slco5a1b (LOC108280428)


Basic Information

Item Value
gene id slco5a1b
gene name LOC108280428
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8386512 ~ 8422245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941384.2
GTGAGTCAGGGAGGGTCTGCAGGAAGAGCGCCGACAGGTTTTGcgtctcctcttcctccctccttctcgTACGTCAATCCCTCCAtcatctctctcttcactgcacATCGCCCTGGAAGAAAACCTTTACAGAGTGAAAGCTGGAAAAGCAGCGGAATGGATTTTTAGCGcgcttgtctcatggatgtatGAGAGGAGGAATGGATTCCCTGCACCTGCTTCTGTCTCTTCTCGCTCTCCAAGTGAACCTCCTGGCCGCGGCCGAGGGCAGATTCGGTTGCCTATTTGAGGAGAATCTGTGTATGAACTATGAGATTTGTTTCAATGATGGCATGTTTGGCCATTGTCAGACAATGATGGGAGCGGATGTGTACACATACGATATCACACCAGCGACCCTGCAAAGATTTCGTACACTACTCTTGAAACTTTCACTTCGAGGCCTGTCATGGCAAGATGATGTCACTCAGCAGGTCCTGTCTAAAGAATTTTCTAAACTACACAGGATCCCCCTTTCACCACCTGACTCAAGACAAATGGTACAGACAGCTGCTGTGGAAGATGAAAGCCTGAAGCCATTGGAAGAGAAATTCAGCAAAAGTCTTCAGAAGTATTTGCTGAACCTGAGTCTGCTGTCTAAACTAGATGGTCAGGTCACCAAAACGAAGTCTTCTCTGCCATCAGCGTATTATCGTTCTGGAAAACCAAACATTAAACTCAGCTCGATCCCACCGGAGTTCACCCCAGATTCACCCTATCAGTCAGCTTCTTTCCCTGACCTTACTCGTTATCAGAGTGACACAGCGTATTACATGCAGCGACAGCAGGATGGTTCAAACTTCCCTCTTACTGCCCTAAAGCAGTATGTGTCTCAAAAAATGGCATCTGGGCAGAGAGGTAGACCAAAACCAGAACCAGTAGTCTCAAAGGGTGGATCCTCACAGTTGCCTGTCAAAGAACCCCTGACTCCAGTAGATGAGACCTTTATCCAAAATGTTCTACGCAATGTAGGAAGGCACAATGTAGATGTGGAGAGTTTGAGTGCAGCAGATCTGGACCAGCTGGCCTCTCTCATAGCTGATGCTCTTCAGGTAGTGGAGAAGCAAGCGGAAAAGGGATACAGACCCAGAGACCTGCAAACAGAAGACCTGCAAACTGAAGACCAGGAAACTGGAGaccaagaaactggagaactgcTGCCCAATGTTCAGCAGCCAGGAGCAGATTCATGGGATGAACATACCTCAGAGTCAGTAAGGCAAATAAGTGAAGAAATTTCACCAGTCAGTCAAATATTTGAGACCATGCCATCCATGTCAGGGGGACAAAACAGGAAGGAGGAGAGATCTAATGCAGACCATAAGGAAATAGAATTGTTGGGGAAGTTGCTAGAGTATCTGGATAAGACCTCCCCGTCAGAGCCGAGCCCGCCTGTAAAGGGGCAGGGCATATCCGTGGAGAGAGTACACAGCAGGACAACCCAGATGGATGTAAAAGTACAGAAGAAGGCCATGGaacaggtggaggaggtggagggcTGGGTGGAGGCTGCAGCTCTAGCACCCTCTTCTGTCCTAGAGATGGATATCACCCCGCACCGCCAAAATGTGAAAGTGCAAGATCTGCAACTTGATGTACAGACCAACAGTAACAATGATGTCTATGGCTACATCATTACAGATACTGATTCTCTTCCCACTGATCAGGGTTTGCACCTGATGGAGCTGTTGTGTCGCAAAGCAAAGATCCAGATGACTGATTTCCTTGAGCTTTCTGTTGTTGGTCCAGCCGTGACATTCCAGGTCCGCACTAATGATCAGAATATTACCACAGCTGCCATTGCCAATGTGGCTGttaGTCAGAAAGCTGCACTAGAGAAAGAGGCTGGAGTCACCATTTTGGAGGCAGGAGTTACCGATAAGACTAAGTTGAGTCAAATTCCTACAAGGTACAGCCACTCTGAATCTATGAAGTTCCTCATCCTTACGGTAATATCCATTGTGTGCATCATCGTGGTCCTGCTGATCTCTAGCATTATCTACTGTCTGCGCCATCGATCGCATCACAAACTCAAAGAGAAACTCACCAATCTCAGCACAGACCCAGCTACTGAAGCCACAGCTACCTACCAGGAGCTGTGTAGGCAGCGGATGGCTGTGAAGCCCCCAGTGGAAAGGGCGGAGCTTCGACAGTCCTCTCGCATAAACAGTGTGTCTTCTCAGCTGAGTGATGGACCAATTCTTAGCCCCTCTGCCCGCACGAGCACTTCCTCCTGGAGTGAAGAGCCTGCACACACGAACATGGACATCTCCACTGGTCATATGATACTGTCATATATGGAGGATCACCTGAAGAATAAGAACAGGTTGGAGAAGGAGTGGGAAGCTCTGTGTGCCTATCAGGCAGAACCGAACACCTGCAGTGTTGGCCAGAGAGACTCCAATGCCAAGAAGAACCGCACGACCACTATCATACCTTATGATCATTCTAGGATTTGCCTGAAAGTGGAGAACAGCCAAGGGAACTCTGAATACATCAATGCTAGTCCTATTATGGATCATGACCCCAGGAACCCAGCTTACATTGCCACTCAAGGTCCTCTGCCCTCGACTGTTTCTGACTTCTGGCAGatGGTGTGGGAAAGCGGGTGTGTGGTGATCGTCATGCTGACTCCTCTTACAGAAAGTGGAGTTAAACAGTGTTACCACTACTGGCCAGATGAGGGCTCTAACCTCTACCATATATACGAGGTTAACCTGGTGTCAGAACATGTGTGGTGTGAGGATTTCCTGGTTCGTAGCTTTTACttgaagaacatgcaaaccaATGAAAGTCGCACAGTCACCCAGTTCCATTACCACACCTGGCTCAACCAGCATACACCAGAGACCAGCCAGGCTCTGCTCGACTTCCGCAGaaaagtaaataaatgctaCAGAGGAAGGTCCTGCCCCATCATAGTTCACTGCAGtgatggAGCAGGGAGGACTGGGACATACATACTGATTGATATGGTTCTGAATAAGATGGCTAAAGGTGCTAAAGAGATTGATATTGCTGCTACACTGGAACACCTGAGAGATCAGAGACCTGGCATGGTTCAAACCAAggaGCAGTTTGAGTTTGCATTGACTGCAGTAGCAGAAGAGGTGAACGCTATCCTCAAATCCCTTCCTTAGTGAGAAATCAAGCAGCAAGAGAcatcccctctccctctccttcttgttttctttctcattctctgcCTCATTCTCTCTATCAGGATGGTGTATATAAAGTTTCATTAAAAgcttttcccccatttttttaTGTGTACTGGCCTCGCAGTGCAGACATTCTattgatataaaaaaagacGTTATATGTTTGGATATATTAATCATATAGCTTTAGGTTTTTCCTCCACATGTAaatgtgcatttcatttttggccacTCTTAAATCTCCGGTGGCTGGTGGCCCATGTTTAGTCATTGTCAAATGTAATACTGTGATAAGCTACCAATAGCTTGTTTCCAATGCTGAAAAGGACATTTAATACATCTGCATCTAAAATTATGCTACAATAACAAGAGTAACTGAAGTTGTTTATTGATATTACATAACATGCAGCTATGGAAAGTGCTCTTGAAGATGTACTCGGTAAAGGCCCAAACGCTGGTAAATGTACCTCTGTTTAAAGGAATAAATTCAGTATCAAGGTCTgcaaatacagttttatttcactttggtTGGTTTATGTACTGCCACTGAGAATGGTCTATATATGGTGCTGGTGCATGTATATAGGTGCAGCAGTGCTGCTCGGCCTTTGTGTCACTGCTTGGCTGAGAGTCcaccaaacaacaaaaaatccaGCTAAATGCAGACCTGTGATCTGAAGCTGATACTGATTGAGGACAGATTAACATAAGAGGCAGattaacataaataatatatggAAAATGATTAACTAGAATCTGAAACTGTGCACTCAAAAGGTGGACCAACATGGTAGGTGTGTAATAAAGTAAACAGTAATTGTACAGTGTTTGACTGTATACTTGGACCAGCCCTATACACACTAACATAACACTACCaagtcagtgtcactgctgtgctgagaacagtacaccacccaaataatatctggtgaGTGGTGGTGCTATGGTGGTGCCGAAAGATGGGTTGAGCGAAGCTTACAACGtgtgcatagcaacagataGCCTACAGTCAGTAGACATAAGTACACTTATAAGTAAGTGACCAATGTGTGTAGGAGCAAAGAGTGGATACTGAGTCTCTTTTTCTTACACTAGTTGGTCTAAGGTTTGGCTTGACATAATTAAATTGTATAATGTGCTGTGATGGTATATTGGGCAGACTGCAGAGGTTTGGCTAGTAAAAGATGTACTACCCTGTTCTGCTAATTACACCTCTTTTCTATGATTCTGATTATTGTATATACAACCAGAATTCTATTATAATCTATTTTGCTCTCTCATCAAATGAAATGCTGCAGTCTTGTGAATAAAGTTTAACTGTATGTGCAATA
>XM_026941385.2
TGTGAGTCAGGGAGGGTCTGCAGGAAGAGCGCCGACAGGTTTTGcgtctcctcttcctccctccttctcgTACGTCAATCCCTCCAtcatctctctcttcactgcacATCGCCCTGGAAGAAAACCTTTACAGAGTGAAAGCTGGAAAAGCAGCGGAATGGATTTTTAGCGcgcttgtctcatggatgtatGAGAGGAGGAATGGATTCCCTGCACCTGCTTCTGTCTCTTCTCGCTCTCCAAGTGAACCTCCTGGCCGCGGCCGAGGGCAGATTCGGTTGCCTATTTGAGGAGAATCTGTGTATGAACTATGAGATTTGTTTCAATGATGGCATGTTTGGCCATTGTCAGACAATGATGGGAGCGGATGTGTACACATACGATATCACACCAGCGACCCTGCAAAGATTTCGTACACTACTCTTGAAACTTTCACTTCGAGGCCTGTCATGGCAAGATGATGTCACTCAGCAGGTCCTGTCTAAAGAATTTTCTAAACTACACAGGATCCCCCTTTCACCACCTGACTCAAGACAAATGGTACAGACAGCTGCTGTGGAAGATGAAAGCCTGAAGCCATTGGAAGAGAAATTCAGCAAAAGTCTTCAGAAGTATTTGCTGAACCTGAGTCTGCTGTCTAAACTAGATGGTCAGGTCACCAAAACGAAGTCTTCTCTGCCATCAGCGTATTATCGTTCTGGAAAACCAAACATTAAACTCAGCTCGATCCCACCGGAGTTCACCCCAGATTCACCCTATCAGTCAGCTTCTTTCCCTGACCTTACTCGTTATCAGAGTGACACAGCGTATTACATGCAGCGACAGCAGGATGGTTCAAACTTCCCTCTTACTGCCCTAAAGCAGTATGTGTCTCAAAAAATGGCATCTGGGCAGAGAGGTAGACCAAAACCAGAACCAGTAGTCTCAAAGGGTGGATCCTCACAGTTGCCTGTCAAAGAACCCCTGACTCCAGTAGATGGAAGGCACAATGTAGATGTGGAGAGTTTGAGTGCAGCAGATCTGGACCAGCTGGCCTCTCTCATAGCTGATGCTCTTCAGGTAGTGGAGAAGCAAGCGGAAAAGGGATACAGACCCAGAGACCTGCAAACAGAAGACCTGCAAACTGAAGACCAGGAAACTGGAGaccaagaaactggagaactgcTGCCCAATGTTCAGCAGCCAGGAGCAGATTCATGGGATGAACATACCTCAGAGTCAGTAAGGCAAATAAGTGAAGAAATTTCACCAGTCAGTCAAATATTTGAGACCATGCCATCCATGTCAGGGGGACAAAACAGGAAGGAGGAGAGATCTAATGCAGACCATAAGGAAATAGAATTGTTGGGGAAGTTGCTAGAGTATCTGGATAAGACCTCCCCGTCAGAGCCGAGCCCGCCTGTAAAGGGGCAGGGCATATCCGTGGAGAGAGTACACAGCAGGACAACCCAGATGGATGTAAAAGTACAGAAGAAGGCCATGGaacaggtggaggaggtggagggcTGGGTGGAGGCTGCAGCTCTAGCACCCTCTTCTGTCCTAGAGATGGATATCACCCCGCACCGCCAAAATGTGAAAGTGCAAGATCTGCAACTTGATGTACAGACCAACAGTAACAATGATGTCTATGGCTACATCATTACAGATACTGATTCTCTTCCCACTGATCAGGGTTTGCACCTGATGGAGCTGTTGTGTCGCAAAGCAAAGATCCAGATGACTGATTTCCTTGAGCTTTCTGTTGTTGGTCCAGCCGTGACATTCCAGGTCCGCACTAATGATCAGAATATTACCACAGCTGCCATTGCCAATGTGGCTGttaGTCAGAAAGCTGCACTAGAGAAAGAGGCTGGAGTCACCATTTTGGAGGCAGGAGTTACCGATAAGACTAAGTTGAGTCAAATTCCTACAAGGTACAGCCACTCTGAATCTATGAAGTTCCTCATCCTTACGGTAATATCCATTGTGTGCATCATCGTGGTCCTGCTGATCTCTAGCATTATCTACTGTCTGCGCCATCGATCGCATCACAAACTCAAAGAGAAACTCACCAATCTCAGCACAGACCCAGCTACTGAAGCCACAGCTACCTACCAGGAGCTGTGTAGGCAGCGGATGGCTGTGAAGCCCCCAGTGGAAAGGGCGGAGCTTCGACAGTCCTCTCGCATAAACAGTGTGTCTTCTCAGCTGAGTGATGGACCAATTCTTAGCCCCTCTGCCCGCACGAGCACTTCCTCCTGGAGTGAAGAGCCTGCACACACGAACATGGACATCTCCACTGGTCATATGATACTGTCATATATGGAGGATCACCTGAAGAATAAGAACAGGTTGGAGAAGGAGTGGGAAGCTCTGTGTGCCTATCAGGCAGAACCGAACACCTGCAGTGTTGGCCAGAGAGACTCCAATGCCAAGAAGAACCGCACGACCACTATCATACCTTATGATCATTCTAGGATTTGCCTGAAAGTGGAGAACAGCCAAGGGAACTCTGAATACATCAATGCTAGTCCTATTATGGATCATGACCCCAGGAACCCAGCTTACATTGCCACTCAAGGTCCTCTGCCCTCGACTGTTTCTGACTTCTGGCAGatGGTGTGGGAAAGCGGGTGTGTGGTGATCGTCATGCTGACTCCTCTTACAGAAAGTGGAGTTAAACAGTGTTACCACTACTGGCCAGATGAGGGCTCTAACCTCTACCATATATACGAGGTTAACCTGGTGTCAGAACATGTGTGGTGTGAGGATTTCCTGGTTCGTAGCTTTTACttgaagaacatgcaaaccaATGAAAGTCGCACAGTCACCCAGTTCCATTACCACACCTGGCTCAACCAGCATACACCAGAGACCAGCCAGGCTCTGCTCGACTTCCGCAGaaaagtaaataaatgctaCAGAGGAAGGTCCTGCCCCATCATAGTTCACTGCAGtgatggAGCAGGGAGGACTGGGACATACATACTGATTGATATGGTTCTGAATAAGATGGCTAAAGGTGCTAAAGAGATTGATATTGCTGCTACACTGGAACACCTGAGAGATCAGAGACCTGGCATGGTTCAAACCAAggaGCAGTTTGAGTTTGCATTGACTGCAGTAGCAGAAGAGGTGAACGCTATCCTCAAATCCCTTCCTTAGTGAGAAATCAAGCAGCAAGAGAcatcccctctccctctccttcttgttttctttctcattctctgcCTCATTCTCTCTATCAGGATGGTGTATATAAAGTTTCATTAAAAgcttttcccccatttttttaTGTGTACTGGCCTCGCAGTGCAGACATTCTattgatataaaaaaagacGTTATATGTTTGGATATATTAATCATATAGCTTTAGGTTTTTCCTCCACATGTAaatgtgcatttcatttttggccacTCTTAAATCTCCGGTGGCTGGTGGCCCATGTTTAGTCATTGTCAAATGTAATACTGTGATAAGCTACCAATAGCTTGTTTCCAATGCTGAAAAGGACATTTAATACATCTGCATCTAAAATTATGCTACAATAACAAGAGTAACTGAAGTTGTTTATTGATATTACATAACATGCAGCTATGGAAAGTGCTCTTGAAGATGTACTCGGTAAAGGCCCAAACGCTGGTAAATGTACCTCTGTTTAAAGGAATAAATTCAGTATCAAGGTCTgcaaatacagttttatttcactttggtTGGTTTATGTACTGCCACTGAGAATGGTCTATATATGGTGCTGGTGCATGTATATAGGTGCAGCAGTGCTGCTCGGCCTTTGTGTCACTGCTTGGCTGAGAGTCcaccaaacaacaaaaaatccaGCTAAATGCAGACCTGTGATCTGAAGCTGATACTGATTGAGGACAGATTAACATAAGAGGCAGattaacataaataatatatggAAAATGATTAACTAGAATCTGAAACTGTGCACTCAAAAGGTGGACCAACATGGTAGGTGTGTAATAAAGTAAACAGTAATTGTACAGTGTTTGACTGTATACTTGGACCAGCCCTATACACACTAACATAACACTACCaagtcagtgtcactgctgtgctgagaacagtacaccacccaaataatatctggtgaGTGGTGGTGCTATGGTGGTGCCGAAAGATGGGTTGAGCGAAGCTTACAACGtgtgcatagcaacagataGCCTACAGTCAGTAGACATAAGTACACTTATAAGTAAGTGACCAATGTGTGTAGGAGCAAAGAGTGGATACTGAGTCTCTTTTTCTTACACTAGTTGGTCTAAGGTTTGGCTTGACATAATTAAATTGTATAATGTGCTGTGATGGTATATTGGGCAGACTGCAGAGGTTTGGCTAGTAAAAGATGTACTACCCTGTTCTGCTAATTACACCTCTTTTCTATGATTCTGATTATTGTATATACAACCAGAATTCTATTATAATCTATTTTGCTCTCTCATCAAATGAAATGCTGCAGTCTTGTGAATAAAGTTTAACTGTATGTGCAATA

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase N2-like isoform X3

GO: NA

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941384.2 True 4534 mRNA 0.45 23 8386513 8422245
XM_026941385.2 False 4502 mRNA 0.45 23 8386512 8422245

Neighbor

gene id symbol gene type direction distance location
esyt2a esyt2,LOC106599471 coding upstream 7046 8334824 ~ 8379466 (+)
dip2cb LOC108280427,LOC108428306,LOC107721715,LOC107663347,LOC107659260,LOC107749093 coding upstream 59003 8275578 ~ 8327509 (+)
myo10 myo10,LOC107602648,LOC107749189 coding upstream 128851 8193755 ~ 8257661 (+)
adcy8 adcy8,LOC107569488,LOC107557810,LOC107659784,LOC107663336 coding upstream 256030 8070565 ~ 8130482 (+)
oc90 NA coding upstream 412516 7957043 ~ 7973996 (+)
lactb2 lactb2 coding downstream 5574 8427819 ~ 8432247 (+)
slco5a1a LOC108280436,LOC108428320,LOC107721727,LOC107566986,LOC107690218,LOC107602641 coding downstream 15136 8437381 ~ 8462127 (+)
adhfe1 adhfe1 coding downstream 45137 8467382 ~ 8476972 (+)
LOC113543002 LOC108280206 coding downstream 81770 8504015 ~ 8505230 (+)
LOC113543000 LOC108428331 coding downstream 130002 8552247 ~ 8585499 (+)
G316756 NA non-coding upstream 9419 8376785 ~ 8377093 (+)
G316754 NA non-coding upstream 52981 8332424 ~ 8333531 (+)
G316752 NA non-coding upstream 54726 8331506 ~ 8331786 (+)
LOC113543009 NA non-coding upstream 124800 8259258 ~ 8261712 (+)
G316741 NA non-coding upstream 127442 8258829 ~ 8259070 (+)
G317008 NA non-coding downstream 165750 8587995 ~ 8588211 (+)
G317027 NA non-coding downstream 239041 8661286 ~ 8661776 (+)
G317031 NA non-coding downstream 267190 8689435 ~ 8691471 (+)
G317045 NA non-coding downstream 304096 8726341 ~ 8730818 (+)
G317113 NA non-coding downstream 371469 8793714 ~ 8793944 (+)
G316745 NA other upstream 117314 8268709 ~ 8269198 (+)
G316744 NA other upstream 122451 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 629551 7751694 ~ 7756961 (+)
G316413 NA other upstream 690593 7695534 ~ 7695919 (+)
crsp7 LOC108280732 other upstream 788348 7582313 ~ 7598164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 389350 8811595 ~ 8813410 (+)
G317390 NA other downstream 990078 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1536748 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 2114186 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 2141576 10563821 ~ 10568907 (+)

Expression


Co-expression Network