cul1a (LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526)


Basic Information

Item Value
gene id cul1a
gene name LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17295164 ~ 17311204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946203.2
TTGGGATCCGACGCCATTTTGCTTCTCGATGTAACCGCAGTTGTAGCTTTGTTAGCGAAAATTGGACTGCGTTACACGGGAGTCTGGGTTGGACgggtgattttttttggatttaCAAATTGGAAAATTATTCGAAAAGTGGGAATAAATTGTAGTTTTGTCCTCCTTTCATGTGTTCGTGATCTGAAGATAGAGAAACGCGCGGTGCTGGACAATGGTTTCTTTCTTTACTCTTACTTAAGTGTCCCCTACGGTCGCTGGGCGCTCTGCCTCCACGGTCCGAGGCCTTGTCTTTTCCTCCACATTGTCGCCGCTGTCCGCCGCGCCCTATGGAGGACTAGCTGGGCGCCGCCTCATTGAGCCAAGGGACACGAAGAGCCAAACACCAGGAAGAGATTCCGACACACAGCAGCAGGGAAGACGGGGCGAGGACCTAGGATGTCGTCTACCAGGAGCCAGAACCCTCATGGACTCAAACAGATTGGGCTGGACCAGATCTGGGATGACCTGCGAGCGGGCATTCAGCAGGTGTACACACGCCAGAGCATGGCCAAATCTCGCTACATGGAGCTCTACACTCACGTGTATAATTATTGCACCAGCGTGCACCAGTCAAACCAGGCCCGCGGGCCGGGCATCCCCCAATCCAAACCTTCCAAGAAGGCACCCACTCCAGGAGGAGCCCAGTTTGTGGGCCTTGAGCTCTACAAGAGACTAAAGGAGTTCCTGAAGAATTACCTTACTAACTTACTAAAGGATGGAGAGGACTTAATGGACGAGAGCGTTCTGAAGTTCTACACGCAGCAGTGGGAAGATTACCGGTTCTCCAGCAAAGTGCTCAATGGTATCTGTGCCTACCTCAACCGCCACTGGGTGCGGCGCGAATGTGACGAAGGCCGCAAGGGGATCTACGAAATCTACTCGctGGCCTTGGTGACCTGGAGAGAATGCCTGTTTCGGCCTCTGAATAAGCAGGTTACAAATGCAGTATTGAAGCTTATTGAGAAGGAGCGAAACGGAGAGACCATCAACACCAGACTTATCAGTGGCGTAGTTCAGTCCTACGTTGAGCTGGGCCTGAACGAGGACGATGCCTTCGCCAAAGGCCCCACTCTATCCGTCTATAAGGAATACTTTGAGACTCAGTTCCTGGCCGACACTGAGCGCTTCTACACGAGGGAAAGCACAGAATTCCTGCAGCAGAACCCGGTCACTGAGTACATGAAAAAGGCAGAAGCACGTTTGTTGGAAGAGCAGAGGAGGGTACAGGTCTACCTCCATGAAAGCACGCAGGATGAGCTGGCCAGGAAATGTGAGCAGGTTCTCATTGAAAAGCATCTGGAGATCTTTCACACAGAGTTCCAAAATCTTCTGGATGCAGACAAGAACGAAGATCTTGGCCGGATGTACAACTTAGTGTCTCGGATCACGGACGGTTTGGGAGAGCTCAAGAAGCTTCTAGAAACGCACATCTACAACCAAGGCCTAGCTGCTATTGAGAAATGTGGGGAAGCTGCTCTTAATGACCCCAAAATGTATGTCCAGACTATTTTGGATGTCCATAAGAAGTACAATGCATTGGTGATGTCTGCGTTTAACAACGATGCTGGCTTTGTTGCTGCACTGGATAAGGCCTGTGGGCGCTTCATCAACAACAACGCCGTTACCAAGATGGTCCAGTCGTCCAGCAAATCTCCTGAACTTCTGGCTCGATACTGTGACTCTCTGCTTAAGAAAAGCTCCAAGAACCCGGAGGAGGCAGAGCTTGAAGATACTCTAAATCAAGTGATGGTGGTGTTTAAGTACATTGAGGATAAAGACGTGTTCCAGAAGTTTTATGCGAAAATGCTGGCCAAGCGCCTGGTCCACCAGAACAGCGCCAGCGACGATGCCGAGGCCAGCATGATCTCCAAACTGAAGCAAGCCTGCGGCTTTGAGTACACGTCCAAGCTGCAGCGCATGTTCCAGGACATCGGTGTCAGCAAAGACCTAAACGAGCAGTTCAAGAAACACCTCACTAACTCGGAGCCTTTAGACTTGGACTTCAGTATCCAGGTGCTGAGCTCTGGTTCTTGGCCTTTCCAGCAATCCTGCACTTTTGCACTGCCTTCTgagttgGAGAGGAGCTACCAAAGGTTCACAGCCTTCTACGCCAGCAGACACAGTGGCCGCAAACTCACCTGGCTCTACCACCTGTCCAAAGGAGAGCTGGTCACCAACTGCTTCAAGAACAGATATACCCTGCAGgcTTCCACGTTTCAGATGGCCATTCTCCTACAGTACAACACAGAGGACGTGTACACAGTCCAGCAGTTGACTGACAGCACGCAAATCAAAATAgaCATTTTGGTGCAGGTTCTACAAATTTTGTTAAAGTCCAAATTGCTGGTCCTGGAGGATGAGAACGCTAATGTGGACGAGGTCGAGTTTAAACCAGACACGCTCATAAAACTCTACCTGGGTTATAAGAATAAAAAGCTGCGGGTGAACATCAACGTGCCAATGAAGACGGAGCAGAAACAAGAGCAGGAAACCACTCACAAAAACATTGAGGAAGATCGAAAGCTCTTAATACAGGCCGCCATAGTGCGCATCATGAAGATGAGGAAGATGCTGAAGCACCAGCAGCTCCTGGCTGAGGTCCTTAACCAGCTCTCCTCCAGGTTCAAGCCCAGAGTCCCTGTCATCAAGAAATGCATCGACATTCTCATAGAGAAGGAGTACTTGGAGAGAGTGGACGGAGAGAAGGACACTTACAGCTACCTGGCttaaccattttcttttcattcgcCCCCTCTTCATCTTCCCCCCTccgtctctcttgctctcttttaaTTTGTCCCTaatgtaataaacatcattCCTTTTGACGTTCAGCCTATGTCGTTGGGAATGTGTGAACggaggaggatttttttttattttatttaaaactgcaaAGAAGAAAGACGAGCGGAAAAGAACCGCGTGTGTTAACGTGTGTGTATCATCGTAGCCGGAGTCTGCTGAGCTGGACTTCCCTTTAAAACACCCCGAGCGTGTTGGAGTGTCTTGCTTCACCCGAACTGGCTCAGGATGGACAGACTtcattattgtaaataaaccCGGACATTTAATCTGATGAAAATCAATCTATTACTGAAAAACCCAACCTGCTACGGTTTGCATGCAAACTGCCTATGTGCATTTAAACTAAAGTCATAAaggataaacaaaaaaaactgaaaagtaaCACATTATTAGATGATTTAAGAATACTACCGCATAGTGTTTGCGGTAATATGGCCAGAAAGTTATgttttaacaaaggaaaaattTTAGCAACACATCCCAAGGAAAGCAGTGCGTGTTTGACCCGGTCCTTAGGCGTGTCCTCGGCATCGTTTCCTGTTATCAAATATATCATTTGTATAGTGTGgttcacttttttaaatgtgtggtaaataaaaattaaaggttTCTGTA

Function

NR:

description
cullin-1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K03347 CUL1, CDC53; cullin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946203.2 True 3465 mRNA 0.48 21 17295164 17311204

Neighbor

gene id symbol gene type direction distance location
cntnap2b cntnap2b,LOC108280767,LOC108433079,LOC107713665,LOC107757823,LOC107599243,LOC107663527,LOC107656139 coding upstream 1998 17238926 ~ 17293166 (+)
xcr1b.2 NA coding upstream 213506 17075730 ~ 17081658 (+)
xcr1b.1 NA coding upstream 223207 17066201 ~ 17071957 (+)
ghrhra LOC108280336,LOC108433063 coding upstream 304052 16975923 ~ 16991112 (+)
LOC117599965 LOC108280683 coding upstream 338604 16952977 ~ 16956560 (+)
mcm6l mcm6l,LOC108280894,LOC108433082,LOC107656140,LOC107713663,LOC107757789 coding downstream 1878 17313082 ~ 17321037 (+)
ahrrb LOC108280895 coding downstream 12707 17323911 ~ 17347484 (+)
exoc3 exoc3,LOC107757821,LOC107656144,LOC107713660 coding downstream 37706 17348910 ~ 17361297 (+)
si:ch211-106n13.3 LOC108280813,LOC108433067 coding downstream 89187 17400391 ~ 17427264 (+)
ccr12a LOC108280814 coding downstream 116706 17427910 ~ 17429725 (+)
G321704 LOC108410862 non-coding upstream 334430 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 402140 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 435586 16792714 ~ 16859578 (+)
G321585 NA non-coding upstream 505557 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 522715 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 214367 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 320010 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 410734 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 543344 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 763125 18074329 ~ 18074748 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 435482 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 501466 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 506196 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 546824 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 1162800 16131335 ~ 16132364 (+)
fuz fuz other downstream 167630 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 259445 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 277868 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 914717 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1082819 18394023 ~ 18430022 (+)

Expression


Co-expression Network