sall3a (sall3,LOC108435487)


Basic Information

Item Value
gene id sall3a
gene name sall3,LOC108435487
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3298344 ~ 3317951 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941397.2
TTATTGTTATTGCTATCTCTTTCCCTGCACCGGTCGTCCGCCGCCGATGCGCGTGCAAAAAGCGGGGCCGGGTGGCAGcgcatcatcttcatcatcaccatcatcttcatcatgtCCCGACGGAAACAGGCCAAGCCGCAGCATCTCAAATCGGACGAGGAGACTTCAGCGCTCGGGCTGGAATCGGAAAACGTCTCAGGTGAGATCCTGGATGATGCTGACAGCGGTAATGAGAGTCGTAGTGGTAGTGAGGAGACccatgtgtgtgagaaatgcTGCGCCGAGTTCTTCAAGTGGTCTGACTTCTGTGAACATCTGAAGAGCTGCACCAAGAACCCACTTGTGCTTATTATTAGTGAGAATGAGGTCACACCGGACCCGACACGGGAGTACCCAACTGAGCCCTCACCCGTGCCCAGCTGTCCGAGTGAGCCTGCAGACAGCGAGGAGGCAGCCGAGGGCCGGCACACCCCAGCCGAAGTGGATGATGGGGCTGAGATGACTTTGGAGCAAGTAACCACCCTAGACAAAGATGATGAGCCCATGGATGTGGAAATGTCTCCTGAGAAAACACTGGACCCTGAAGATCCAGATATATCACCAGAGCCTGATGTCAGCCTACCTCAGCTTGGCACAGCCCAACCCTCTGGGACAGGTTACAGCATGCCCAGCACAAATGTCACTTTGGAAACGCTGCATGGAACCCGAGTGGCTGTGGCACAGTTTGCCCAAAGCTTTCGTGGGGCAATAGCTAGTGGCGTGTCCACCATGGCCATCCCGATGATCCTAGACCAGCTGATGGCTTTACAGCAGCAGCAAATTCACCAGCTTCAGCTGATAGAACAGATCCGTAGCCAAGTGGCCCTAATGAACAGGCAGAACCCTGCACAGGCGGCTCTCAACCATCATACACACCACAATACAAATGGTGGCTCACAACCATCATCTGCCACTGGCCTTCCCACAATACCCAGTCAGCTCCAGCTACATGGATTCATTACGCCACCTGTCCACCAGCTCCCTATAAGGGTGCCACCCACTTTAAATGCCCAAGGCCCAACCTCATTGTCTTCTACCTTGGAAGGGGGTCACTCCCATGTCTCACAGACAGGTAGCCAGCTGTCCAGTTCTATAATGAACAGCAACACCTCAACAAATTCCTCATATCCACCATCTAGCTGTAGTGTAGTTCCTTCCTTGTTGCCACTTCAGAATTCAGTCactagcagcagcagcagcagcagcaacagcagcagcagcggagCTGGAACTGGTATCAGTAGCAGTGTTTCCCTCCCTAGAAACACCTCAAGTCCTCCAACACTGACCCATGGAAGCCTGCTGAGCTCCCCTTCCAACCTTCCCCTGATGCCTCCGAGTTCCTCAAGTAGTGTCATCTTCCCTAACCCACTGGCCAGTATTGCAGCCACAGCCAATGCACTTGATCCTCTCTCTGCCCTGATGAAGCACCGCAAAGGAAAACCTCCTAATGTCTCTGTATTTGACACAAAGCCTAGCTCAGAAGACCCCTTTTTCAAACATAAATGTAGGTTTTGTGCTAAGGTGTTTGGAAGTGACAGTGCCCTTCAAATACACCTTCGTTCACATACTGGTGAAAGGCCTTTCAAGTGCAACATTTGTGGTAATCGCTTCTCTACAAAAGGAAACTTGAAGGTCCACTTCCAGAGGCACAAAGAAAAGTACCCACACATTCCAATGAACCCCTATCCAGTGCCTGAGTACCTGGACAATGTGCCAACCAGCTCAGGCATTCCTTATGGCATGTCGCTGCCTCCAGAGAAGCCTGTTACCACATGGCTAGACAGCAAGCCTGTTTTGTCCACAGCCCCAACCTCAGTGGGGCTGCAGCTTCCCCCAACCCTGCCCAGTATGATAGGGGGGTATGGAGATTCGCCTAGTCTTACTCCCATCAGCAGGTCacctccaagaccatcaccacccTCAAGTGAGTGTGCATCTCTGTCACCCAATGTTCTCAGTACTGAAGTAAGCACAACCCTCACTTCGGCATCTCCACAGCCCACCATGGGGAGTGATGCACCCCCAGTTTTGAAGCCAGAGGGGATTCATTTGCCATCCAACTGTACCACCAGACCTGGAGAGACCAGCATGCCCTTGACTACTGTGAGCCAGATTGTGCTGTCATCCACAACCACTACCACAACCACTACCACCACCCAGATCACAGATCCAGTGACTCCTCCGACCTCTGGCTCGCATTCTGCCCTTCCAATGATCTCAGATCAATTCAAGGCCAAGTTTCCCTTTGGTGGCCTCCTGGACTCTATGCAAACATCAGAAACCTCAAAGCTGCAGCAGCTGGTGGAAAACATTGACAAAAAGATGACAGACCCCAACCAATGTGTCATCTGCCATCGTGTGCTCAGCTGTCAGAGTGCCCTCAAGATGCACTACCGTATCCACACTGGGGAAAGGccttttaaatgcaaaatatgtGGCCGTGCTTTCACTACTAAGGGCAACTTGAAAACGCACTTTGGGGTTCACAGGTCTAAGCCACCTCTAAGAGTGCAGCACTCATGTCCTATATGTCAGAAGAAGTTTACTAATGCTGTAGTGTTGCAACAGCATATCCGCATGCACATGGGAGGTCAGATTCCAAACACACCTCTTCCTGAGGGCTTTCAAGACATGGACACAGATTTTAACTTTGATGAGAAGAGTGTAGACAACATGAGCAATTATGATGATGAGCTGATTGATGAGATGGAACAGGCCATAGAGGATGAAGCAGATGTCAAAGATGGAGATGTGGACCCATCAAAACCAGCACATTCATATGGAGAGATGTCTCCTAGCAACTCTCCCCCAACTCCGGTCATCTCCAGCATTGCTGCTTTGGAAAACCAAATGAAGATGATTGACTCAACAGCAAATATGAACCGCGCCTTTAGCCTCAAGCCCTCTGAGAATGGAAGTGGGATTGGTGGAGAAAGTGGAGATGTGTTTAACAACGACTCATCCTCTGCCATGGGAGACTTAGAGAACCACAGTGTGGGGAGTCCAGCCCTGTCTGAGTCATCAGGCTCTATGCAGGCTCTTTCGCCTGCTCATAGTCAGCCTGAGAGCCATCGTTCCAGGTCTCCAGGTCTGGTCAATAACAACAGCAGTAATGCAGCCGAGGATATCCAGGACTCCAGTGCAGCTATAGCGACTGTGAAGTCAGAAAAGTCAGACACACCATCTCCAGGTTCTGTACCAGCTGAGCACACTGGTGTGCTAGACCTCACAGCTGCTCAGCCTGCCAGGCCTTATGTTAAAGAGGAGAACCAGTTCAGCATGCTGTTCTTAGGAAGAGATCGAGGTCTAACTGCTTCAAGCTTGATGAGCTCAGCACCAGGCCTCATCAAACTCGAGATGAACGGCCACAGCAAACCGCTGTCTTTGAGTGAGGGCTCCCACTTGCATATGGGCCTTCAGGTGCCTGCCGCAGCACCTCAGACAACAATGAGCCCCAGCCTCAACCCAATGCTGGCACCGCCTCCACCACGCCGGACCCCCAAGCAGCATAACTGCCAGTCCTGTGGGAAAAACTTCTCCTCAGCCAGCGCCCTGCAGATCCacgagcgcacacacacaggtgaaaaaCCCTTCGCCTGCTCCATCTGTGGGAGAGCATTCACCACGAAGGGCAATCTGAAGGTTCACATGGGAACCCATATGTGGAACAATGCCCCAGCCAGACGGGGGCGGCGTCTCTCAGTGGAAAACCCCATGGCCCTGCTGGGTGGTGATGCAATGAAATTCAGCGAGATGTTTCAGAAAGACCTGGCAGTTCGGGCAATGAATGTAGACCCAGGGTTTTGGAACCAGTATGCGGCGGCCATCACCAATGGACTGGCCATGAAGAACAATGAGATCTCCGTCATTCAGAACGGGGGCATTCCTCCGCTTCCTGTTAGCCTCGGAGGGGGAAGCATCCCTTCTCTGGCCAGCATGTCAGGGGGCATGGAGAGGGCACGCACAGGCAGCAGCCCTCCAATGACTGGCCTCGAGAAGACAAGCCTGGAGGTGGGAACTGTACGTCCCTTCTCCAGGTTCCTGGAGGACAACAAAGAGATCGGGATCAATTGATAAGCCGTCATTCAATGGGAAGACACAAACAGACTAAGTAAAGACTTCGAAGGTTCCTCCTTACCCAGTTTGGTCTCTTATGTACTATATTATGTACAGCTGAAGTTTGATATTCTGTTGGTTTTGGATCTATAGTATTCGGTATTGAGTAGAAGTATTTCCCATCCTCCTGTTTCGactatgaagaaaaaaaaacgttccATGTTTGAGAATTTGTCGTCTTGCAAGATTTGCATGGTACTTTTATTGGTTCTTATCAGTACATTTGACTGCTTTTAAGGATTATGTCACATAAAAGAAGAATATCTTTACTCAGTTGATCtctaaaaaggaaaaaaaatgaaatgaagagcAAACTCAGTGTGGATAGACTGACTAATGTTTACTTGgttacagtgtatgttttgaGGTACAAGACACGGGATTAGGTGAAACCGAAATACATTGTCGTAATGTGTGcttatttttttcactcatgAAGTAGATacttgatggaaaaaaaatgtttgaactATTTTAATCTTTGCATTTAGTCTCTTGGCATTGTCTTATATTAATGTCCGGTGTCTTTAGTATTTATAATATACACAAAAGCGGgtataagaaaatatatttaacagcCCCAACATTTTATTGATCTTTGTTTTCTAAACTTTAGACTTCTATTATGGCTGTCTCTTTCAATAAAGACAAAACGTCTCTTCATCTGGCCGATGCGGACACATTGCGAAGTTTTATTTGGAAATCTAGCACATGTCGGTGTAATGGACCTGGTACAAGATGAAAAAGCTAGGATATTGAAAAAGCTGCTGCCTTTACAGACTCGCTTTTAACCTTTGTAaagatgagagacagagatatacAGAAACTTATTGTgtataaagtaaaaacaaaattggTATGCATATTTTGtatcatgaaaaaaaaggatatcCTGATTTGAGATTTGTCATGTTTGTGAATGCACTTTTTAGAGGAACGGTCTTGTCTGTGACTTATCATTAATGATCTGACTGAACTATCTatctcattttgttttttttttgttttgttttgagttttttttttcttttttcgttTTGCCCGTGGGGTTCTTAAAACGTGAGTCATCGAGAAACTTCTGGAAAAAACGGGGGTGAAGGAGTGGGACAGATACGGCTCTGTACTGAAATCTTCACCCCTTCGCTCACATCAAATAATAAAATCGTGAGAAAGGA

Function

symbol description
sall3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within limb morphogenesis; negative regulation of smoothened signaling pathway; and olfactory bulb interneuron development. Predicted to be active in nucleus.

NR:

description
PREDICTED: sal-like protein 3

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941397.2 True 5333 mRNA 0.48 4 3298344 3317951

Neighbor

gene id symbol gene type direction distance location
nrn1b LOC108280273 coding upstream 215593 3080016 ~ 3082751 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding upstream 278881 3014486 ~ 3019463 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding upstream 313042 2975646 ~ 2985302 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding upstream 419629 2872529 ~ 2878715 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding upstream 427088 2860285 ~ 2871256 (+)
atg5 atg5,LOC107697282 coding downstream 184116 3502067 ~ 3523213 (+)
trnas-aga_13 NA coding downstream 307465 3625416 ~ 3625497 (+)
trnas-aga_14 NA coding downstream 308009 3625960 ~ 3626030 (+)
trnas-aga_16 NA coding downstream 310081 3628032 ~ 3628113 (+)
LOC113543357 NA coding downstream 324364 3642315 ~ 3646672 (+)
G313607 NA non-coding upstream 221974 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 353137 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 508848 2789242 ~ 2789496 (+)
LOC117599939 NA non-coding upstream 561756 2731215 ~ 2736588 (+)
G313853 NA non-coding downstream 206358 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 455119 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 489197 3807148 ~ 3808690 (+)
G313990 NA non-coding downstream 527906 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 570076 3888027 ~ 3895685 (+)
trnat-agu_12 NA other upstream 408956 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 622496 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 635945 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1112667 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 1153107 2133150 ~ 2145237 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 105616 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1274489 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1469897 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1583519 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1769888 5087839 ~ 5091273 (+)

Expression


Co-expression Network