ahrrb (LOC108280895)


Basic Information

Item Value
gene id ahrrb
gene name LOC108280895
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17323911 ~ 17347484 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946118.2
CCAAGCTCGAGCCTGAAACACAAGGATGTAACCGCCACCCTGAGCCGGGTATATAAAGCCCTCAGACACATCTGTCCGGAGAAccgctctctgtctctttatagACACCTCTCAGATGTTAGCGGTTTTTTTCAGTCTTGTTTGTCTCAAATAAAAGTCTCAACCGATAGGCTATATTGTCCATACGCGAAAGGAAAACAGCTTGGATTTACCTGAGAGGTTTGCTGTTATCATTTGtttatagtgtttatagcgACTGGCCAAACATCATGATTCCACCTGGAGACTGTCTGTATGctgggaggaagaggagaaagcCCATTCAAAAGCAAAAACCAGCAGGAGTGAACCAGAAGTCGAACCCGTCTAAGAGACACCGGGACCGACTCAATGCCGAGTTGGACCGACTGGCCAGCCTGTTGCCCTTCACTCCAGAGGTCATCTCCAAACTGGACAAGCTGTCGGTTCTGCGTCTCAGTGTGAGCTATCTCCGCGTCAAGAGCTTCTTTCAAActATTCAGGAGAAATCAAACAAAAAGCAAAGCCCTGCATCCTGCAGCCCTGAGCCCAAAAAACACAGTCTCGGCAACAGCATTCTGGAAAGTGATCTTCTtcttgagTCTTTGACAGGGTTTGCGCTGATTGTTAGCTCAGATGGAGTCATCTTCTATGCTTCCTCTACAATCGTAGACTACCTGGGCTTCCATCAGACCGATGTAATGCACCAGAACGTCTTTGATTATATCCATGTGGACGAGCGGCAGGAGTTCAGAAGACAGCTGCATTGGGCCATGAATCCCCAGCAGGAACACCACTCTCCCTCAggaactgATGAAGACTACATGGTGAGAAGTCTGTTTAACGCTCAAGAGACAGACGGTGTCCCTCCTGAGCTTTCTCCATTCCTCACTCGCTGCTTCATCGCTCGAGTACGCTGCCTGCTTGACAACAAGTCCGGCTTTCTGAGGATGCAGTTCCAGGGCAGTCTGAAGTTCCTCCAAGGCCAGAAGAGGAAGAGTAAATCCGGAGCTTTGCTGCCGCCTCAGCTGGCTCTGTTCTGTGTGGCCGTGCCGCTTGTCCTGCCCTCCATCACCGAGCTCAAGATAAAGGGCATGATAAGCAAACAGAAAGTCTCCAACATCAGTGAAAAGAGGCTCCACATTTCTCGCACTTCTTGTGATGCTGGCGACATGACGCTTAACTGGCACAGTGGATCGTGGGCGACTCTTACCAAAGAAGGCATCCAGTATAAAAGTGAAGGTCTCTGCAGCCAGGACGAGCCCCTTAACTTCTGCGTGTCCTCTGTGGCGGTCCATAAAGTGCAGCCTACGCAAAGTCCCTGGGACTCTCGGTGTCACTCTGCCTCACACAGCGGCTACTTCAGCAGCAAACTGGGGAAGCACGTCCAGTCCGGAAAATTCCGCTTCTCCCCAGGTTGCACTGCTGCGATCTCCCAGTGTAAGCAGTATGGACTCAGCGATAAGGACGGGTACTGTGGGTACAGGAAGACTGAGAGTAGATACATGGCCAATAACGATTGTTACAGCAACCTACTGCTGCCCGAGACTGCCATAAAGACGGAGCACGACTCTGACTCGGAGAACGGATGCAGCGTATATGGCGCGCCCCATAACGGCGTCTGGCGCTACAGCACGCCCTTCCCTGATGCAAACCAGGTGAAAACAGAGGAAGACTATGATGAGTATTATTGCAAGCCTAGCATCACAAACGTCTCTAGCATCAACGGACACCACAAATATCTCTACACAGGAGCGGGCAGGCCGCTAAAATGTGTCCTTAATAAAGACCATTCTGATCCCCACAGCCTCCAGGGTACAAACTGTCACGCATACATGAACAGCTCTGAGTCCAAGGTCTTTATGCAACCCGACTACAAGCTGAGCTACGAGGTGAGGAACCACAGTCTTCTTCACCCCATCAAAAGAGAACCCATGGACTCTCTGCCCTGGACTGACGGTAGCCATGATGTTATTCAAGAACACATGGACAGAAATGAGGCAAATTGTGCACTGAACACAGTGGTGCACAAAACCAGTGCCTATTTGTATATGCAATAATCTTTAGCGCCAAATGCTACATTTTGAAGCTCAGGTATGTGTCTAATTATAGACAGGTGTTAGAACACTTGTTTTTAAGGGCTAGTTCTCTATTAtggcactttaaaaaaaatgacagagtaTTTTGTATGTAATACTTGTAGCATAACCTTTGCAGTTACCTGGTATGGAATTTTACATCATATACAGTTTGCAACTATattgtatatttcatttattgcaTCTTCACACAACCTGATTTTAAATGTACAGACCACAAAAAGAAGGGAAAATTACTTGGTTATGGGATACTATTTATACTACATTGAATTCTCCGTTCTGATTGGTGAGAAGATGTTGaataatttctataacagcagctctgagagtcgCGCACGCTTTCTAATGCgtcatcatttctatagtaacagctcactcacagggacttgtacggcaaacattccacataatctaagactaatgataaatagattttaaaaatatgtgttgttatttaacaaaaaatgtataatcattcaTATCATATATGGATTtgtataaggagatgtttatttaacagtaatgaaggagtctccagtgtcagtactttgtttTCATGGCTCAAAGGAGTTTGTGCTtcctggtttctctgtaacatgagacacttttttttgtttggttgttttttttttcttcaagactgagagaaaaaagagagcctggtgaatgaacgactgtttatagctgctataacataagtgataacaggaactaagttgtttcGTGGACATTTTCTTAACTAAATGGATCTACAGTGTGACGTAATAACTTGAAAATTTTAATCAAAGGCAAAATTGCTGTTTTATAATAGGTTTAAAAACTtcaggcatgctgttataggaaatatcaACTTGATTTGAGAAATTTCACTTGCTGTCAACCACAACTAGTTGAATAAACTTGTAGACTTGTgtattctgttgtttttcagtGCAACCGTTAACGTTAACATGGTGCAACAACGAAATGTATTGATGGAAAACAGTATTCTGCATCGACAGAAATTGTGGCTTGTTCTGTCATTTTGAATTGTAAGCAGTGGTCTGTTTGCGTAGAAACCGGATTTTAAGTCAAAAACTCAAttctgggttttattttttattggttTCTGAAATAAAGTTGAAAAACAAGTTTTGATTTGAAGATCTCAAACAGAGGATGATGCATGCGTTAGAGTCAACTAAAAAGTATCATCTGTTTCTGTATCGTCTGATCAAGAGCACCATTTCATCCGAGGACGAAGATGCTCCTGGCGTCAGATTTGCATGTGCGTGCGAGCGTGCAGGTGACAGGGTGcacttgtgtgtgagtgagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgtatgttatCATgctgcaatgaaaaaaaaattattgcctTATGTCTGAATAAATGTTCTAATTTAACTTTGTCTAAAAATCTTTTGTTTGATAACAGTTGATATTTTGGAGTAAAAAGATAATATTGGTATCattaaaaagtttaaagttaaagtctttttttgtgACTAAATGATGGTGCAGGTcccattataaatattattggACTTTTATG

Function

NR:

description
PREDICTED: aryl hydrocarbon receptor repressor-like isoform X1

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0001191 obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
K09094 AHRR, AHH; aryl hydrocarbon receptor repressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946118.2 True 3684 mRNA 0.43 9 17323911 17347484

Neighbor

gene id symbol gene type direction distance location
mcm6l mcm6l,LOC108280894,LOC108433082,LOC107656140,LOC107713663,LOC107757789 coding upstream 2874 17313082 ~ 17321037 (+)
cul1a LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526 coding upstream 12707 17295164 ~ 17311204 (+)
cntnap2b cntnap2b,LOC108280767,LOC108433079,LOC107713665,LOC107757823,LOC107599243,LOC107663527,LOC107656139 coding upstream 30745 17238926 ~ 17293166 (+)
xcr1b.2 NA coding upstream 242253 17075730 ~ 17081658 (+)
xcr1b.1 NA coding upstream 251954 17066201 ~ 17071957 (+)
exoc3 exoc3,LOC107757821,LOC107656144,LOC107713660 coding downstream 1426 17348910 ~ 17361297 (+)
si:ch211-106n13.3 LOC108280813,LOC108433067 coding downstream 52907 17400391 ~ 17427264 (+)
ccr12a LOC108280814 coding downstream 80426 17427910 ~ 17429725 (+)
hecw1b hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981 coding downstream 86434 17433918 ~ 17477821 (+)
gpt2l LOC108280657,LOC108430180,LOC107599855,LOC107708598 coding downstream 139903 17487387 ~ 17507387 (+)
G321704 LOC108410862 non-coding upstream 363177 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 430887 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 464333 16792714 ~ 16859578 (+)
G321585 NA non-coding upstream 534304 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 551462 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 178087 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 283730 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 374454 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 507064 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 726845 18074329 ~ 18074748 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 464229 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 530213 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 534943 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 575571 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 1191547 16131335 ~ 16132364 (+)
fuz fuz other downstream 131350 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 223165 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 241588 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 878437 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1046539 18394023 ~ 18430022 (+)

Expression


Co-expression Network