slc44a5a (slc44a5,slc44a5a,LOC108280730)


Basic Information

Item Value
gene id slc44a5a
gene name slc44a5,slc44a5a,LOC108280730
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18816009 ~ 18871360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946110.2
caGCCCGGAGTCGGAGTCTGACGTTCATTTTATTCAGTGAGGATTAAATCTCTTTAAACCCGACGCTCATCCGTGCGctcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtcgTTATGTAGAGCTGTGAGCGCGCGCGGAGATGGCGAAACACAGCCCGGTTCCCTCCGCTTTTTACGGCGAGCCACGGAAGTTTGACCCGACATTCAGGGGGCCCGTCCATAACAGAAGCTGCACGgatgtgctgtgctgtgtgctCTTCGTCATCGTCATCCTCGGCTACGTCGCGCTCGGCACTGTGGCTTGGATACATGGAGACCCCAGGAAAGTGATCCATCCTACTGACAGCTCAGGAGACTTCTGTGGACAAAAAGGCACAGCCAATGCtAAGAAACCCATCCTGTTCTACTTCAACATCCTGAAATGTGCAAATCCTGCTGTTCTGATAAACCTGCAGTGTCCTACCACTCAGATGTGTGTTTCGACGTGCCCGGACCGCTTCGCCACCTACACCGACGTGCAGCTCCAACACCCCTTCAACAGGAGCCACTGGGAATATTACAGACAGTTCTGCAGGCCGGGATTCAACAATCCTAAGAAGcCTGTGGCTCATGTCCTGCGTGATGAAGACTGTCCGTCAGTGATTGTGCCCAGCCGACCATTTTTCCAGCGATGCCTTCCAGACTTTATCATGAGGAATGGCACGCTGACAGTCGCTAACAGAACGGCTTTTAAGGACGCACTGGATACGGCGAGGAGTGTGAGGGAACTCAGAGATGCAGCtgaTGGTATAACGGGTCTGCTGGAGGCCAAGCAGCTCGGCATGAAGATCGTGGAAGACTACGCCAACTCCTGGGCCTGGATTCTAATagggtTAATTCTAGCACTGGTCATCAGTCTGATCTTCATCCTGCTCCTGCGCTTCACTGCTGGCCTCCTGCTCTGGTTCACCATCATCGCCGTCATCCTACTCATAGCCTacgGAATCTGCCGTTGTTACTGGGAGTTCACGCTTTTGAGAGAGACTCCCGAAGCAGACGTCAGCATCACAGACATCGGAGTCCAGACGAACCTACACGTCTACCTGCAGCTCAGCCAGACGTGGCTCATCTTCTtGGTGTCTCTGGTTTTAACTGAAGCATCCGTAGTTTTAATGCTGGTCTTCCTGAGGAAGAGAGTGTGCATCGCCATCGCCCTGCTCAAAGAGGGCAGCaagGCCATCAGCTACATCATGTCTGCTTTATTCTACCCAATCGTCACCTTCGTGATGCTGGCTGTGTGTATCTCTTACTGGGCCGTTACAGCTGTTTTTCTGGCATCGTCTGGTGAAGCTGTGTACAAAGTCATGTCAGCGCAGCCCAACTGCAAGCACGCCAACCTCACCTGCAGTCCAGAAACGTTTAACAGGACCAACATCACTAAGCagtgtccaggagctcagtgtcTCTTCGCGTTCTACGGCGGAGAGAGCGTGTATCACCGCTACATCTTCCTCCTGCAGCTGTGCAATCTGCTCGTCTTCCTCTGGTTGGTTAATTTCACCATCGCGCTGGGGCAGTGTACACTCGCCGGAGCCTTCGCATCCTACTACTGGGCCAAGAGGAAACCTGATGATATCCCATCATGCCCtgttttctcctcctttttccGGGCTGTACGGTATCACACCGGGTCTCTTGCTTTCGGCTCACTGATCTTAGCTTTCGTCCAGTTCATCCGAATAGTACTTGAATATCTGGACCATAAGCTTAAAGgagCTCATAACGCGTTTGCTCGCTTCCTGCTCTGCTGTTTAAAATGCTGCTTTTGGTGCCTGGAGCGTTTTATTCGCTTCATGAACAGGAACGCATACATCATGATTGCAATCTATGGAAAGAGTTTCTGCACGTCAGCTCGGGAAGCCTTCTTTTTGTTAATGAGGAACGTTGTGAGGGTAGCAGTGTTGGACAAGCTTACAGACTTCCTGCTCTTCTTAGGGAAAATTCTCATAACGGGGAGTGTTGgTGTTATTgccttctttttcttcacacacaAGATCCCCATCATTCAGGAAGAAGTTCTAGTTCTGAATAATTACTGGGTGCCTCTCCTGACAGTCGTGTTCGGGTCGTACCTGATCGCACACGGCTTCTTCAGCGTCTATGCAATGTGTGTGGACACACTGTTCCTGTGTTTCTGTGAGGACCTGGAGAGGAACGACGGCACGCCGACGAAACCTTTCCTCATGTCTCCCGGTTTGCGCAGAATTCTGGGAAGCGTGGATCAGAGCCCCGGGAAATCACGAGCAGCACTGCATCAGTGCGCCGTCAGAGAATAGCTTTACTCCTCCTGCTAGCTAGCATGCTTTAACTCTTTAACTCTCCTCCTGCGGCTGTGAGGACGCCGGCCGCTACGTCCTGTACTGTAACCCGTCTCCGATGCACTAAGACTGTGACAAACACTGAGCATTTACTTCCACTAGAGGAGACTGAAGGTgctatgcactaacacacacacacacacacacacacacactcacacacacacaggttctgtCCAACTTTCTATCTGCCTTATTCTCACACGTACAGCCGTTTACAGGATTTTTTGCGACATCCAGATTGACCCGAGGTCTGATCGCTTATTCAGAGGTAgaactgatgttttttttgtgattggaataaaaaaggacattttta
>XM_034314552.1
ACTGACAGCTCAGGAGACTTCTGTGGACAAAAAGGCACAGCCAATGCAAACCCATCCTGTTCTACTTCAACATCCTGAAATGTGCAAATCCTGCTGTTCTGATAAACCTGCAGTGTCCTACCACTCAGATGTGTGTTTCGACGTGCCCGGACCGCTTCGCCACCTACACCGACGTGCAGCTCCAACACCCCTTCAACAGGAGCCACTGGGAATATTACAGACAGTTCTGCAGGCCGGGATTCAACAATCCTAAGAAGcCTGTGGCTCATGTCCTGCGTGATGAAGACTGTCCGTCAGTGATTGTGCCCAGCCGACCATTTTTCCAGCGATGCCTTCCAGACTTTATCATGAGGAATGGCACGCTGACAGTCGCTAACAGAACGGCTTTTAAGGACGCACTGGATACGGCGAGGAGTGTGAGGGAACTCAGAGATGCAGCtgaTGGTATAACGGGTCTGCTGGAGGCCAAGCAGCTCGGCATGAAGATCGTGGAAGACTACGCCAACTCCTGGGCCTGGATTCTAATagggtTAATTCTAGCACTGGTCATCAGTCTGATCTTCATCCTGCTCCTGCGCTTCACTGCTGGCCTCCTGCTCTGGTTCACCATCATCGCCGTCATCCTACTCATAGCCTacgGAATCTGCCGTTGTTACTGGGAGTTCACGCTTTTGAGAGAGACTCCCGAAGCAGACGTCAGCATCACAGACATCGGAGTCCAGACGAACCTACACGTCTACCTGCAGCTCAGCCAGACGTGGCTCATCTTCTtGGTGTCTCTGGTTTTAACTGAAGCATCCGTAGTTTTAATGCTGGTCTTCCTGAGGAAGAGAGTGTGCATCGCCATCGCCCTGCTCAAAGAGGGCAGCaagGCCATCAGCTACATCATGTCTGCTTTATTCTACCCAATCGTCACCTTCGTGATGCTGGCTGTGTGTATCTCTTACTGGGCCGTTACAGCTGTTTTTCTGGCATCGTCTGGTGAAGCTGTGTACAAAGTCATGTCAGCGCAGCCCAACTGCAAGCACGCCAACCTCACCTGCAGTCCAGAAACGTTTAACAGGACCAACATCACTAAGCagtgtccaggagctcagtgtcTCTTCGCGTTCTACGGCGGAGAGAGCGTGTATCACCGCTACATCTTCCTCCTGCAGCTGTGCAATCTGCTCGTCTTCCTCTGGTTGGTTAATTTCACCATCGCGCTGGGGCAGTGTACACTCGCCGGAGCCTTCGCATCCTACTACTGGGCCAAGAGGAAACCTGATGATATCCCATCATGCCCtgttttctcctcctttttccGGGCTGTACGGTATCACACCGGGTCTCTTGCTTTCGGCTCACTGATCTTAGCTTTCGTCCAGTTCATCCGAATAGTACTTGAATATCTGGACCATAAGCTTAAAGgagCTCATAACGCGTTTGCTCGCTTCCTGCTCTGCTGTTTAAAATGCTGCTTTTGGTGCCTGGAGCGTTTTATTCGCTTCATGAACAGGAACGCATACATCATGATTGCAATCTATGGAAAGAGTTTCTGCACGTCAGCTCGGGAAGCCTTCTTTTTGTTAATGAGGAACGTTGTGAGGGTAGCAGTGTTGGACAAGCTTACAGACTTCCTGCTCTTCTTAGGGAAAATTCTCATAACGGGGAGTGTTGgTGTTATTgccttctttttcttcacacacaAGATCCCCATCATTCAGGAAGAAGTTCTAGTTCTGAATAATTACTGGGTGCCTCTCCTGACAGTCGTGTTCGGGTCGTACCTGATCGCACACGGCTTCTTCAGCGTCTATGCAATGTGTGTGGACACACTGTTCCTGTGTTTCTGTGAGGACCTGGAGAGGAACGACGGCACGCCGACGAAACCTTTCCTCATGTCTCCCGGTTTGCGCAGAATTCTGGGAAGCGTGGATCAGAGCCCCGGGAAATCACGAGCAGCACTGCATCAGTGCGCCGTCAGAGAATAGCTTTACTCCTCCTGCTAGCTAGCATGCTTTAACTCTTTAACTCTCCTCCTGCGGCTGTGAGGACGCCGGCCGCTACGTCCTGTACTGTAACCCGTCTCCGATGCACTAAGACTGTGACAAACACTGAGCATTTACTTCCACTAGAGGAGACTGAAGGTgctatgcactaacacacacacacacacacacacacacactcacacacacacaggttctgtCCAACTTTCTATCTGCCTTATTCTCACACGTACAGCCGTTTACAGGATTTTTTGCGACATCCAGATTGACCCGAGGTCTGATCGCTTATTCAGAGGTAgaactgatgttttttttgtgattggaataaaaaaggacattttta
>XR_004580282.1
caGCCCGGAGTCGGAGTCTGACGTTCATTTTATTCAGTGAGGATTAAATCTCTTTAAACCCGACGCTCATCCGTGCGctcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtcgTTATGTAGAGCTGTGAGCGCGCGCGGAGATGGCGAAACACAGCCCGGTTCCCTCCGCTTTTTACGGCGAGCCACGGAAGTTTGACCCGACATTCAGGGGGCCCGTCCATAACAGAAGCTGCACGgatgtgctgtgctgtgtgctCTTCGTCATCGTCATCCTCGGCTACGTCGCGCTCGGCACTGTGGCTTGGATACATGGAGACCCCAGGAAAGTGATCCATCCTACTGACAGCTCAGGAGACTTCTGTGGACAAAAAGGCACAGCCAATGCtAAGAAACCCATCCTGTTCTACTTCAACATCCTGAAATGTGCAAATCCTGCTGTTCTGATAAACCTGCAGTGTCCTACCACTCAGATGTGTGTTTCGACGTGCCCGGACCGCTTCGCCACCTACACCGACGTGCAGCTCCAACACCCCTTCAACAGGAGCCACTGGGAATATTACAGACAGTTCTGCAGGCCGGGATTCAACAATCCTAAGAAGcCTGTGGCTCATGTCCTGCGTGATGAAGACTGTCCGTCAGTGATTGTGCCCAGCCGACCATTTTTCCAGCGATGCCTTCCAGACTTTATCATGAGGAATGGCACGCTGACAGTCGCTAACAGAACGGCTTTTAAGGACGCACTGGATACGGCGAGGAGTGTGAGGGAACTCAGAGATGCAGCtgaTGGTATAACGGGTCTGCTGGAGGCCAAGCAGCTCGGCATGAAGATCGTGGAAGACTACGCCAACTCCTGGGCCTGGATTCTAATagggtTAATTCTAGCACTGGTCATCAGTCTGATCTTCATCCTGCTCCTGCGCTTCACTGCTGGCCTCCTGCTCTGGTTCACCATCATCGCCGTCATCCTACTCATAGCCTacgGAATCTGCCGTTGTTACTGGGAGTTCACGCTTTTGAGAGAGACTCCCGAAGCAGACGTCAGCATCACAGACATCGGAGTCCAGACGAACCTACACGTCTACCTGCAGCTCAGCCAGACGTGGCTCATCTTCTtGGTGTCTCTGGTTTTAACTGAAGCATCCGTAGTTTTAATGCTGGTCTTCCTGAGGAAGAGAGTGTGCATCGCCATCGCCCTGCTCAAAGAGGGCAGCaagGCCATCAGCTACATCATGTCTGCTTTATTCTACCCAATCGTCACCTTCGTGATGCTGGCTGTGTGTATCTCTTACTGGGCCGTTACAGCTGTTTTTCTGGCATCGTCTGGTGAAGCTGTGTACAAAGTCATGTCAGCGCAGCCCAACTGCAAGCACGCCAACCTCACCTGCAGTCCAGAAACGTTTAACAGGACCAACATCACTAAGCagtgtccaggagctcagtgtcTCTTCGCGTTCTACGGCGGAGAGAGCGTGTATCACCGCTACATCTTCCTCCTGCAGCTGTGCAATCTGCTCGTCTTCCTCTGGTTGGTTAATTTCACCATCGCGCTGGGGCAGTGTACACTCGCCGGAGCCTTCGCATCCTACTACTGGGCCAAGAGGAAACCTGATGATATCCCATCATGCCCtgttttctcctcctttttccGGGCTGTACGGTATCACACCGGGTCTCTTGCTTTCGGCTCACTGATCTTAGCTTTCGTCCAGTTCATCCGAATAGTACTTGAATATCTGGACCATAAGCTTAAAGgagCTCATAACGCGTTTGCTCGCTTCCTGCTCTGCTGTTTAAAATGCTGCTTTTGGTGCCTGGAGCGTTTTATTCGCTTCATGAACAGGAACGCATACATCATGATTGCAATCTATGGAAAGAGTTTCTGCACGTCAGCTCGGGAAGCCTTCTTTTTGTTAATGAGGAACGTTGTGAGGGTAGCAGTGTTGGACAAGCTTACAGACTTCCTGCTCTTCTTAGGGAAAATTCTCATAACGGGGAGTGTTGgTGTTATTgccttctttttcttcacacacaAGATCCCCATCATTCAGGAAGAAGTTCTAGTTCTGAATAATTACTGGGTGCCTCTCCTGACAGTCGTGTTCGGGTCGTACCTGATCGCACACGGCTTCTTCAGCGTCTATGCAATGTGTGTGGACACACTGTTCCTGTGTTTCTGTGAGGACCTGGAGAGGAACGACGGCACGCCGACGAAACCTTTCCTCATGTCTCCCGGTTTGCGCAGAATTCTGGGAAGCGTGGATCAGAGCCCCGGGAAATCACGAGCAGCACTGCATCAGTGCGCCGTCAGAGAATAGCTTTACTCCTCCTGCTAGCTAGCATGCTTTAACTCTTTAACTCTCCTCCTGCGGCTGTGAGGACGCCGGCCGCTACGTCCTGTACTGTAACCCGTCTCCGATGCACTAAGACTGTGACAAACACTGAGCATTTACTTCCACTAGAGGAGACTGAAGATTCAGAAGCACAGCTGATGCATGTAggaaacatcctgtttctctagAAACCTTGTGTACCATGCTGCAGGTCAACtacatgtacactcactggccactttaataggaaggaacacctgtacacctgctcattcatgcagttattcaatcagccaatcgtattacagcagcacagtgcacaAAATCAGCAGTTACTGGACAAGAGCTtgagttcatgttcacatcaacatcagaatggagaaattATCTCAGTGATATCAGTGACTCTGACTGTGGCAGGGATGTTGGTGCCaggttgagtatttcagaaagtgctgatctgCCATTTCCACGCACAACAGTAACCTCTAGAGTGAAACTCAGtgtggtgcgaaaaacaaaaaaacatcctgtaacTGGCAGTTCTGTGCATGGAAAAACGAAAGAAAAAAGACGTCTTTTTATGAGATCGGTCAGAGATGAACAGTcggactggttcgagctgacggAGAGACTTCGGTAACtcacataaccactctttacaaccgtggtgagcagaaaagcatcacagacaGCACAACAAATCGAACCGTCAGAAGGATGGGCTGAAACAGCAAC

Function

symbol description
slc44a5a Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC44A5 (solute carrier family 44 member 5).
slc44a5 Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in plasma membrane. Predicted to be active in membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946110.2 False 2688 mRNA 0.51 22 18816009 18866798
XM_034314552.1 False 2334 mRNA 0.50 19 18854562 18866798
XR_004580282.1 True 3080 misc_RNA 0.50 23 18816009 18871360

Neighbor

gene id symbol gene type direction distance location
sdr16c5a LOC108280727 coding upstream 5799 18799203 ~ 18810210 (+)
penka LOC108280728 coding upstream 18148 18791345 ~ 18797861 (+)
bpnt2 impad1 coding upstream 52521 18756729 ~ 18763488 (+)
mffb LOC108280720 coding upstream 61949 18747527 ~ 18754060 (+)
LOC113546386 LOC108280704 coding upstream 99457 18692192 ~ 18716552 (+)
cryz cryz coding downstream 47707 18919067 ~ 18925573 (+)
fam151a fam151a coding downstream 59699 18931059 ~ 18936790 (+)
cdcp2 cdcp2 coding downstream 124197 18995557 ~ 19002207 (+)
cdc7 cdc7,LOC102782901 coding downstream 135167 19006527 ~ 19014193 (+)
rpap2 rpap2 coding downstream 156521 19027881 ~ 19042630 (+)
G322747 NA non-coding upstream 1192 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 3161 18812503 ~ 18812848 (+)
G322744 NA non-coding upstream 3674 18811105 ~ 18812335 (+)
G322738 NA non-coding upstream 50407 18765192 ~ 18765602 (+)
G322696 NA non-coding upstream 95570 18715395 ~ 18720439 (+)
G322802 NA non-coding downstream 87723 18959083 ~ 18959319 (+)
G322817 mrpl37 non-coding downstream 122398 18993758 ~ 18994623 (+)
G322957 NA non-coding downstream 236026 19107386 ~ 19109334 (+)
G323104 NA non-coding downstream 562870 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 641364 19512724 ~ 19523033 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 385987 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 588776 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1149796 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1179400 17570649 ~ 17636609 (+)
fuz fuz other upstream 1332332 17478834 ~ 17483677 (+)
ssbp3a ssbp3,ssbp3a other downstream 73338 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 333298 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 442500 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1257893 20129253 ~ 20281067 (+)
G323534 NA other downstream 1567342 20438702 ~ 20440561 (+)

Expression


Co-expression Network