LOC113543315 (LOC108280769,LOC108423999)


Basic Information

Item Value
gene id LOC113543315
gene name LOC108280769,LOC108423999
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4315743 ~ 4350544 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941423.2
GGTATCCTATGAGGAGTGCTTAGGGTTCTAGACTTCTAGaactctttttttctgagtgtactGCTTGTGTGAAGTCGGTGCGTCATTACGCACGCTCCAACCATTTACAGAGTCACTTCAATCCACTCAGGAGGTCGAGCTGAGAAAGTGGGGGTGGTGTGAGAAAATCACCAGCTCGTTTCAGACATCTGCATGGTTTAGATCGAGTTGCTCTGTGGTGTGAGAGCCTCGCTACACACTTGGTGGTTCTCTGGTTCTTCCAGTGCGGATGTGTGGCTGCGCGTCGCCGCGGCTTTGAGCTGAACCTCGGTTTCTCGCGGACAGGAGCCATGGCGCGCTGCGCGTTCTGGAGCGCGCTGTGtctcttcctcatgtcctccACTGGACTTTCTTTCGGTACCGGTTTCTACTCGTTCCCAGGACTCACACTGCAGCATGTGAGCTCAGAACAAAGCGTCGCTGGACCCCCGGCCGCAGGCATCAGCTCTCAGCGCAGgAACTGGTGCCAGTACACTGTATCGAAGACGGTTACATGCCAGGTGCATAACGGCACAGAGACGACGGTGCAGAGGGTGTTCCAGGGCTGTCGATGGCCAGGACACTGCTCCAAAGTCATCAGTTACAGGACTCTGATCAGGCCTGCATATAAGGTAGCCTATCGACAGGTGACTGCGCTCGAATGGAGGTGCTGTCCCGGCTTCCTGGGAAGTGACTGCAGTGTagAATGTATGAACTGTACGGGTTACACTGGTCTGAGCAATCGCCTGAACAGCCTTGAGAGTAAGATCAAGTTGTTACAGGAGGCTGGACCTCGTCCTCCATCTATCAATACTCTGCCAGAGAGATCAACAGACAACGAGGTAGAAACCCCAGAGCCCACCCCTAGGGGACCCCCACCTTTTTGGCAACCAGGGACAAGGGGCCCTCCAGGGCCAATAGGCCCACCTGGTATACCTGGTTCAGCGGGACCACCTGGACCTGCAGGAGAGACAGGTGCTCCAGGCCGACCGGGACCCACAGGCCCAAAGGGGGAAAGAGGCCTTCCAGGTGAAATTGGTCTTCCAGGTCCTCCAGGTCCTCCAGGACAGCCTGGCCTGCCTAACTCTATTCCTCTACGGGGCGATGTATTTCAGGGTCTCAGTCCAGATGAAACAGCAGGTCTTATAGGACCTCCAGGCCCACCAGGTCCTTCTGGCCCCCCAGGTCCTTCTGGAGCTCCTGGCATTCCGGGTTTACCTGGAGAAGATgCACCGAGGGGTCTCCCTGGCAAAGCTGGAGAACCAGGACTTAAAGGAGACCGAGGTGAAAGGGGACCTCCAGGATTAATCGGGGAGCAAGGCTTGGCAGGTCCAATGGGTGCCAAGGGGCAGAAAGGCGAGCCGGGAGAGAGCCTGCCTGACGGTGAAGGAGTTCAGCAGCTGAGAGAAGCTCTGAAGATCCTGGCTGAGCGAGTGCTCATTCTGGAGCACATGATTGGCATCCACGAGACCCCAGCAGAGGCCGGCTCTGGACTAGATGGCCTGTCAGATGCTCTTGGTCTACCACCAGCGAAGATAAAACGGGCCGAATCAGTGCGCCTTCGCTCTTCTTCTCTCCACACCGGCCAGCAAAAGAGGAGGAGTGTTTGACATTTACACTAGTGATTTTGTGTAGCTGTCATTCATTGCTCTTAATAATTATCTAGTGAAAGCCTGAGCAAACAGCACTATTAAGAACTTTTCATcatttataaggaaattgtttttgctgtacagttttcacaagaaaacATATGAATCCTTGTTTTTAATAAGACATGAaagtgtttttatgtgtgtatgtgtgtgtgtactctttGTAAGTTCTGATTTTTCTAGTTTATGGACTTTGCGCAACCTGTCATCTTGCTGTCTCTGCACTCGGCTCGTTTTTActcacacccagtaaacacacacttgtaGACAGGCCCACACTACACCTGGTGAAGGCTCGTCAGCGTCCTTCGGGCTTGTTCTCAGTTCTTGAGCTCGTTAAGGCTGTAGTGAGTCGGGAAGGAACAAATGAGCTTCCCGCCTGCTAGGCAGCTCCAAATAAAACATTGTCAAATGAGAAACATCTGGATCAGgctcaaaaaagaaaagaaaaaaacaaaacaccccAGCCACCTATTGTTTTGGTTCTGCAGTTCTGAAAACAGCTTGTTCGGATTTGGTAGGATGTTTTCTGTCAGCTAAATTGCAACCGTGGCTTTGATTCCCCATGGTCTTGGctttctctgtgcttcttttctgttttctcctgTATTATTTGTCTCGCCCTACTGTGCGAGTAAGTGTAACAAACATATCAGTTGGACTGCAGCTTTCCTTCTCTGCCATTGCAGACCATCTTTTCTCCCGAGTATGTTTACTGAGAGTACAGCTGGCTCTGTAGAAGGGAAATTAATAGGGTACTTACTCTAAGATAACGAAACATGTCTATGTGACTCGGTGCTCTGCTGTAATGGGATTGCCCTATTTATAAGCCATTTGTTTTCAAAAGCCGGTTTTCCCAGATAACATTTGTCTCACTCATTTACGCTCCATTAGCATTGAGACAAGATCACAGTGTATATTGACTTCCATGCATTAGGACCCCATTTCCAATCATTTATTTAACGACTTACTGTCATTTTAGCTTAGATGTTATATTTGAAGTATTGGTTTACTTTGACTGTAGCCTGTACGATTTTACCATAAGTTGACCTCTTTCTTACATTAGCAGCTGATTAGCGGTGGTACACTGCTggttcagtaaaaaaaaaaaaaaaaaaaaatgacttaacCAGGTTGCTCTCGTACAGTAGttaacagcagtgttaatgatatttaacaataaaatatgagGTGATTTAGTTTGATTTTGTACTGTATTGGAGACTGTATGGTGTCATGGCTGTTAGTATATTCTGCCTTGTATTCTGCcaatatttactatttttgcacTCTGATGTCAGGTTGATATGGCACTGACGTAGCAATAAAAACTGATCTGAAGGTTGTTGGTGGGGGTTCTTTTGTAAATTGGTGCacacaaaaaatgtaatgtcaTTTAATAAAAGATTCAATACACA
>XM_026941424.2
GGTATCCTATGAGGAGTGCTTAGGGTTCTAGACTTCTAGaactctttttttctgagtgtactGCTTGTGTGAAGTCGGTGCGTCATTACGCACGCTCCAACCATTTACAGAGTCACTTCAATCCACTCAGGAGGTCGAGCTGAGAAAGTGGGGGTGGTGTGAGAAAATCACCAGCTCGTTTCAGACATCTGCATGGTTTAGATCGAGTTGCTCTGTGGTGTGAGAGCCTCGCTACACACTTGGTGGTTCTCTGGTTCTTCCAGTGCGGATGTGTGGCTGCGCGTCGCCGCGGCTTTGAGCTGAACCTCGGTTTCTCGCGGACAGGAGCCATGGCGCGCTGCGCGTTCTGGAGCGCGCTGTGtctcttcctcatgtcctccACTGGACTTTCTTTCGGTACCGGTTTCTACTCGTTCCCAGGACTCACACTGCAGCATGTGAGCTCAGAACAAAGCGTCGCTGGACCCCCGGCCGCAGGCATCAGCTCTCAGCGCAGgAACTGGTGCCAGTACACTGTATCGAAGACGGTTACATGCCAGGTGCATAACGGCACAGAGACGACGGTGCAGAGGGTGTTCCAGGGCTGTCGATGGCCAGGACACTGCTCCAAAGTCATCAGTTACAGGACTCTGATCAGGCCTGCATATAAGGTAGCCTATCGACAGGTGACTGCGCTCGAATGGAGGTGCTGTCCCGGCTTCCTGGGAAGTGACTGCAGTGTagAATGTATGAACTGTACGGGTTACACTGGTCTGAGCAATCGCCTGAACAGCCTTGAGAGTAAGATCAAGTTGTTACAGGAGGCTGGACCTCGTCCTCCATCTATCAATACTCTGCCAGAGAGATCAACAGACAACGAGGTAGAAACCCCAGAGCCCACCCCTAGGGGACCCCCACCTTTTTGGCAACCAGGGACAAGGGGCCCTCCAGGGCCAATAGGCCCACCTGGTATACCTGGTTCAGCGGGACCACCTGGACCTGCAGGAGAGACAGGTGCTCCAGGCCGACCGGGACCCACAGGCCCAAAGGGGGAAAGAGGCCTTCCAGGTGAAATTGGTCTTCCAGGTCCTCCAGGTCCTCCAGGACAGCCTGGCCTGCCTAACTCTATTCCTCTACGGGGCGATGTATTTCAGGGTCTCAGTCCAGATGAAACAGGTCTTATAGGACCTCCAGGCCCACCAGGTCCTTCTGGCCCCCCAGGTCCTTCTGGAGCTCCTGGCATTCCGGGTTTACCTGGAGAAGATgCACCGAGGGGTCTCCCTGGCAAAGCTGGAGAACCAGGACTTAAAGGAGACCGAGGTGAAAGGGGACCTCCAGGATTAATCGGGGAGCAAGGCTTGGCAGGTCCAATGGGTGCCAAGGGGCAGAAAGGCGAGCCGGGAGAGAGCCTGCCTGACGGTGAAGGAGTTCAGCAGCTGAGAGAAGCTCTGAAGATCCTGGCTGAGCGAGTGCTCATTCTGGAGCACATGATTGGCATCCACGAGACCCCAGCAGAGGCCGGCTCTGGACTAGATGGCCTGTCAGATGCTCTTGGTCTACCACCAGCGAAGATAAAACGGGCCGAATCAGTGCGCCTTCGCTCTTCTTCTCTCCACACCGGCCAGCAAAAGAGGAGGAGTGTTTGACATTTACACTAGTGATTTTGTGTAGCTGTCATTCATTGCTCTTAATAATTATCTAGTGAAAGCCTGAGCAAACAGCACTATTAAGAACTTTTCATcatttataaggaaattgtttttgctgtacagttttcacaagaaaacATATGAATCCTTGTTTTTAATAAGACATGAaagtgtttttatgtgtgtatgtgtgtgtgtactctttGTAAGTTCTGATTTTTCTAGTTTATGGACTTTGCGCAACCTGTCATCTTGCTGTCTCTGCACTCGGCTCGTTTTTActcacacccagtaaacacacacttgtaGACAGGCCCACACTACACCTGGTGAAGGCTCGTCAGCGTCCTTCGGGCTTGTTCTCAGTTCTTGAGCTCGTTAAGGCTGTAGTGAGTCGGGAAGGAACAAATGAGCTTCCCGCCTGCTAGGCAGCTCCAAATAAAACATTGTCAAATGAGAAACATCTGGATCAGgctcaaaaaagaaaagaaaaaaacaaaacaccccAGCCACCTATTGTTTTGGTTCTGCAGTTCTGAAAACAGCTTGTTCGGATTTGGTAGGATGTTTTCTGTCAGCTAAATTGCAACCGTGGCTTTGATTCCCCATGGTCTTGGctttctctgtgcttcttttctgttttctcctgTATTATTTGTCTCGCCCTACTGTGCGAGTAAGTGTAACAAACATATCAGTTGGACTGCAGCTTTCCTTCTCTGCCATTGCAGACCATCTTTTCTCCCGAGTATGTTTACTGAGAGTACAGCTGGCTCTGTAGAAGGGAAATTAATAGGGTACTTACTCTAAGATAACGAAACATGTCTATGTGACTCGGTGCTCTGCTGTAATGGGATTGCCCTATTTATAAGCCATTTGTTTTCAAAAGCCGGTTTTCCCAGATAACATTTGTCTCACTCATTTACGCTCCATTAGCATTGAGACAAGATCACAGTGTATATTGACTTCCATGCATTAGGACCCCATTTCCAATCATTTATTTAACGACTTACTGTCATTTTAGCTTAGATGTTATATTTGAAGTATTGGTTTACTTTGACTGTAGCCTGTACGATTTTACCATAAGTTGACCTCTTTCTTACATTAGCAGCTGATTAGCGGTGGTACACTGCTggttcagtaaaaaaaaaaaaaaaaaaaaatgacttaacCAGGTTGCTCTCGTACAGTAGttaacagcagtgttaatgatatttaacaataaaatatgagGTGATTTAGTTTGATTTTGTACTGTATTGGAGACTGTATGGTGTCATGGCTGTTAGTATATTCTGCCTTGTATTCTGCcaatatttactatttttgcacTCTGATGTCAGGTTGATATGGCACTGACGTAGCAATAAAAACTGATCTGAAGGTTGTTGGTGGGGGTTCTTTTGTAAATTGGTGCacacaaaaaatgtaatgtcaTTTAATAAAAGATTCAATACACA
>XM_026941425.2
GTGGTATCCTATGAGGAGTGCTTAGGGTTCTAGACTTCTAGaactctttttttctgagtgtactGCTTGTGTGAAGTCGGTGCGTCATTACGCACGCTCCAACCATTTACAGAGTCACTTCAATCCACTCAGGAGGTCGAGCTGAGAAAGTGGGGGTGGTGTGAGAAAATCACCAGCTCGTTTCAGACATCTGCATGGTTTAGATCGAGTTGCTCTGTGGTGTGAGAGCCTCGCTACACACTTGGTGGTTCTCTGGTTCTTCCAGTGCGGATGTGTGGCTGCGCGTCGCCGCGGCTTTGAGCTGAACCTCGGTTTCTCGCGGACAGGAGCCATGGCGCGCTGCGCGTTCTGGAGCGCGCTGTGtctcttcctcatgtcctccACTGGACTTTCTTTCGGTACCGGTTTCTACTCGTTCCCAGGACTCACACTGCAGCATGTGAGCTCAGAACAAAGCGTCGCTGGACCCCCGGCCGCAGGCATCAGCTCTCAGCGCAGgAACTGGTGCCAGTACACTGTATCGAAGACGGTTACATGCCAGGTGCATAACGGCACAGAGACGACGGTGCAGAGGGTGTTCCAGGGCTGTCGATGGCCAGGACACTGCTCCAAAGTCATCAGGACTCTGATCAGGCCTGCATATAAGGTAGCCTATCGACAGGTGACTGCGCTCGAATGGAGGTGCTGTCCCGGCTTCCTGGGAAGTGACTGCAGTGTagAATGTATGAACTGTACGGGTTACACTGGTCTGAGCAATCGCCTGAACAGCCTTGAGAGTAAGATCAAGTTGTTACAGGAGGCTGGACCTCGTCCTCCATCTATCAATACTCTGCCAGAGAGATCAACAGACAACGAGGTAGAAACCCCAGAGCCCACCCCTAGGGGACCCCCACCTTTTTGGCAACCAGGGACAAGGGGCCCTCCAGGGCCAATAGGCCCACCTGGTATACCTGGTTCAGCGGGACCACCTGGACCTGCAGGAGAGACAGGTGCTCCAGGCCGACCGGGACCCACAGGCCCAAAGGGGGAAAGAGGCCTTCCAGGTGAAATTGGTCTTCCAGGTCCTCCAGGTCCTCCAGGACAGCCTGGCCTGCCTAACTCTATTCCTCTACGGGGCGATGTATTTCAGGGTCTCAGTCCAGATGAAACAGCAGGTCTTATAGGACCTCCAGGCCCACCAGGTCCTTCTGGCCCCCCAGGTCCTTCTGGAGCTCCTGGCATTCCGGGTTTACCTGGAGAAGATgCACCGAGGGGTCTCCCTGGCAAAGCTGGAGAACCAGGACTTAAAGGAGACCGAGGTGAAAGGGGACCTCCAGGATTAATCGGGGAGCAAGGCTTGGCAGGTCCAATGGGTGCCAAGGGGCAGAAAGGCGAGCCGGGAGAGAGCCTGCCTGACGGTGAAGGAGTTCAGCAGCTGAGAGAAGCTCTGAAGATCCTGGCTGAGCGAGTGCTCATTCTGGAGCACATGATTGGCATCCACGAGACCCCAGCAGAGGCCGGCTCTGGACTAGATGGCCTGTCAGATGCTCTTGGTCTACCACCAGCGAAGATAAAACGGGCCGAATCAGTGCGCCTTCGCTCTTCTTCTCTCCACACCGGCCAGCAAAAGAGGAGGAGTGTTTGACATTTACACTAGTGATTTTGTGTAGCTGTCATTCATTGCTCTTAATAATTATCTAGTGAAAGCCTGAGCAAACAGCACTATTAAGAACTTTTCATcatttataaggaaattgtttttgctgtacagttttcacaagaaaacATATGAATCCTTGTTTTTAATAAGACATGAaagtgtttttatgtgtgtatgtgtgtgtgtactctttGTAAGTTCTGATTTTTCTAGTTTATGGACTTTGCGCAACCTGTCATCTTGCTGTCTCTGCACTCGGCTCGTTTTTActcacacccagtaaacacacacttgtaGACAGGCCCACACTACACCTGGTGAAGGCTCGTCAGCGTCCTTCGGGCTTGTTCTCAGTTCTTGAGCTCGTTAAGGCTGTAGTGAGTCGGGAAGGAACAAATGAGCTTCCCGCCTGCTAGGCAGCTCCAAATAAAACATTGTCAAATGAGAAACATCTGGATCAGgctcaaaaaagaaaagaaaaaaacaaaacaccccAGCCACCTATTGTTTTGGTTCTGCAGTTCTGAAAACAGCTTGTTCGGATTTGGTAGGATGTTTTCTGTCAGCTAAATTGCAACCGTGGCTTTGATTCCCCATGGTCTTGGctttctctgtgcttcttttctgttttctcctgTATTATTTGTCTCGCCCTACTGTGCGAGTAAGTGTAACAAACATATCAGTTGGACTGCAGCTTTCCTTCTCTGCCATTGCAGACCATCTTTTCTCCCGAGTATGTTTACTGAGAGTACAGCTGGCTCTGTAGAAGGGAAATTAATAGGGTACTTACTCTAAGATAACGAAACATGTCTATGTGACTCGGTGCTCTGCTGTAATGGGATTGCCCTATTTATAAGCCATTTGTTTTCAAAAGCCGGTTTTCCCAGATAACATTTGTCTCACTCATTTACGCTCCATTAGCATTGAGACAAGATCACAGTGTATATTGACTTCCATGCATTAGGACCCCATTTCCAATCATTTATTTAACGACTTACTGTCATTTTAGCTTAGATGTTATATTTGAAGTATTGGTTTACTTTGACTGTAGCCTGTACGATTTTACCATAAGTTGACCTCTTTCTTACATTAGCAGCTGATTAGCGGTGGTACACTGCTggttcagtaaaaaaaaaaaaaaaaaaaaatgacttaacCAGGTTGCTCTCGTACAGTAGttaacagcagtgttaatgatatttaacaataaaatatgagGTGATTTAGTTTGATTTTGTACTGTATTGGAGACTGTATGGTGTCATGGCTGTTAGTATATTCTGCCTTGTATTCTGCcaatatttactatttttgcacTCTGATGTCAGGTTGATATGGCACTGACGTAGCAATAAAAACTGATCTGAAGGTTGTTGGTGGGGGTTCTTTTGTAAATTGGTGCacacaaaaaatgtaatgtcaTTTAATAAAAGATTCAATACACA

Function

GO: NA

KEGG:

id description
K24358 COL26A, EMID2; collagen type XXVI alpha (EMI domain-containing protein 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941423.2 True 3091 mRNA 0.48 14 4315745 4350544
XM_026941424.2 False 3088 mRNA 0.48 14 4315745 4350544
XM_026941425.2 False 3087 mRNA 0.48 14 4315743 4350544

Neighbor

gene id symbol gene type direction distance location
wdr53 wdr53 coding upstream 7691 4300799 ~ 4308052 (+)
LOC113543011 LOC108280892 coding upstream 25633 4283167 ~ 4290110 (+)
LOC113543038 LOC108280160,LOC108424050 coding upstream 38785 4267090 ~ 4276958 (+)
LOC113543045 LOC108280189 coding upstream 52457 4258365 ~ 4263286 (+)
p2ry12 LOC108280198 coding upstream 58909 4251870 ~ 4256834 (+)
cux1b cux1,LOC106581515,LOC105006988 coding downstream 26450 4376994 ~ 4533974 (+)
LOC113543006 sh2b2,LOC107573094 coding downstream 195591 4546135 ~ 4576648 (+)
bud23 wbscr22 coding downstream 232483 4583027 ~ 4590956 (+)
LOC113543019 zadh2 coding downstream 681705 5032249 ~ 5036445 (+)
rabgef1l LOC108280803 coding downstream 709486 5060030 ~ 5070433 (+)
G314364 NA non-coding upstream 20669 4294865 ~ 4295074 (+)
G314362 LOC108280893 non-coding upstream 22014 4290254 ~ 4293729 (+)
G314222 NA non-coding upstream 315429 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 420058 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 469648 3845857 ~ 3846095 (+)
G314402 NA non-coding downstream 29093 4379637 ~ 4384865 (+)
G314404 NA non-coding downstream 167057 4517601 ~ 4527820 (+)
G314609 NA non-coding downstream 429394 4779938 ~ 4780145 (+)
G314628 NA non-coding downstream 450108 4800652 ~ 4801103 (+)
G314636 NA non-coding downstream 495648 4846192 ~ 4846717 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 826376 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1426355 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1639895 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1653344 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 2130066 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 241896 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 437304 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 550926 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 737295 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 850477 5201021 ~ 5216591 (+)

Expression


Co-expression Network