ptprfb (ptprfb,LOC108280478)


Basic Information

Item Value
gene id ptprfb
gene name ptprfb,LOC108280478
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19512722 ~ 19668895 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946177.2
CTCTCCACAGTGTGAAGAAGCTTTGTCCTCAGAAGGGACTGTTTTCAGAAAGAGCAGCGGATTTCAGAGGAGACGTTTCTTTAACGTTTATTAAAgcgagaaggaaaaaaaaaggtgttgcTCACGAGGTTTTAATGGATTAAGAAACTTTTTTTGTGGACATTTTTGTGGAATTTAACGAGGATTTCTTTACCTGGATGTAAAAACGTGAAAGGATTTTAACGTGTGGACATCGTGCGCACTTTTCAGGAATACTTTTAAAAAGACAGTTCCGGATTAAGGAttacatttttgacattttttacagttttccaGTCTTTCTTTCAGTTCGAGGATATGGGTTTTAGCCTATGATTGCGTAAGAGCGAGGAAGGAAAGAGCGGCattgaggaggaggaggaggaggaggaggaagaagaagaagaagaagtgccAACCTGGAACATGGTGCCTCATATTTGCCCCTCAGTGCCCTTGACGCCTCGCTGGCTTTCTGTCCTGCTTCTGCTCGGCTGCACGGCCTTTCCCTCCCACGCCGACAGTTTGCCGAGTTTCATCAAGTCGCCGGAGGACCAGACGGGGATTTCGGGTGGCGTGGCGTCTTTCGTGTGCCAGGCGATCGGCGAACCCAAACCTCGTATCACGTGGATGAAAAAGGGGAAGAAAGTCAGCTCTCAGCGCTTCGAGgtgaTCGAGTTTGATGATGGCTCGGGCTCCGTCCTGCGTATCCAGCCCCTGCGCACGCACCGAGACGAGGCCATTTACGAGTGTACGGCCACCAACAGCGCCGGAGAAATCAACACCAGCGCCAAGCTCACCGTGCTGGAAGagaaTCAGATTCCTCCCGGTTTCCCGAGCATCGATATGGGTCCTCAGCTCAAAGTGGTGGAGCGAACACGGACCGCTACCATGCTCTGTGCCGCTAGCGGGAACCCCGATCCGGAAATTTCCTGGTTTAAGGACTTCCTTCCCGTCGACATCAACAGCAGCAATGGACGGATAAAGCAGCTTCGCTCAGGCGGCTCACCGATCCGAGgaGCTCTGCAGATTGAGAACAGTGAAGAGTCGGACCAGGGAAAATACGAGTGTGTGGCGACGAACAGCGCCGGGACGCGTTACTCCGCCCCCGCCAACCTCTACGTCcgagTACGGCGGGTGCCGCCTCGTTTCTCCATCCCGCCCAGTGATCAGGAGGTGATGCCAGGGGGCAGCACTAATCTCACCTGCGTTGCCGTCGGAGCCCCGATGCCCTACGTCAAGTGGATGACTGGAGAAATAGAGCTCACCAAAGAAGAGGAGATGCCCGTAGGGCGCAACGTTCTGGAGCTTACCAACATCCGCAAGTCGGCTAACTACACCTGCGTGGCCATGTCTTCTCTGGGAATGATCGAAGCCACGGCACAAGttacagtcaaagCTCTCCCCAAACCGCCTACGTCTCTGACTGTAACTGAAACGACGGCCACCAGCGTCACCCTGACGTGGGATTCCGGGAATCCGGAACCCGTCTCCTACTACATGATCCAATATCGCTCCAAAGCCTCCGACAGCAGCTACCAGGAAGTGGACGGCGTTGCCACGACGCGCTACAGCATCGGAGGGTTGAGCCCGTACTCGGAGTACGAGTTCCGCGTCATGGCGGTGAACAACATCGGCCGCGGTCCACCGAGCGACGCCGTAGAGACTCGCACCAGCGAACAGGCGCCTTCGTCTCCTCCGCTGCACGTGCAGGCACGCATGCTGAGCTCTAGCACCATGCTGGTGCAGTGGGAACCTCCGGAGGAACCCAACGGGCAGATCCGCGGATATCGTATCTATTACACTACGGATCCGGATGCGCAGCTCAGCGCCTGGCTGAAGCACAACACCGACGACAGCCGACTGACCACAATCTCTGGATTAATCACTAATGTCACGTACAGTCTCCGCGTCCTGGGCTTCACTTCTGTAGGAGACGGACCTCCATCTGACATCCTGCAGGTCAAAACTCAACAAGGAGTCCCGGCACAGCCTTCTGGATTTGAGGCCGAAGTCGAACCCGACGCCAGGATTGTGCTTAAGTGGCTTTGGCCTGTTCAAGAGCCGATCACTTTGTACGAGCTGCATTACTGGGAGTCTGGATCAGACAATAAGATTCGTGTCACCTTCATCCCGGCTGGGTCATACGCCGTGGAAGGCCTGAAGCCAGACACTCTGTATAAGTTCTCCCTCGCTGCGCGCTCCGAAATGGGCCTGGGGGTCTTCACCAAGCCCATCGAAGCCAGGACCGCTCAGTCCACACCTTCAGCTCCACCTCAGGACGTTCAGGTTCTCAGTCTGAGCTCCACCAGCATTAAGGTGAGTTGGGTCCCGCCTCCTGCTGCCAGCAGGCACGGCGCTATCGTTCGCTACACCGTGAGCTACCAGGCGGTGAACGGCGAAGACACCGAGCGGCACGAAGTGACAGATATTGGAGCGGACGCCACCAGCGTTGTACTAGAGGGGTTGGGGAAGTGGACGGAGTATGTGGTGCGTGTGAGGGCTCACACTGACGTGGGGCCCGGGCCTGAGAGTGCTCCAGTACGCATCCGAACCAACGAGGATGTGCCTGGAGCTCCTCCTCGTAAGTTGGAGGTTGAAGCTATAAACTCGACGGCTATCCGTGTGACGTGGAAGCCACCGCTCTCGGGAAAACAGCACGGTCAGATCCGAGGATATCAGGTGATTTACTCTCGGCTGGAGAACGGAGAACCACGAGGGCATCCGAACATCATGGACGTAGCGCTGCCTGAAGCCCAGTGGAACATTGAGGACACCACCGAATATGAAGCCATCATCTCTGGCCTGATCTCGGAGACGTCGTACTCGGTTACGGTAGCGGCGTACACCACCAGAGGAGACGGAGCGCGGAGCAAAGCCAAGGTCATCAAAACCACAGGAGCAGTTCCTGGCAAGCCCAGCATGCTCATTAGCATCACAGTGGGCAACACCGCCCTCATCCAGTGGCAGCCTCCGAAGGACATGCCGGGCGAGCTGATTGGCTATCGTCTACGCTACAAGCGTGCGGATGAGGAATCGTTCACAGTGCATAACTTCGGGAGCACGGATGACCACTACACGGCGACGGGTCTCTTCAAGGGCGCCACCTACAGCTTCCACTTGAGCGCCAAGAACCGTGCAGGCACCGGAGAAGAGTTTGTCAAGAACATCAGCACGCAGGAGGAAGTTCCCAGCGGATTCCCGCTGAACCTGAGCGTGGTGGGACTGACCACCACAACCACCCGGCTTACATGGGCGCCACCGGCCCCGGCGGAGCGGAACGGACGGATCACTCATTACGTCGTCGTTTACAGAGATATCAACAGCCAGCAGAACAGCACCAATCGTACGTCGGACACACACATGACGCTGCATGACCTCCGACCTGACACCACCTACGACATCCGCATCCAGGCTTTCACCACCAAGGGGGGCGGACCCATGAGCCCCAGCATCCAGAGCAGGACCATGGCCACGTCGCCAGCTTTCGCAACGAGTTTTGGTGTCAAAGCCGTAATGAAGACGTCTGTCCTTCTGACCTGGGAGCTTCCAGAGAACTTCAAGTCTCAAGGGCTTTTTAAGATTTTGTACAATCAGCAGAGCGTGGAGGTTCAGGGCAACATGAAGAGGAAGCTGATCACAGGCCTGAAGCCCGACACTAATTACTCGTTCGTGTTAATGAGTCGAGGGAACAGCGCCGGCGGACTGCAGCAGCAGGTCTCCATCCGAACTGCGCCGGATCTCCTCAAAACCAAACCCGTCCTCTTCAAAACCGACGAGAACAACGGAGGAAAAATCACCATCAACCTTCCCAAAGTGGCGACTACAGCACCGATCAGttggtATTACATCGTGGTCGTGCCGGGATCGCTGACATCATCACGCAGGTGGGAAAATCCGGATGAAATGGAGCTTGATGAGCTTCTCGAGGTCGGCAAAGGTTCTCCGCCGAGGCACCGGCGTCGTCGGCGGTACACTGAAATTCCGAGAGCGTACATCGCCGCCAAGCTGGAATACCTTCCCGAGACGTTCACGCTCGGAGATGAGCAAAACTACAACGGCTTCTACAACCGCCCGGTGCCTAGCAACCAGCCGTACCAGTGCTTCGTCATGGCCGAGATGAAGGAGCAGCACCTTTCCAGCGCCAACGAGAAGCAGCGCGTTTTCTCCTCCAGCCCGTACTCGGACCCGGTGATGGTGGAGAGCGGCAGCGTGGCTCGCAGCGTGGATTCTCCTGAGATGTTGTGGGTGATGGGGCCGGTCCTCGCCGTGGTGCTCATCGTCAGCATCGTCATCGCCATCATCCTCTTCAAAAGCAAGCAGGAGAGGAAGCGAGCGTCTCCGTTGCCTAAAGACGAACACTTGAGCGGGGTGAAGGACTCCCTCCTGGCTAACTCGTCCGATCCCGTGGAAATGAGGAGAATCAACTATCAGACGCcaggAATGAGAGAACATCCTCCCAtctctgtgtgtgagctggCAGACCACATCGAGCGCCTCAAAGCCAACGACAACCTGCGCTTCTCGCAGGAGTACGAGTCCATTGATCCCGGCCAGCAGTTCACCTGGGAGAACTCCAACATGGAGGTGAACAAACCGAAAAACCGCTACGCTAACGTCATCGCCTACGATCACTCCAGAGTCGTGCTGACCTCCGTGGACGGCGTTCCAGGCAGCGACTACATCAACGCGAACTACATCGACGGCTACCGCAAGCAGAACGCCTACATCGCCACGCAGGGCCCTCTGCCCGAGACGCTCAGCGATTTCTGGAGGATGGTGTGGGAGCAGAGGACCAGCACCATCATCATGATGACCAGACTGGAGGAGAAGTCACGGGTGAAGTGCGACCAGTACTGGCCGGTTCGTGGAACGGAAACGTACGGAATGATCCAGGTGACCATGTTGGATACGGTGGAGCTGGCGACGTACAGCGTGCGCACATTTGCACTTtataagAATGGCTCCAGTGAgaagagagaggtgagacagttCCAGTTCATGGCGTGGCCGGATCACGGCGTGCCCGAGTACCCCACGCCCATCCTGGCCTTCCTGCGCAGGGTTAAAGCGTGTAACCCTCCTGACGCCGGGCCCATGGTGGTGCACTGCAGTGCCGGCGTGGGTCGCACCGGCTGCCTCATCGTAATCGACGCCATGCTGGAGCGCATGAAGCACGAGAAGACGGTGGACATTTACGGCCACGTGACGTGCATGCGCTCTCAGAGGAACTACATGGTGCAGACGGAGGATCAGTACATCTTCATCCACGAGGCGCTGCTCGAGGCGGCAACCTGCGGCGTCACCGAGGTTCCGGCAcgaaacctctacacacacatccaaaaaCTGAGCCAGCCGCCGCCCGGGGAGACCGTCAGCGCCATGGAGCTCGAGTttaagaGGCTGGCCAACTCCAAAGCTCACACGTCACGTTTCATCAGCGCCAACCTGCCGTGCAACAAGTTCAAGAACCGACTGGTGAACATCATGCCGTTCGAGTCGAcgcgtgtgtgtctgcagccaatcagaggggTGGAGGGGTCCGACTACATCAACGCCAGCTGCATCGACGgttacagacaGCAGAAAGCGTACATCGCCACTCAGGGTCCTCTGGCCGAGACCACGGAGGATTTCTGGAGGATGCTGTGGGAGCACAACTCCACCATCGTGGTGATGCTGACCAAACTCCGCGAGATGGGACGGgagaAGTGTCATCAGTACTGGCCGGCCGAGCGCTCCGCCCGTTATCAGTACTTCGTGGTCGACCCCATGGCCGAGTACAACATGCCTCAGTACATCCTACGCGAGTTTAAAGTCACCGACGCCAGGGACGGCCAATCGCGGACGATCCGCCAGTTCCAGTTCACCGATTGGCCGGAGCAGGGCGTGCCGAAGACGGGCGAGGGATTCATCGATTTCATTGGCCAAGTGCATAAAACCAAGGAGCAGTTCGGCCAGGACGGACCAATCACTGTGCACTGCagTGCGGGAGTGGGCAGGACCGGAGTGTTCATCACTCTCAGCATCGTTCTGGAGAGGATGAGATATGAAGGAGTGGTGGATTTGTTCCAGACGGTTAAAACTCTGCGCACTCAGAGACCTGCCATGGTGCAGACTGAGGACCAGTACCAGCTGTGTTACCGAGCAGCTCTGGAGTATCTGGGGAGTTTCGACCACTATGCAACGTAACACTGCGGGACTTCAGCTACCgggaacaacaacaaaaaaaaaaaagaaagaaagaaaaacacttcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtcacacacacacacacacacacacacacacaaacatgataCACAACACAGCTTTTTTCCTGACTGACTCACATTCAGATTCAGCAGCTCTGAACTCttaatttttcacacacacacacacacacacacatggcacaACGGCTACtggtagctttttttttttaatcattataaaaattttattctgacttttatttagaatattttgatgtttttattaatcgTTTAACATCTTTGTCGTCTTAACGGCCTCTGCGCCTTTTCCTTTTCCACAAAAAgggtactgttttttttttttttaatttaattttaattgtaattttatttccctttcttgttttattttttttttaggttgtttTAGCACACAGGGCGTGTGATTTTAACACGTACTAATACAAGAGGACCACTGTTCgttctcagagctgctgtcggATTTAATTCATAACACCTtactatttttttcatttcttttatatatgatttgtaatttttttttattattattgttattgttattattattattattcggcGAATCGCAGCGGGTTaactttctgtttctttgtagaaaagaaaatactgagaaaaaaaaaaaaaatcaagagatACGTACAACAGTGACACTAAACACACGCCACGACGGAGCTTCGCACGTGAAGGCGTGCGCCGATATTCGATTTCTTTTTATATCGCGATAATAGTTTTATCACAATGTTATATCAGTGTTGTCTGTAAgaattcaaaaaataaaaaaataaataaaacaaacaaatttacaTCCACTGGTTCCATAACTGCTAATGCTACTCCTGTTGATTGGGCGGAGCTGGGTCATGTGACTAGCCCCTCCTGTGGAATGTTCGTTAACGAGATCCGTGTTAAATATCGTGATATACGGCGTATTGGATTATCGGCGCGCGCCTATACGAGGCGTTCAAATCTATCAAACTAACGATATGTTTTGATCCTGAATCTAATTTCTCATCCAAGTGTACAGTATTAACCACTCCACAAGTGAACtttttatacagaaatatagatatatatataaatataaatataaatatataaatatacacatataaatatgagaaattataaatattattcatatagTATATAAACAGCTACAGATATCTGATCAGTCGTCGATTCTCCGGACGAACGTGATCGGGACGTACcaactacagagagagagagagagagagagactgctggGGGTGAATCTGTATTAATCCTGCGAAAAGTAATATCTACTGTATTaatcctaacacacaccacacacatggttgtgtctgagtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgttctctctgaTGAAGCACAGCGGAGGCCTGATTATAACCACACACTACGTTGGCCAAAAGTTTCCTTTTTACCTTGTGAATGGTTCGTGCTGTAGGGGTTTAAATCTGTTGTATACGCACTCTGTTTTCTATTCgttattaagaagaagaagaagaagaagaagaaaaaaaaactggaattcAAAAACTTGATGTTAATAAAGTTGAATAATTGTtttggggaa

Function

symbol description
ptprfb Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within sensory neuron axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver and nervous system. Human ortholog(s) of this gene implicated in hyperinsulinism. Orthologous to human PTPRF (protein tyrosine phosphatase receptor type F).

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase F isoform X1

GO:

id name namespace
GO:0097374 sensory neuron axon guidance biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05695 PTPRF, LAR; receptor-type tyrosine-protein phosphatase F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946177.2 True 7877 mRNA 0.52 37 19512722 19668895

Neighbor

gene id symbol gene type direction distance location
st3gal3b LOC108280530 coding downstream 56307 19393253 ~ 19456415 (-)
LOC113546452 LOC108280527 coding downstream 128405 19364746 ~ 19384317 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding downstream 181853 19316638 ~ 19330869 (-)
nsun4 nsun4 coding downstream 199048 19310150 ~ 19313674 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding downstream 283126 19226750 ~ 19229596 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 240214 19909109 ~ 19985267 (-)
tmem275 LOC108280259 coding upstream 437077 20105972 ~ 20110891 (-)
kncn kncn,LOC107700491,LOC107710543 coding upstream 442475 20111370 ~ 20121708 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107700550,LOC107563294,LOC107710546,LOC107677877 coding upstream 482122 20151017 ~ 20157238 (-)
zfyve9a zfyve9,LOC108280307 coding upstream 517143 20186038 ~ 20211147 (-)
G323308 NA non-coding downstream 18992 19438223 ~ 19493730 (-)
G323303 NA non-coding downstream 121365 19391157 ~ 19391357 (-)
G323298 NA non-coding downstream 126290 19386231 ~ 19386432 (-)
G323092 NA non-coding downstream 197252 19314511 ~ 19315470 (-)
LOC117599938 NA non-coding downstream 237326 19230354 ~ 19275396 (-)
LOC117599987 NA non-coding upstream 141573 19810468 ~ 19814211 (-)
LOC117599996 NA non-coding upstream 146319 19815214 ~ 19817065 (-)
G323706 NA non-coding upstream 452875 20121770 ~ 20180561 (-)
G323709 NA non-coding upstream 460358 20129253 ~ 20185132 (-)
LOC117599978 NA non-coding upstream 701669 20370564 ~ 20376314 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 5525 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 434805 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 506343 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 518086 18985173 ~ 18994636 (-)
G322826 NA other downstream 757129 18753772 ~ 18755593 (-)
G323726 NA other upstream 526399 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 715306 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 793120 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 997396 20666291 ~ 20714017 (-)
G323902 NA other upstream 1159131 20828026 ~ 20830104 (-)

Expression


Co-expression Network