pif1 (pif1,LOC107551719,LOC104945614,LOC107700539)


Basic Information

Item Value
gene id pif1
gene name pif1,LOC107551719,LOC104945614,LOC107700539
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19316638 ~ 19330869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946129.2
gtgtatttaaatgccccgatctgattggctgttccaGCTTAAAGCTTTCAGTTTGAAATTTGCGGCGTGTGTTTGTTGCTGTGGTGAAGTGAAGCGAGCCGGGGTCCGGGATGCTGCATGCGGAGGATGGAGCGAGGCTGGAGTGCGGTGTTGCAGTGGAGCGTGTGAGTGGAGCATCAGCAGGTCATGCGGTACAGCGCCGGGTTCTCCGCCGTGCTGTGGTCACTCTGGGCCGGGACGAGTTCCGGGAGCTGGTGCTGCGCGTTCAGGACGTCCGAGGTGGACCCCATGAGAGCTTTGCTTTACGTAGTGACTTCCGGCTCTTCACGCGGTTTGTCAAGGATGGCAAGTGCACGGTGAACTTCCCGCAGAACAACGTGCAGCTCCTGATCTCTGACTGTCCACCTGACCGCCTGAAAACCTTCCTGAAGACCCTGAGTATAAAGCATGAAGCCTCACGGGGCAGTAACCCTGTCAGTGAAAGGGCCCGGATGCGGGCGGGTGTCCCGAGAAGCTTCGAGATCATCAGCCCTGTGCAGCAGAAAGACATCCAGAAAGCCAACGAGTTAAGGAGCAAAGTGAACGCCCCGGTGCAGGTGAAAGCGCTAACGGAGAGAGCTGTGAACAGAACAGACGTGCGACAGCAGCTCAAACGACCCCGAACGGACAGAGACAGCAGCCCGGTTAAAGCTCTCCATCCTCACAAGAAGCCCGTCCTGACGTTGCCAGTTGCACAAAAACTCAGCAAAGAACAGATGGCGGTTCTGAATGCAGTACTGAGCGGGAAGAACGTGTTTTTCACTGGAAGTGCagGTACGGGGAAGTCCTTCCTGTTGAAAAGGATTGTGGGATCTCTGCCTCCTAAAAGCACGTACGCCACGGCCAGCACCGGTGTGGCTGCCTGTCATATAGGAGGGACGACATTACACAGTTTCGCAGgtatTGGCTCGGGTTCGGCTCCTCTGGAGCAGTGTTTGGAGCTCGCACAGCGGCCGGGGGTCCTGCAGCACTGGACCAGCTGCAAACACCTCATCATCGACGAGATCTCCATGGTGGAGGCCGAGTTCTTCGACAAGCTCGAGTCCATCGCCAGGTCAATTAGAAGATCCACGGAGCCTTTCGGAGGAATTCAGCTGATCGTGTGTGGAGATTTCCTCCAGCTTCCTCCCGTCACTAAAGGACATGAGAAACCCAGCTTCTGCTTCCAGGCGAGGAGCTGGAGGAAGTGCATCCACGTGAACATGGAGCTGACGGAGGTGCGCAGGCAGACGGACCGCACCTTCATCTCGCTGCTGCAGGCCATCCGACTGGGCAGaGTCACTGAGGAAGTCACTGCCCGGCTCCTGAAGAGCGCCAGTAACCCCATCGAGCGGGACGGTATCGTAGCGACCAGGCTGTGCACACACAAGGACGACGTGGAGCTCACTAACGAGAACAAACTCAAGCAGCTGCCAGGGCCCTTACGTGTGTTCGAGGCTCTGGACAGCGACCCCATGCTGGTTAAAACCATCGACGCACAAAGTCCAGTGGGTCACACGTTACAGCTGAAAGTGGGAGCTCAGGTTATGCTCACCAAGAACCTGGACGTCCAGAGAGGGCTGGTGAACGGTGCGAGAGGTGTCGTGGTTGACTTCCTACCAGGAAATCAAGGCCTCCCGAGAGTGCGCTTCCTGTGCGGTGCTGTAGAAGTGATGAAGCGCGAGCGCTGGACGTTTAAAGCGGCTGGAGGCGTGTACCTGAGCCGACAGCAGCTCCCATTAAAGCTAGCCTGGGCCATCTCCATCCACAAGAGTCAAGGCATGACTCTGGACTGTGTGGAGATCTCTCTGGCCCGCGTGTTTGAGAGCGGACAGGCTTACGTAGCTCTGTCTCGAGCCCGCAGTCTGGAGGGGCTTCGTGTCATGGACTTCGACCCACGAGTGGTCCAGGCAAACTCAGACGTTCTGATGTTCTACAAGAAGCTGAAGAGGGACAGACTCCTCCTGCAGTCGTCCATGAATGACTTTGTTGGGAAAAGCAACAAGGAGAATGAAGTTTGGTGATGAGATCTCCACATCACGACCCTGTGCACTGTGTGTACGACCCGACTCGACTGATCTGtcactttttaattaatttatcatgatttcAGTTTGACGTCATCATGCTGctgctgtaaaatgttttgctcTACATGTAGTTGTAGTGttggaatgagtgtgtgcattttactttttatccctggttgtatttgattttaatatatttttatttttttaagaa

Function

symbol description
pif1 Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to act upstream of or within DNA recombination; DNA repair; and telomere maintenance. Predicted to be located in mitochondrion and nucleus. Predicted to be active in replication fork. Is expressed in ectoderm; head; optic tectum; pectoral fin musculature; and proliferative region. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0000723 telomere maintenance biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K15255 PIF1; ATP-dependent DNA helicase PIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946129.2 True 2262 mRNA 0.55 13 19316638 19330869

Neighbor

gene id symbol gene type direction distance location
nsun4 nsun4 coding downstream 2964 19310150 ~ 19313674 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding downstream 87042 19226750 ~ 19229596 (-)
LOC113546473 NA coding downstream 119144 19190314 ~ 19197494 (-)
dipk1aa LOC108280758,LOC108436064 coding downstream 224949 19078723 ~ 19091689 (-)
gfi1aa LOC108280759 coding downstream 263496 19043896 ~ 19053142 (-)
LOC113546452 LOC108280527 coding upstream 33877 19364746 ~ 19384317 (-)
st3gal3b LOC108280530 coding upstream 62384 19393253 ~ 19456415 (-)
ptprfb ptprfb,LOC108280478 coding upstream 181853 19512722 ~ 19668895 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 578240 19909109 ~ 19985267 (-)
tmem275 LOC108280259 coding upstream 775103 20105972 ~ 20110891 (-)
G323092 NA non-coding downstream 1168 19314511 ~ 19315470 (-)
LOC117599938 NA non-coding downstream 41242 19230354 ~ 19275396 (-)
G323088 NA non-coding downstream 96420 19217843 ~ 19220218 (-)
LOC117600001 NA non-coding downstream 112258 19198060 ~ 19204380 (-)
G323007 NA non-coding downstream 249890 19055487 ~ 19066748 (-)
G323298 NA non-coding upstream 55362 19386231 ~ 19386432 (-)
G323303 NA non-coding upstream 60288 19391157 ~ 19391357 (-)
G323308 NA non-coding upstream 107354 19438223 ~ 19493730 (-)
G323327 NA non-coding upstream 271240 19602109 ~ 19602336 (-)
LOC117599987 NA non-coding upstream 479599 19810468 ~ 19814211 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 238721 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 310259 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 322002 18985173 ~ 18994636 (-)
G322826 NA other downstream 561045 18753772 ~ 18755593 (-)
G322538 NA other downstream 921815 18394249 ~ 18394823 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 145243 19476112 ~ 19507197 (-)
G323726 NA other upstream 864425 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 1053332 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 1131146 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 1335422 20666291 ~ 20714017 (-)

Expression


Co-expression Network