nrn1b (LOC108280273)


Basic Information

Item Value
gene id nrn1b
gene name LOC108280273
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3080016 ~ 3082751 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941475.2
CTTTCTGCTTGTATAGGAGCTCTGAGTGGATGAAGCTCATTATTCTGATGCTTTCACACAGCATAAGATGGGATTTACTTTAACTGACAGACACGGCTTGCTTCTCTTTTTACTGCAGTTAGCGTCTTTGCTTCGAGCAGTGAGCTCTGCAGGGGCATGTGAGACCGTGTTTAAGGGTTTCTCAGACTGCTTGCTCAGCCTTGGAGAAAATATGGTGAACTATCCTCAGGACCTGGACGACCTGGAAAACCTGCACACTGTCTGCTCaTACTGGAGCGATTTTCTCTCGTGCACCTCTGCTGCAGTTGCAGATTGCCAAGACGAAGCAGTGGAGCTTTGGGAAAAACTCAAAGTGTCATCCGGGAGTCTGAACTACCAGGGAAGTCTGTTTCAACTGTGCTCTAAAGATAATGGAGCATCAGTACTGGGTTTTACACTGGAACTTACAGTTTGGGCCATGACTCTCTCCAGACTGGTGGTGTGGGTCATTTTTGAATGAAAACACCACCATGGTTAggaaagaaatgcaaaatagaTTGTAATATACtggatgatgtcattctttagcACTGTTAAACCTGAAACTCAAGCCATATATGTCCATATTGCTAtagcatttttgtaaaattgaattttaaataaaaacaaattattgtttttatttaaaaaatgcaaatctCATGTAATTGCAGAAAACTCTGGATTGGTGATATTTCATAAACATCAAGATGCTCAAGATGCTCATTGTATCTCTTTTGTGAAATGATTTTGATTAGAATTAGGACTAGGGctacacattaatacaaaaatcTCAGGAAGAATTTTGCATTTTAACCTACCTTTTTATATAAAACCTTTAAACAGCTTATACAAATGCGCTGAATTcttcaatctgattggttaaaaggtgttaattaattttctataagagcagctgcaaatcacacatttatattaatgcccccattctaatatgt

Function

NR:

description
PREDICTED: neuritin-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941475.2 True 977 mRNA 0.38 3 3080016 3082751

Neighbor

gene id symbol gene type direction distance location
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding upstream 60553 3014486 ~ 3019463 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding upstream 94714 2975646 ~ 2985302 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding upstream 201301 2872529 ~ 2878715 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding upstream 208760 2860285 ~ 2871256 (+)
plcd1b LOC108280636 coding upstream 245084 2808427 ~ 2834932 (+)
sall3a sall3,LOC108435487 coding downstream 215593 3298344 ~ 3317951 (+)
atg5 atg5,LOC107697282 coding downstream 419316 3502067 ~ 3523213 (+)
trnas-aga_13 NA coding downstream 542665 3625416 ~ 3625497 (+)
trnas-aga_14 NA coding downstream 543209 3625960 ~ 3626030 (+)
trnas-aga_16 NA coding downstream 545281 3628032 ~ 3628113 (+)
G313607 NA non-coding upstream 3646 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 134809 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 290520 2789242 ~ 2789496 (+)
LOC117599939 NA non-coding upstream 343428 2731215 ~ 2736588 (+)
G313465 NA non-coding upstream 344632 2735119 ~ 2735384 (+)
G313796 NA non-coding downstream 216347 3299098 ~ 3299306 (+)
G313853 NA non-coding downstream 441558 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 690319 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 724397 3807148 ~ 3808690 (+)
G313990 NA non-coding downstream 763106 3845857 ~ 3846095 (+)
trnat-agu_12 NA other upstream 190628 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 404168 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 417617 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 894339 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 934779 2133150 ~ 2145237 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 340816 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1509689 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1705097 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1818719 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 2005088 5087839 ~ 5091273 (+)

Expression


Co-expression Network