LOC113543373 (prss16)


Basic Information

Item Value
gene id LOC113543373
gene name prss16
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6971552 ~ 6982646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941503.2
ATGCCTCTATCCATGATTCAGTGGGGCGTGATGATCCTTGTCTTTGATTTTGCTTCCTCAGGGCGTGTGCTTTGGAAGTTGAAGGAACATGTGCATTCGGTCCATGAACAAAGAGCTGAACAGCGCTTGCTGATAACGCACAAATCTCATCTCATTGAGGATCAAATTCAGCAGAAACTTGACCATTTTAACGGAAGAAACACGGAAACCCTCCCTCAGAAATTCATTGTGAATGAAGCTTACTGGAAAAAGCCTGATGGTCCTGTGTTTCTCTACATTAGTGGTGAAGGCCCTCTGACAAAATTCAGCGTGTTGGCTGGTCACCATGTGGCCATGGCGGAGAAGAATGGAGCACTGCTGGTGGCACTCGAACACCGTTTCTACGGTTCGAGCATCAATCCAGGCGGCCTGGAGCTTTTGAATCTGCAGCACCTTTCCAGTCAGCAGGCCCTTGCAGATCTGGCTGCTTTCCACAGCTTTATCAGTCAGAAATATGGCCTTACTGACAAGAACATCTGGATCAGTTTCGGGGGCTCATATGCTGGCGCTCTCTCCGCCTGGTTCAGGGGCAAGTTTCCTCACCTCGTCTATGCGGCTGTGGCATCCTCGGCCCCTGTTCAGGCCAAACTGGATTTTTCTGCTTATAACAAGGTGGTGGGACATAGTCTTACAGAGGAGAGTGTAGGCGGCTCTTATAAGTGTTTAAATAGTGTTCGGAAGGCCTTTGCGGCCCTGGAAGCAGCTCTGCTTGGGGGGAAAGAGATGAAGGTGGTGAAGGATTTTGGGTGCTGTGATGTGCCTAAGAGCCCAGAGGACCGCGCTGAGCTCGTGCAGAGCGTGGCTGACATCTTCATGGGAAGTGTGCAGTACAATGAGGAAGGAGTGATGCTGACCATCGCTCAAATCTGTGACATCATGACCAATCAGAGCCAAGAAGAGGCCTATGACAGGCTGGTCGAACTCGCAGCGATGTATCGTGCTACAGCAAAGGAGCCATGTCTGGATATCTCTCACCAACACACCATCCTGAACCTGAACAAAAGCACCAATGGTAGCTTCGGGTACAGACAGTGGTACTACCAGACCTGCACTGAGTTCGGCTTCTATCAGACCTGTGACGATGCTAGCTGCCCATTCGTGCGCACGCTGACTCTGCAGGACCAAATTCAGCTCTGCTCCCAGCTGTTTGAGATTCCTCAACACACACTCCCCATGAACATCGCCTTCACCAACCAGTACTACGGAGGAGATCAGGCCCAAACCCAGCGTGTGCTCTATATCAATGGTGACATTGACCCTTGGATGGAGTTAAGTATTGTGCATAATGGGACTGGAGTGGATAAGGACAGAGCCATCGTGATTCACGGCACTGCTCACTGCGCGGATATGAACCCTACACGCTCCAGGGACAAGCCCTCACTGCGCCAGGCCaggaagGAAATTGAAAGGCATGTTGTCATGTGGCTGAAGAGTGCAGCACGGGAGCACAcgctctgaccaatcagcatgcTTGCAAGTTGATCACCTGACTGAACCACTTTGCTCTGCCATGACCCTTCTCTTATGCCTTCTGTCAAATTATCTTATCAGGCTGCatgtgtgatgtgagtgtgtgtatgactgtgtgaCTATGTGCTGGGATAGAAAGTTACTAAATGTGTGTAGTTTGTATGTCTGTCAGTTGGCATTACTGAGAAAGAACCttcaagctgtgtttttctggtttgtgtgtggtgtgtgtgtgtgtgtggtgtgtgtgtgtgtttttatacaaTCAAAAGACATTTTATGCTATTAATATTAGTTCTTGAGTAATATtaccattaacattatatatGAAGTCACAGTGAACAGTATAACATGCATAAAGAATTTCACAAGAAATTCTGTCTCATGATTTTTGA

Function

symbol description
prss16 Predicted to enable dipeptidyl-peptidase activity. Predicted to be involved in proteolysis. Orthologous to human PRSS16 (serine protease 16).

GO: NA

KEGG:

id description
K09649 PRSS16; thymus-specific serine protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941503.2 True 1904 mRNA 0.48 12 6971552 6982646

Neighbor

gene id symbol gene type direction distance location
ech1 ech1,LOC107598793,LOC107677099 coding upstream 1604 6961943 ~ 6969948 (+)
hnrnpl2 hnrnpl,LOC107730992 coding upstream 12663 6945526 ~ 6958889 (+)
LOC113543204 gbas,LOC108413275,LOC102196085,LOC100692767,LOC102291788,LOC102797551 coding upstream 67470 6896246 ~ 6904082 (+)
LOC113543083 axl,LOC107572376,LOC107663740 coding upstream 501441 6434266 ~ 6470111 (+)
LOC113543080 cdkl1,LOC108424097,LOC107551271,LOC107680089,LOC105890602,LOC107598661 coding upstream 572267 6384010 ~ 6399285 (+)
meis3 meis3,LOC107677073,LOC107598789,LOC107741525,LOC107726131 coding downstream 14838 6997484 ~ 7008738 (+)
atm atm,LOC106522150 coding downstream 162755 7145401 ~ 7203200 (+)
dscamb dscamb,dscam,LOC108280204,LOC108413375,LOC107562808,LOC107726116,LOC107561601,LOC106612992 coding downstream 276626 7259272 ~ 7394464 (+)
LOC113543091 NA coding downstream 459458 7442104 ~ 7453708 (+)
brwd1 brwd1,LOC108280674,LOC108410482,LOC107677081,LOC107567576,LOC107730991,LOC107655817,LOC107747676 coding downstream 483987 7466633 ~ 7490001 (+)
G315901 NA non-coding upstream 36375 6934949 ~ 6935177 (+)
G315894 NA non-coding upstream 56011 6914261 ~ 6915541 (+)
G315886 NA non-coding upstream 76935 6894337 ~ 6894617 (+)
G315862 NA non-coding upstream 244864 6726474 ~ 6726688 (+)
G315811 NA non-coding upstream 317489 6646145 ~ 6654063 (+)
G315968 NA non-coding downstream 50919 7033565 ~ 7033806 (+)
G316000 NA non-coding downstream 145045 7127691 ~ 7129877 (+)
G316288 NA non-coding downstream 443815 7426461 ~ 7433424 (+)
G316317 NA non-coding downstream 522433 7505079 ~ 7505404 (+)
G316339 NA non-coding downstream 582440 7565086 ~ 7568068 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 26562 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 744312 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1069986 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 1600655 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 1751934 5219545 ~ 5219618 (+)
G316001 NA other downstream 150813 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 599667 7582313 ~ 7598164 (+)
G316413 NA other downstream 712888 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 769048 7751694 ~ 7756961 (+)
G316744 NA other downstream 1280693 8263339 ~ 8264061 (+)

Expression


Co-expression Network