCGCTGTCAATGTATTTGCTAGCTTTCGTTGCCTTCCTTTAGCTTAGCCTGGTTAAAACCTTCTCTGTAAACACAGAGCTGTTCAGTGTTTGGTAAATATTTGGTAAATATTCCAAACTAGCCATGTTTCcagatatttgtattttttcgCGTTGTTCGTAAGTAAAGGGGGTTCGGCTGTCACGGATAAGAAGAAGCGCGTCGAGTGTTAAACCTGAACATATCATATGTTTCACCTGGAGGGCTGCGATAATGGCAGATGACAAAGATGTACTTCGAGATGTGTGGTTTGGCCGGATACCGGCGTGCTTCACGCTTTATCCAGATGAAGTCACAGAGAGAGAAGCCGAACCATTTTATCTTCTCCTTCCGAGGGTCAGTTATCTGACGCTAGTGACCGACAAGGTCAAGAAGCACTTTCTGAAAGTCGTAAAAGCCGAAGATGTAGAGGAAATGTGGTTTGAATATGAAGGCACACCTCTGAAATGGCACTATCCAATCGGAGTATTATTCGATCTTCATGCTTCAAATACGGCTCTCCCCTGGAATATCACTGTGCACTTTAAGCATTTTCCTGATCGGGACTTGCTCCGCTGCTCCTCGAGCGCTGTGATAGAAGCCCATTTTATGTCCACCATCAAAGAAGCAGACGCATTTAAGCACAAGGGCCAGGTCATCAATGACATGCAGAAAAAAGATCACAAGCAGCTGTGGATGGGCCTGCAGAACGATAAATTTGACCAGTTCTGGGCCATGAACCGCAAACTGATGGAATATCCAACCGAAGAGGGCGGCTTTCGCTATATTCCTTTCAGAATATACCAGACGCTGAGCGACAGGCCGTTCATCCAGAAGCTGTTCCGGCCTGTTTCTTCCGAAGGCCACGCTCTCACCCTGGGAGATCTGCTCAAAGAGATGTTCCCTGCTGCCATGTGCCAGGATGATGATCCAAAGAAATACCAAGTGGTGATTCACGGCATTGAACCGCTGTTCGAGACGCCCATCCAGTGGCTCAGTGAGCACCTGAGCCATCCAGACAACTTCCTCCACATCTGCATCGTCCCGGCGCCGAGCGACTGAACCCTGAACTGCCCAGGTGGCCCAAGAATGACTCTGCTGCTCCCATCATTGAAGAGGGACCCTTCCAGAAGAGTGTATTCACTTTCTCACACTTCCTGCATTAACATTTGCCTACCTGGCCCGCCACCCCCACTGCTATGAGATTGGTGGAATGGAAATATTGTTCCTTTCTTATGCATGCCATAGGGATGTATATTACACGTTTACTGTCTCAATATCCAAGTATTACCTTGGTATTTTTATGTAACAAATTAGCCTACTAGTGACTACAGTGTGCTCAGAAATGTTGCCATTATCTCTTTTTTCAGATGAGATTCAAATATTTTCTCCACACTAAGTTTACTATGCTAACTAACCTTTTTACATCCCTGGTAtgcatctctctccctccctctctctttctctctctctctttctgatgaGCTCTCTTTACATGTTGCCTTAGAACTCACTCATCTTCACACTGGCATGATGAGGCACACTCCTGATTTTGTCCTGGTTTTGCTGAGTGACAGGTATCCCTGGGTCAGAAAGGCCAGAGCTTAAGTTTTGATCAGCCAGTCGCCACTAgcctttgttttcattttgtcagCTCATTACGGTGCTctcaataaaataatgatgtCCACAATAAACCGTTAAACACTGCACTTAATGTTAAGGTCTAACATTAAGTAGCTAGGCTTGCTTTTATAATGTGTAATCAAAACTAGTAACAAGGTTTACTAGAATGCAAGCTAGCATTAggaaacaaacaataaatttattagctagccaaGTGAAAGCTCCAATGTCCTTGCCCAGTCCCATGTATTTATTTCCTAGAAACCGAACAGTTAGCTAGTTATGTGCAACAATACACGCAAAGTGAGATGAATgacaaaaaagagaagagaagaggagatggCGCTTATTTCGAACTTGACAAAAAGTCACTATGTTGTTGGTGATATTTTGGATATGAGATTGTGTTTAATACTCGCGTCGCAggtaaaaatattaattgtgtcAGGCTAGcgtgtttatttttagtttgatGTCTTTACTCGTGAGATGACTGCGTTGTTAGCAAGAAAATTATATGACAACTTTGTTCTGAAATTTCaacagtgtttccacatacctgcatgCTGCTGACTCAGAAAAGAGCGTCCGTCATCTGCGTAAAGCAATTAATCCGAAGAAACGTGAAACGTGCACTATAGTTACGGCATTGAGGTGCATGAAGTCAATAAAGTCAACATTTAAATATGCTTACAAAatgaaaagttttgttttgCAAAGTCAACAGGGAGtagggtttattttctttttcaagtcAGTGAATCTACATGCCTGTCAACTATTAATAAAATCCTGTTTGTCCCAGGTACTCAGGTTACTCATATATCCACCCCTGTATTATAGTGATGCCATACGATCAAGTTTGTGATTGGCTgttcaaatatgcattaagctCTGCCCTCGTTTCCCCAGGGACGCCTGTGATTCTGCAAAATGAGGATGCACATCGGTGCACATTTTGCAGTATTTACAGCAGCTAACTAACacactatttattcatttagatcTTCCCTTAGAACTTGGTTAATTATCATGAACCACTAAACCCAGCATCTCTGGGGTGGGAAGTTATTACCAATGTTTTATAGGTGCATGCAGGGAGTTGAAAGAGATTTGAAAATTGCAAATGGAATTATGTCCAAGTTGTGGTCACAAACTGTCATTGCTCAATTCCTGTGTGTAGGCTCAGTCTGGGAGCAGAAATGTCATTCAGACAGGtgatttgcataaaaaaataactaatcCAAACTATTATAACATCTTACAAATATAAAGACATACGTTCTTGTgtcttggttttttttgtttgttttggtttgggttttttttgttttgttttgtttttataaataaaaacgaCAGCCTGTTCTTCGTCTGTTGTGGTTAACACTGGATGTCTGTCGTAAGGGAACTGCCCCATAATCTCCTGATTGGAAGCGCAGTACATATAgagatttattacatttaacacattttagctGATACAGTACAATATCTAAACAGCTCTGATTATACAACCGCTAGACAGAACTGTTTAGGCTGGcaacatttgtttgtgtttatttcgtTCGGAGGGGACGTGACGGAGGAGGTTGGAGCAGGGAGCAGACGATTAGCAGCTGAGAGTGATTATTTGCTTATAGGAATAAGTGAGTGTACACTCGCAGACAGATGGGGAGAGcaaatactcaaaccacacCAGGTCACTTCTCAGCAAACTGACTGGAAGACCTGGGGCTTCGGATctttgaaatgtttgtgttgggggatttttttttttttttttttattggactCCAGATGTGTGCAGTGATTGTAATTAATCTGCTGAAATGTCGATACTGAAATCTCCACATTCTTTCAGAACAAATGTGATCAAAcgaatctttctttcttttttcatgcagtggcttgcttttctgtcttttgcTACTTAAAAAGTgcttaatatataattaaaacaatattttgtaaCTAA

Function

symbol description
atg5 Acts upstream of or within several processes, including autophagosome assembly; heart development; and regulation of skeletal muscle tissue regeneration. Predicted to be located in cytoplasm and membrane. Predicted to be part of Atg12-Atg5-Atg16 complex. Predicted to be active in phagophore assembly site membrane. Is expressed in several structures, including central nervous system; head; liver; male organism; and tail bud. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 25. Orthologous to human ATG5 (autophagy related 5).

NR:

description
PREDICTED: autophagy protein 5 isoform X1

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007399 nervous system development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08339 ATG5; autophagy-related protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941367.2 True 3721 mRNA 0.42 8 3502067 3523213

Neighbor

gene id symbol gene type direction distance location
sall3a sall3,LOC108435487 coding upstream 184116 3298344 ~ 3317951 (+)
nrn1b LOC108280273 coding upstream 419316 3080016 ~ 3082751 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding upstream 482604 3014486 ~ 3019463 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding upstream 516765 2975646 ~ 2985302 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding upstream 623352 2872529 ~ 2878715 (+)
trnas-aga_13 NA coding downstream 102203 3625416 ~ 3625497 (+)
trnas-aga_14 NA coding downstream 102747 3625960 ~ 3626030 (+)
trnas-aga_16 NA coding downstream 104819 3628032 ~ 3628113 (+)
LOC113543357 NA coding downstream 119102 3642315 ~ 3646672 (+)
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding downstream 124534 3647747 ~ 3662687 (+)
G313796 NA non-coding upstream 202761 3299098 ~ 3299306 (+)
G313607 NA non-coding upstream 425697 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 556860 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 712571 2789242 ~ 2789496 (+)
LOC117599939 NA non-coding upstream 765479 2731215 ~ 2736588 (+)
G313853 NA non-coding downstream 1096 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 249857 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 283935 3807148 ~ 3808690 (+)
G313990 NA non-coding downstream 322644 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 364814 3888027 ~ 3895685 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 12700 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 612679 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 826219 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 839668 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1316390 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1069227 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1264635 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1378257 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1564626 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1677808 5201021 ~ 5216591 (+)

Expression


Co-expression Network