mcm6l (mcm6l,LOC108280894,LOC108433082,LOC107656140,LOC107713663,LOC107757789)


Basic Information

Item Value
gene id mcm6l
gene name mcm6l,LOC108280894,LOC108433082,LOC107656140,LOC107713663,LOC107757789
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17313082 ~ 17321037 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946145.2
ATGGAGCCTGCGACAGAAACTCCCAACGCAGGCGTGCAAGTGCGGGATGACCTCGCCGAGAAATGTCAAAAACTGTTTCTAGAGTTTTTGGAGGAGTTTCAGGATAAAACTGGCGACCCGCTGTATTTAGCAGAAGCTCAGGAGCTGATCCGACCAGAGAGAAACACTCTGACTGTGAGCTTCACCAACATTGAACGCTATAATCAACAACTGGCAACCACGATTCAGGAGGAGTACTACAGGGTGTACCCGTTTCTCTGTAGAGCGGTGCGTCACTTCGCTCGGGACCATGGAAACATCCCACCATCCAAAGAGTTCTACGTGGCCTTTTCTGATTTTCCTTCAAGACAAAAGATCCGTGAGCTTTCAACTGCACGTATCGGCACTCTGCTGCGTATCAGCGGGCAGGTGGTGCGTACACACCCTGTTCACCCAGAGCTGGTGAGCGGTACTTTCCTCTGCCTCGACTGCCAGTCTGTCATTAAAGATGTGGAGCAGCAGTTCAAATATACGCAGCCCACCATCTGCAAGAACCCTGTGTGCGCCAACCGACGCAGGTTCATGCTGGACACCAATAAGTCACGCTTTGTCGACTTCCAAAAGGTGCGTATTCAGGAGACTCAAGCGGAGTTGCCCCGAGGCTCTATCCCACGCAGTGTGGAGGTGATTCTGAGGGCCGAGGCCGTGGAGGCCGCACAGGCTGGAGACCGCTGTGATTTCACCGGGACTCTCATTGTGGTTCCAGACGTGTCTGCCATGGCTCTCTCGGGTACTAGGGCAGAGACCAGCAGCAGGGTGACTGGAAAGGAAGGTTTTGAGGCTGATGGGATCCAAGGTTTAAAGGCTTTGGGAGTAAGAGAGCTGTCCTATAGACTGGCCTTTCTGGCCAACCATGTTGCTCCGACAAACCCCAGGTTTGGAGGCCAGGAGCTGCGTCAGGAAGATCAGAGTGCGGAGAGTGTGAAGAATCAGATGACCGTGCAGGAGTGGGAGAAAGTGTTTGAGATGAGCCAGGACAAGAACCTTTACCACAACCTCTGCACCAGCCTCTTCCCTACCATCCATGGGAATGATGAAATCAAGCGTGGGATATTGCTCATGCTTTTCGGTGGTGTCGCCAAGACCACCATGGAGGGAACATCTCTAAGAGGAGACATCAATGTTTGCATTATCGGTGATCCCAGTACTTCCAAAAGCCAATTTCTCAAgcaTGTTGAAGACTTTGTTCCCAGGGCTGTGTACACGAGTGGGAAAGCCAGCAGTGCTGCCGGTCTCACTGCCGCTGTGGTCAAAGACGAGGAGTCACATGAGTTTGTCATCGAAGCTGGAGCCCTCATGTTGGCCGACAATGGAGTATGCTGTATTGATGAGTTTGATAAGATGGACTTGAAGGACCAAGTGGCCATCCATGAAGCCATGGAGCAGCAGACCATCTCCATCACCAAGGCTGGAGTAAAGGCTACTTTGAATGCCCGTACTTCTATCTTGGCAGCAGCCAATCCCATTGATGGCAGGTACAATCGCTCCAAGTCTCTGAAGCAGAATGTCAACATGTCTGCCCCCATCATGTCCAGATTTGACCTCTTCTTCATTCTGGTGGACGAATGCAATGAGGTGACAGATTATGCCATAGCCAGGCGAATTGTAGACCTCCATGCCAGGAATGTGGAGTCAGTAGAACGTGTCTATGCTGCAGAAGACATCCAGAGATACATACTGTTTGCCCGACAGTTTCAGCCAAAGATCACCCCAGAGGCCCAGGAGTTTGTTGTGGAGCAGTACAAGCGGCTGCGTCAGAGAGACGGAGGCGGCACGACGAAATCGGCTTGGAGGATCACTGTGCGGCAGCTGGAGAGCATGCTGCGTCTGTCTGAGGCCATGGCCCGTCTCTACTGCTCAGACGAGGTTCAACCTAAACATGTAAAAGAAGCATTTCGACTTCTGAACAAGTCTATCATTCGTGTTGACTCACCTGATATCAACTTTGACCAGGAACAAGATGAAGATATGAATGATCAGAATGGGCAGTTGGCTGGGGAGATGCAGGGCCAAAATGGTGTTGCTGGTGATGCAGTGGAGGCCATGGACACCGGTGAGGCAGAGCAGCAAGAGAAGACGGCGACAACCAAACCGGCTCTCCGCATGTCCTTCGCAGAGTACCGCCGAATCTCCAACCTGCTGGTGCTGCACATGCAGAAAATGGAGCAACtgGATGAAGAGTTGTCTCTAAAGAAGAGCGAGCTCATCAACTGGTACTTGAAGGAAATTGAGAGTGAGATTGAGTCTGAGGCTGAACTCATTGCCAGGAAGAATCTTATCGAGAAAGTGTTGTATCGGTTGATCCATTATgaCCATATCATCATAGAATTGACCAAAACCGGCCTAAAGAAGGTCACAGATGAAGGAGAAGAGCCTGTTATGGAGGAAGACCCTTTCCTAGTGGTTAATCCTAATTATGTATTGGAAGACTAGAGGAGAGTGGCATTGATTTGTCTTTTTCCACCCCTTCTtggctatttattatttattgtttatgatgaataaattaaaagtgGGAACATTGGt

Function

symbol description
mcm6l Predicted to enable single-stranded DNA binding activity. Predicted to contribute to single-stranded 3'-5' DNA helicase activity. Predicted to be involved in DNA-dependent DNA replication and double-strand break repair via break-induced replication. Predicted to act upstream of or within DNA duplex unwinding and DNA replication initiation. Predicted to be part of MCM complex. Predicted to be active in nucleus.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02542 MCM6; DNA replication licensing factor MCM6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946145.2 True 2565 mRNA 0.50 17 17313082 17321037

Neighbor

gene id symbol gene type direction distance location
cul1a LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526 coding upstream 1878 17295164 ~ 17311204 (+)
cntnap2b cntnap2b,LOC108280767,LOC108433079,LOC107713665,LOC107757823,LOC107599243,LOC107663527,LOC107656139 coding upstream 19916 17238926 ~ 17293166 (+)
xcr1b.2 NA coding upstream 231424 17075730 ~ 17081658 (+)
xcr1b.1 NA coding upstream 241125 17066201 ~ 17071957 (+)
ghrhra LOC108280336,LOC108433063 coding upstream 321970 16975923 ~ 16991112 (+)
ahrrb LOC108280895 coding downstream 2874 17323911 ~ 17347484 (+)
exoc3 exoc3,LOC107757821,LOC107656144,LOC107713660 coding downstream 27873 17348910 ~ 17361297 (+)
si:ch211-106n13.3 LOC108280813,LOC108433067 coding downstream 79354 17400391 ~ 17427264 (+)
ccr12a LOC108280814 coding downstream 106873 17427910 ~ 17429725 (+)
hecw1b hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981 coding downstream 112881 17433918 ~ 17477821 (+)
G321704 LOC108410862 non-coding upstream 352348 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 420058 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 453504 16792714 ~ 16859578 (+)
G321585 NA non-coding upstream 523475 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 540633 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 204534 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 310177 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 400901 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 533511 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 753292 18074329 ~ 18074748 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 453400 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 519384 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 524114 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 564742 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 1180718 16131335 ~ 16132364 (+)
fuz fuz other downstream 157797 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 249612 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 268035 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 904884 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1072986 18394023 ~ 18430022 (+)

Expression


Co-expression Network