mffb (LOC108280720)


Basic Information

Item Value
gene id mffb
gene name LOC108280720
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18747527 ~ 18754060 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946146.2
CTAGAACGCAGGCGCGCGGATTGGAGCGCGGCCCCCAGCAGGTTGTGTGGctgtatggatggatgaatggatggagggTGCAGTCAAACACATCATCAGGATTTACACAAAATACTGAGCTCGTTAAAATATTCCGAGCAACCTGTTGATCtagtttgtaaaataattcGGATAAGTGAAGCTTCAGACATGTAAAAGCGAAACCAAGAGACGAACGCCAGCATCAGGGAAGCTAGCAGCCGTTCAGGAAATGAGCGAGGGCGACTTCGCCATCATGGCCGACATGGCTGAAGTAAGCCGCATACAGTACGAGCTGGACTACACCGAGGGCATCAGCCAGCAGATGAGGATCCCCGACAGGCTGAAAGTCGGACCGGGTTCGTCGATGGTCCAGCCTCCGCTGTTCCCCGAGGAGCCCCACAGCACCCTGATGCAGGTTCCAGACAGGATCGTAGTGGCAGGGCACGAAGTCGATCCTCACTTCAGCAGGCCACGAGAGCTGGATCTGATCCAGTCCATCCCAGTGGAGAGCGTGGAGCTGAAGACTCCTCCACGGGTCCTCACTCTCCAAGACCAGGCTCTGGACTTCCTGGAGCCGGTGCAGCAACCAGGACCCGCTCAGCTGAAAGAGGAGaTTCGCTCTCACACAAGATCCCGGCGTGAACGTTGCGTCAGCGAGACTTTGGGAGCGTGTCACAACGGCCAGATTGTCAAATACGATGCCGTGAGCCCGTCTCCCAGCGCTCCTGTCCGTGTTTGTCCCCCGCTTGTGTCCCCCGAGGACTGGCCAAGCGTGGGCACTGTGGGCGGAGTCCTGTCCTACATCCAGCTCACCACACGCCGGGCCTACGAGCACGTCCTGGCCATGCTGGACGACTCGCACCGCAGGACTGCACTTGTGACTCTTGATGCTGGTTTGGAAGGGGCTCCTGATGACCTGGCGTTAGCCGACGCCCCAGCACTAAGACGACAGATTGTGAAGTTGAACCGTAGACTTCAGGTGCTGGAGCATGAGAATAAAGAGCGAGTGAGGCGGGAGATGGTGATGTACTCCCTCACCGTTGCTTTCTGGCTGGTGAACACGTGGATGTGGGTACGCCGCTGAGCGCTGGAGCCATCGCCTCGATCCACTCATCATCTCAGGCTGCATTTAATCAGACTCTCAGATCTCCCTTTTGTATATATCTACATTCATTATCACTCAGATATTCTTCCTAATGTCTAAACTCAGACCAGATACCAaaaattagctaaaaaaaaaaaaaa
>XM_026946147.2
CTAGAACGCAGGCGCGCGGATTGGAGCGCGGCCCCCAGCAGGTTGTGTGGctgtatggatggatgaatggatggagggTGCAGTCAAACACATCATCAGGATTTACACAAAATACTGAGCTCGTTAAAATATTCCGAGCAACCTGTTGATCtagtttgtaaaataattcGGATAAGTGAAGCTTCAGACATGTAAAAGCGAAACCAAGAGACGAACGCCAGCATCAGGGAAGCTAGCAGCCGTTCAGGAAATGAGCGAGGGCGACTTCGCCATCATGGCCGACATGGCTGAAGTAAGCCGCATACAGTACGAGCTGGACTACACCGAGGGCATCAGCCAGCAGATGAGGATCCCCGACAGGCTGAAAGTCGGACCGGGTTCGTCGATGGTCCAGCCTCCGCTGTTCCCCGAGGAGCCCCACAGCACCCTGATGCAGGTTCCAGACAGGATCGTAGTGGCAGGGCACGAAGTCGATCCTCACTTCAGCAGGCCACGAGAGCTGGATCTGATCCAGTCCATCCCAGTGGAGAGCGTGGAGCTGAAGACTCCTCCACGGGTCCTCACTCTCCAAGACCAGGCTCTGGACTTCCTGGAGCCGGTGCAGCAACCAGGACCCGCTCAGCTGAAAGAGGAGaTTCGCTCTCACACAAGATCCCGGCGTGAACGTTGCGTCAGCGAGACTTTGGGAGCGTGTCACAACGGCCAGATTGTCAAATACGATGCGACTGCACTTGTGACTCTTGATGCTGGTTTGGAAGGGGCTCCTGATGACCTGGCGTTAGCCGACGCCCCAGCACTAAGACGACAGATTGTGAAGTTGAACCGTAGACTTCAGGTGCTGGAGCATGAGAATAAAGAGCGAGTGAGGCGGGAGATGGTGATGTACTCCCTCACCGTTGCTTTCTGGCTGGTGAACACGTGGATGTGGGTACGCCGCTGAGCGCTGGAGCCATCGCCTCGATCCACTCATCATCTCAGGCTGCATTTAATCAGACTCTCAGATCTCCCTTTTGTATATATCTACATTCATTATCACTCAGATATTCTTCCTAATGTCTAAACTCAGACCAGATACCAaaaattagctaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0090314 positive regulation of protein targeting to membrane biological_process
GO:0090141 positive regulation of mitochondrial fission biological_process
GO:0005777 peroxisome cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946146.2 True 1266 mRNA 0.55 7 18747527 18754060
XM_026946147.2 False 1101 mRNA 0.53 6 18747527 18754060

Neighbor

gene id symbol gene type direction distance location
LOC113546386 LOC108280704 coding upstream 30975 18692192 ~ 18716552 (+)
cwc25 cwc25,LOC102792885,LOC101487873 coding upstream 79955 18663158 ~ 18667572 (+)
fgf12a fgf12a,fgf12,LOC108280711,LOC108436038,LOC106568709,LOC105006885,LOC106598267,LOC103365152,LOC107549734 coding upstream 109823 18585063 ~ 18637704 (+)
mb21d2 mb21d2,LOC107705301,LOC107572431,LOC107673980 coding upstream 165307 18574380 ~ 18582220 (+)
crfb16 NA coding upstream 175024 18562098 ~ 18572503 (+)
bpnt2 impad1 coding downstream 2669 18756729 ~ 18763488 (+)
penka LOC108280728 coding downstream 37285 18791345 ~ 18797861 (+)
sdr16c5a LOC108280727 coding downstream 45143 18799203 ~ 18810210 (+)
cryz cryz coding downstream 165007 18919067 ~ 18925573 (+)
fam151a fam151a coding downstream 176999 18931059 ~ 18936790 (+)
G322696 NA non-coding upstream 27088 18715395 ~ 18720439 (+)
G322462 NA non-coding upstream 307661 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 314825 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 373644 18370727 ~ 18373883 (+)
G322405 NA non-coding upstream 404037 18338329 ~ 18343490 (+)
G322738 NA non-coding downstream 11132 18765192 ~ 18765602 (+)
G322744 NA non-coding downstream 57045 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 58443 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 60554 18814614 ~ 18814817 (+)
G322802 NA non-coding downstream 205023 18959083 ~ 18959319 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 317505 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 520294 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1081314 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1110918 17570649 ~ 17636609 (+)
fuz fuz other upstream 1263850 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 61949 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 190638 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 450598 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 559800 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1375193 20129253 ~ 20281067 (+)

Expression


Co-expression Network