sdr16c5a (LOC108280727)


Basic Information

Item Value
gene id sdr16c5a
gene name LOC108280727
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18799203 ~ 18810210 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946133.2
CGGAGGAGCAGTCACGTGACTCCGGCTTGTATTTCCCAATGGTGGTGTAAGAGAGTGAATTAAAAGCACTTCAGAGCTCTTTAACTCCTGTTTAACACCTACAGACGGAGCAGGTCACACAGGTGGCATTCAGCATGAACTTTCTCCTGGATACTCTGCGTGTGCTGGTGCTGTCTGTCTACTACTTCCTGGAAGCCTTCTTGAAGTTCCTCCTGCCGGTGGGGAAGAAGAGCCTGGCCGGGGAGACGGTGCTGATCACGGGGGCGGGCAGCGGCATCGGACGCATCATGGCCACCGAGTTCGCCAGCATGGACGTCACGCTGGTGCTGTGGGACATCAACCTGGACGGGGTGAAGGAGACGGCTCGGGCGGTTAAAGAGAAGGGCGCTCAGAGTGTGCACTACTATCAGGCCGACTGCAGCGACCGGGCTGAAGTGTACCGAGTGGCCGACCAGGTCAGACAGGAAGTCGGAGATGTCACAATCCTCATAAACAACGCTGGCATCGTCACCGGCAAGAGGTTCATGGATTCTCCAGACACGCTTGTCGAGAAGACGCTCCAAGTTAACACCATGGCTCACTTCTGGACGTATAAAGCGTTCCTTCCAGCCATGACGGAGAAAAACCACGGCCACCTGGTCTGCATCGCCAGTTCTGCAGGACTGATCGGTGTTAATGGTCTCGCAGATTATTGCGCTAGCAAGTTCGCTGCCGTGGGCTTCGCCGAGTCCGTGGCCCTGGAGCTCATAGCCACAGGAAAAGAAGGCATCAAGACGACTATAGTGTGTCCGTATTTCATCAACACGGGGATGTTCGACGGCTGTGGCACCAAatggCCACGTTTGCTTCCTATCCTGGAACCTGAGTACGTCGCAAAGAAGATCATGAACGCCATTGTGACAGACCAGACCTACCTTTTAATGCCAAGGAGCATGTACTTCTTACTGTTTTTGAAAAGTTTCCTGCCGTATAAGGAATCCGTGATCCTGGGCATGTACTTCGGAGCCTTCAACTTCATGGATGCTTTCAAAGGAAGACAAAAGAAAGTGAATTAATCCGAGATTGATTTGTCCTTTTCTGTTACTttaacaacattttatttataatttttattacaatgaataataataataatactgtaaagAATACGTAACCACTTTCAGATGTTATTATGGGACCAAACAATACAGCAGATCTTGAATGTTGTCCAGTGGTGCCTTATcgaatctgtatttttttaaaaatctgtttacataTTATGCTGTGTCATAGTAACCATACCATCCACTTGAAATGCATTCTTTCATTTGTCAGACATTAATGAGTGTTAATGTGTAGGACCAAAGCcatttcagcattaatacactgCACCACTGTTGTATTTGTCACTGATATTTCAGTTGAGttgtgaagatttttttttttttagttaagaaacattgtttaCTTAGAAATAGACTGCAGGGACGTCGTTTTGAGAAGACACACCTACAATATCTTATTAAATATCTGTTTACCAGCCTGCAAAATGAAATGCTTGCTGTGACCAGGTTTATGTACCGTATGTAGGGGAGAGTGGGGTCAGCTGTAACACTCTCTGTTCCTCCAATCGGCAACCCGCTCTCAGATTTTGAGGTATGAAAGTAAATTTCCTGAAGAACGTTTTGAATTATATGTTAATTCTGTGTGCAGATGAAACCGTAATATACTAGTTTTGCCTATTTCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946133.2 True 1726 mRNA 0.46 7 18799203 18810210

Neighbor

gene id symbol gene type direction distance location
penka LOC108280728 coding upstream 1342 18791345 ~ 18797861 (+)
bpnt2 impad1 coding upstream 35715 18756729 ~ 18763488 (+)
mffb LOC108280720 coding upstream 45143 18747527 ~ 18754060 (+)
LOC113546386 LOC108280704 coding upstream 82651 18692192 ~ 18716552 (+)
cwc25 cwc25,LOC102792885,LOC101487873 coding upstream 131631 18663158 ~ 18667572 (+)
cryz cryz coding downstream 108857 18919067 ~ 18925573 (+)
fam151a fam151a coding downstream 120849 18931059 ~ 18936790 (+)
cdcp2 cdcp2 coding downstream 185347 18995557 ~ 19002207 (+)
cdc7 cdc7,LOC102782901 coding downstream 196317 19006527 ~ 19014193 (+)
rpap2 rpap2 coding downstream 217671 19027881 ~ 19042630 (+)
G322738 NA non-coding upstream 33601 18765192 ~ 18765602 (+)
G322696 NA non-coding upstream 78764 18715395 ~ 18720439 (+)
G322462 NA non-coding upstream 359337 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 366501 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 425320 18370727 ~ 18373883 (+)
G322744 NA non-coding downstream 895 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 2293 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 4404 18814614 ~ 18814817 (+)
G322802 NA non-coding downstream 148873 18959083 ~ 18959319 (+)
G322817 mrpl37 non-coding downstream 183548 18993758 ~ 18994623 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 369181 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 571970 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1132990 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1162594 17570649 ~ 17636609 (+)
fuz fuz other upstream 1315526 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 5799 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 134488 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 394448 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 503650 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1319043 20129253 ~ 20281067 (+)

Expression


Co-expression Network