tmtopsa (tmtopsa,LOC108280164,LOC108430153)


Basic Information

Item Value
gene id tmtopsa
gene name tmtopsa,LOC108280164,LOC108430153
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18073134 ~ 18104805 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946159.2
GCGATGGTTTGGTCCAACGGGAGCGCGAGCGGCTGCTGCGGATCCCCGGGGTATGTCTCGGACACCGGAGCGGCTCGCGACTCCCAGCTCAGCCTGAGCCCGACCGGACACTCGGTGGTGGCTGCGTGCCTCGGGCTCATCTCCACCTTCGGCTTTGTGAACAATCTGCTGGCGCTGGTGCTGTTCGGCCGCCACAAGGCGCTGCGCTCTCCCATCAACCTGCTGCTCATAAACATCTCACTGAGCGACATGCTCGTGTGCGCGCTGGCCACGCCGTTCAGCCTCGCCGCCAGCACGCGCGGACGCTGGCTTGCGGGACGCACCGCATGCGTGTGGTACGGCTTCGCCAATTCGCTCTTCGGCATTGTGTCACTCATCTCCCTGGCTGTGCTTTCCTATGAGCGCTACTGTACCATGACGTGTCCTGCCGAGCCTGACGTCACCAACTACAGGAAAGTTGCATTGGGAGTTGTGCTGTCCTGGGTCTACTCCCTCATCTGGACTCTGCCTCCGTTCTTTGGTTGGAGTCGCTACGGACCCGAGGGGCCCGGAACTACCTGCTCGGTGGACTGGACTGCCAAGACGGCCAACAACATCTCCTACATCATCTGCCTCTTTATCTTCTGCCTCATCCTCCCATTCCTCGTCATTGTGTACTCTTATGGGAAGCTGCTGCATGCTATCAGACAGGTGAGTGGCTTGAAGACTTCCACTGGCCGGAAGCGGGAGCACCGCGTCCTCCTCATGGTCATCACTATGGTGGTGTGTTACCTGCTCTGCTGGCTCCCGTATGGCATCATGGCACTGCTGGCTACGTTCGGAGCGCCAGGTCTGGTGACAGCCGAGGCTAGCATCGTGCCCTCGCTCCTGGCCAAGACCAGCACCGTCATCAACCCCGTCATCTACGTCTTCATGAACAAGCAGttcAACAGATGTCTCCGATCTTTACTCAAATGCGACGCGACCCAACAAGGCTCCATTTTGAAGAGCTGGTCGAAAGCAAACAAACCCATGAGGCGCACTGACAACAACCTCACGTTCATGGCTGCGTCAGTGGATCACAGGTCAGCAGCACCCAGTACCTCAAAGAGCAACAAGGAGCCTCCATCGACAGACTCGGCCAAACCGCCAGCGCTGTCCCTCGTGGCTCATTACAATGGCTCGTTCTGAGAGTAAGACTCTGCAATGCGACACAAGCGATGATAAACCTCCTGTTTTTTACATTGGAAAGAGTGAACTACAGGCTATGCTTGAGATCCAAAATAAGAGAACTCGTATGCCATTCATCAAATACCtcaaactgattaaaaaaaaggccaatGTTTACATCTGATCACCTCAATTTCTTTATCTAATCTTTGCAGCTATGCGTGCCACAtgcgattaaaaaaaatcacccttTTCCAAAGATCTTCAGTGTGTGCAAATATAAATCTGTGCCTGTATAAATCTGGCTCATTTTTGATAAAGCGTTTCCTGGGGCCTGCAGCTTGGGTCTTTTCTTCCCCCAaggaacttttttaaattatatttgtgaaATCTACTTCTCTCTTTGACAGAACATGGAAGCAGGGTCTTTGCTACACCATAGACTGCAAGAATTTTTTAAAGCCAATATGCAGTATGAAAGAAAAcgtacagcaaaaaaaaaaaaaagttccagtGCAAGTTAAATGGGTGTGAAGTCAGAGTTGGAGACTGGTCTATGTTACTGCTGCAAGTATTAAAAATTGGAATCACTGTTCTATATTCCTGCTGTGGTACTTTGTAAAATTGCCATATATTCATTTTCAGATGCTGCTAATCATCTGAAAATTTGATCAGTCATCTACAGTGACCATAAATTGTGCCATTTTTGTACAAATTCATAAAGATTACATAAAATACTACCATTAATCCAACTTTGATATAATTATAGCATTTTTGAAACATAATATGAAAAGAGGTATAGCGTGTGAGAGCAATAttcaattcattaaaaatgtctaCTTCTGTACCTACcaacaatgcaaaatattttgtacagATGTGTGTTGTGCAATCTGTCCAATTAAAACGCAGCTCAGCCAAACCCTTGGTTTATTGGAGTGAACTTCCATTGGAAGCACAATGCCAGTGCCATGTCTTTTGGGTTAACATAGTggttgcatgttttgttttattttccttatcaatttctttcttttttaataagaaatcaACTTAAGCATGTTTTTCAGTGAGTTATGTTTATCTAAACTGTGGAAGAATCTTGAGAATGGTTAAAGATGGGTTCCAAGAGAATACGTCCAAGGCTTGACAAGATATCCCTAGTGTCCAGATGTGGAGAAGGGAGTTTTCACAAGATGTTTTTGGCTTATTATAAAAAATCTCATGTATTGttcctttctctgtttttcattatttcagatTAAGATTTCTGTTAAACTCTTAAGCTTTTGTCTCTAGGATTAGTGCCAAAGATTAATGATATATCTATCAGTTgtctaataaatatacatatatgttgTCCCTCTGGTGGAACCTTTAAAAGTTTCAAGTAGAAACCTACAAAAGAGTTTCTCTTTTTCTGAATGGAtgttccttaagggttctttggctGGTTAAGAGCTCTAGCGTTCTTGAACCTTATCTGACAAGGAAActctttgttgtagggttctacataggacctttaagggttcctccagagggacaaaTCCACTCCACTGTGTATATTTGAGAAATATGTATATGGATATTATTTTTTGGGacacattttgtaaaatggTAAAAGAACCATTAGGGGAACTCGTACGAATTGTAAGATTTCATTTCTGTGAAAAATAGCCTGTGTGTGGCCAGTGTTCTCTTGTGCATCTTGTGATAATCACGTCTACTGTTCTTGACTTAAATAGCCTTTAGTTGCTTTATCCTTCATAcaattagttttgtttttagctGTCTCAAAAGGTCAGTCTGTTCTGCTGTCTTTATTAGATATTACTCCATATGCACTAAGGGTCCCTGGAGGttctagtggttaggccacagtgctctcaccgctgcagcccaggttcgattcctggccaggcaACCAAACAATGCACTCctagtgccggtcccaagcctggatacaATCGCCctaggaagggcatccggcgtaaaaactgtgccgaaacaaatatgcagaccaatgatccgctgtggcgacccctaacaggagcagctgcaAGAACAACAGCTCCATGTGAGCTAAATTGGACATGCGTTATTTTTTCTGATTACTCACAGACTTAAACACAAACTGGGTGTTTTATAGCTTTTAGAGTCTTTTGGCATTGTGGACTTTTTGGGACATCTTGggatttcaaaaaaaaagtgactgtgATCCAATAAAggtcacatttctgaaaaaaaaaacaaacagactgtttaatgtgtttaaaggGATATCAGTTTGGGGCATTCAAGAGTACCGAAAGctcatttttttccaccatgggaaatataactacatattgaa
>XM_034314530.1
GCGATGGTTTGGTCCAACGGGAGCGCGAGCGGCTGCTGCGGATCCCCGGGGTATGTCTCGGACACCGGAGCGGCTCGCGACTCCCAGCTCAGCCTGAGCCCGACCGGACACTCGGTGGTGGCTGCGTGCCTCGGGCTCATCTCCACCTTCGGCTTTGTGAACAATCTGCTGGCGCTGGTGCTGTTCGGCCGCCACAAGGCGCTGCGCTCTCCCATCAACCTGCTGCTCATAAACATCTCACTGAGCGACATGCTCGTGTGCGCGCTGGCCACGCCGTTCAGCCTCGCCGCCAGCACGCGCGGACGCTGGCTTGCGGGACGCACCGCATGCGTGTGGTACGGCTTCGCCAATTCGCTCTTCGGCATTGTGTCACTCATCTCCCTGGCTGTGCTTTCCTATGAGCGCTACTGTACCATGACGTGTCCTGCCGAGCCTGACGTCACCAACTACAGGAAAGTTGCATTGGGAGTTGTGCTGTCCTGGGTCTACTCCCTCATCTGGACTCTGCCTCCGTTCTTTGGTTGGAGTCGCTACGGACCCGAGGGGCCCGGAACTACCTGCTCGGTGGACTGGACTGCCAAGACGGCCAACAACATCTCCTACATCATCTGCCTCTTTATCTTCTGCCTCATCCTCCCATTCCTCGTCATTGTGTACTCTTATGGGAAGCTGCTGCATGCTATCAGACAGGTGAGTGGCTTGAAGACTTCCACTGGCCGGAAGCGGGAGCACCGCGTCCTCCTCATGGTCATCACTATGGTGGTGTGTTACCTGCTCTGCTGGCTCCCGTATGGCATCATGGCACTGCTGGCTACGTTCGGAGCGCCAGGTCTGGTGACAGCCGAGGCTAGCATCGTGCCCTCGCTCCTGGCCAAGACCAGCACCGTCATCAACCCCGTCATCTACGTCTTCATGAACAAGCAGGCTTTAAGACATCGTCTTTATATTAGAAAACAACACTTCATTTTGTATCGTTTCAAGCACCGACAGCAATTTGATTTCCAGCTTTTCTCATTTCACGTATCTACGCCTGGGGAGATACTCAAGCAGACGGGAAGTGTTGAATGATATTGCGCACTtcataaattacattatatactaggatttgaaatcatttttatttgcatgGGTGTGTGACTGTGGTCTTCTTGTATTAACCACGTGAGGATTTATTCCGAGGATGTGCGGCCGAAACCGAGATAGCGAATGAGTAATGGCGCAATGCCGGCCCATGCTGACCAATTTACTCTGCACTGCTGTGGAATGATGGCTGACAGAACATAGCCACAGCTCTACCTTGATAAGATTTCAGTCTAATATAAACCTCCTGGGCCTAAACTAACATGATGCGCTAGCACTGGACTCCTTGCATTCAGCGTTATGATGAATATTTGTCTTGTCAGTTATCTGCCTTCTTGGCAGTGTGTCAGTATACAGCCCTGGATAGGAGTGATTAAAGATTTAGCAATTATCATGATGTGAAATTTTAATCTATGGCTATTTCACAGGATGGCTCTTCAGAAATCAGTTGTTCTCATGTTGTGATTGTTCCATGCAATAAAGCGAGACATGTAAC
>XM_034314531.1
GCGATGGTTTGGTCCAACGGGAGCGCGAGCGGCTGCTGCGGATCCCCGGGGTATGTCTCGGACACCGGAGCGGCTCGCGACTCCCAGCTCAGCCTGAGCCCGACCGGACACTCGGTGGTGGCTGCGTGCCTCGGGCTCATCTCCACCTTCGGCTTTGTGAACAATCTGCTGGCGCTGGTGCTGTTCGGCCGCCACAAGGCGCTGCGCTCTCCCATCAACCTGCTGCTCATAAACATCTCACTGAGCGACATGCTCGTGTGCGCGCTGGCCACGCCGTTCAGCCTCGCCGCCAGCACGCGCGGACGCTGGCTTGCGGGACGCACCGCATGCGTGTGGTACGGCTTCGCCAATTCGCTCTTCGGCATTGTGTCACTCATCTCCCTGGCTGTGCTTTCCTATGAGCGCTACTGTACCATGACGTGTCCTGCCGAGCCTGACGTCACCAACTACAGGAAAGTTGCATTGGGAGTTGTGCTGTCCTGGGTCTACTCCCTCATCTGGACTCTGCCTCCGTTCTTTGGTTGGAGTCGCTACGGACCCGAGGGGCCCGGAACTACCTGCTCGGTGGACTGGACTGCCAAGACGGCCAACAACATCTCCTACATCATCTGCCTCTTTATCTTCTGCCTCATCCTCCCATTCCTCGTCATTGTGTACTCTTATGGGAAGCTGCTGCATGCTATCAGACAGGTGAGTGGCTTGAAGACTTCCACTGGCCGGAAGCGGGAGCACCGCGTCCTCCTCATGGTCATCACTATGGTGGTGTGTTACCTGCTCTGCTGGCTCCCGTATGGCATCATGGCACTGCTGGCTACGTTCGGAGCGCCAGGTCTGGTGACAGCCGAGGCTAGCATCGTGCCCTCGCTCCTGGCCAAGACCAGCACCGTCATCAACCCCGTCATCTACGTCTTCATGAACAAGCAGACTCTGTTCTGTGTTTTCTAGGCTTTAAGACATCGTCTTTATATTAGAAAACAACACTTCATTTTGTATCGTTTCAAGCACCGAC

Function

symbol description
tmtopsa Predicted to enable photoreceptor activity. Predicted to act upstream of or within several processes, including phototransduction; protein-chromophore linkage; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946159.2 True 3505 mRNA 0.44 4 18073134 18104805
XM_034314530.1 False 1576 mRNA 0.52 4 18084419 18104805
XM_034314531.1 False 1009 mRNA 0.58 4 18085007 18104805

Neighbor

gene id symbol gene type direction distance location
LOC113546406 LOC108280815 coding downstream 108840 17910395 ~ 17964294 (-)
mkxb mkx coding downstream 182279 17877343 ~ 17890855 (-)
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding downstream 231949 17785947 ~ 17841185 (-)
gata6 gata6 coding downstream 319169 17746619 ~ 17753965 (-)
cables1 cables1,LOC107681774 coding downstream 372267 17673134 ~ 17700867 (-)
tnk2b tnk2 coding upstream 27151 18131956 ~ 18185148 (-)
LOC113546402 LOC108280489 coding upstream 81103 18185908 ~ 18194006 (-)
LOC113546400 LOC108280488 coding upstream 90114 18194919 ~ 18211462 (-)
dlg1l dlg1l,LOC108280564,LOC108440872,LOC105899217 coding upstream 125149 18229954 ~ 18314989 (-)
ptmab NA coding upstream 235218 18340023 ~ 18343844 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding downstream 80266 17990764 ~ 17992868 (-)
G322250 NA non-coding downstream 219297 17852633 ~ 17853837 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding downstream 222762 17849152 ~ 17850372 (-)
G322072 fuz non-coding downstream 591749 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 683215 17359788 ~ 17389919 (-)
LOC113546439 NA non-coding upstream 239241 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 321928 18426733 ~ 18427069 (-)
G322551 NA non-coding upstream 324854 18429659 ~ 18430003 (-)
G322552 NA non-coding upstream 325330 18430135 ~ 18432743 (-)
LOC117599933 NA non-coding upstream 369419 18474224 ~ 18485480 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 201026 17853847 ~ 17872108 (-)
G322080 NA other downstream 572302 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1099364 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1485318 16564708 ~ 16587816 (-)
G321462 NA other downstream 1706130 16357574 ~ 16367004 (-)
G322538 NA other upstream 289444 18394249 ~ 18394823 (-)
G322826 NA other upstream 648967 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 880368 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 898434 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 970195 19075000 ~ 19077917 (-)

Expression


Co-expression Network