nsun4 (nsun4)


Basic Information

Item Value
gene id nsun4
gene name nsun4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19310150 ~ 19313674 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946204.2
aaaacactttagagGATCCATGTAGTTTGAATGATAAATAGTAGTAATTCTAAAATGTCTTAAAAGtactaaaatgtcatttttatcgTCAAACATGTTATTTCTAGGATGTTCGGGTGGTGGGACTGGTGTTCGAATGACTAACGGAAccaataacacattttattgtgAGTCGCGGACGCTTTTAGGAGTTACACATAAAATGGCGGCGCACATGAAAACGAGATTTTTGATAAACAAGTTCAAAGACTCGGTTTGTTTTATCCAGCGACGGAATCGCGTTAAAACGAAATGGGCCAGCACCAGAGCCAAATTCCCAGCGACTAACCTGGCTCTGCAGCATTTCGATGCCACGTATAAGAACTACTTTGGGGAGCTGTGGCCGTCTGTCCGTATGGGGATGTTGTCAGAGCAGAAGTACGGAGCCCTGATGAACAACTTCGCCTCTAACGCAGACGTGATCTCGACTTTACAATCGCAAGGCTGCAGAGACTTCatcagagatggagaaagagacacTCATAAGATTTCAGATGAATCTGAACAAAATGATCTTCCTTCTGCAGAAACAGCTCGTATTAGCTCACATATCCAGTGTTTTGTCTTTCCGAGAGGAGACATAACTCGATTCAAACCTGCCAGACCAGACAGCACAGGATTGCTGAGTTATTATCTCCTGGACGCGGCTTCTGTCCTGCCCGTGTTGGCGCTGGACATCCGGCCGGGTCAGACCGTTCTGGACCTCTGCGCCGGCCCGGGAGGGAAGACGCTCGCTATCCTGCAGACACAAGCTGCCCGGTTTCTGTGGGCCAACGACTTGTCTGGGTCTCGCACGGCCCGGCTACAGAGGACGCTCCAGAGCTACGTGCCCAAAGAGCTGAGAGGCGAGGACAAGCTCCGCATCACGTCTCTCGATGGCCGCAAATGGAGGAATATGGAAGATCACAAATTTGACAGAGTGCTAGTGGACGTCCCCTGTACCACAGACAGACATTCCCTAATGGAGGACGAGAACAACATCTTTAAAAGGTCCAGGACTAAAGAGAGACAGACGCTTCCCTTACTGCAGATCGAACTCCTGCTGGCGGGGCTCCAGGCGACTCGTCCGGGCGGAGAGCTGCTCTACTCCACCTGCTCTCTGTCTCAGCTGCAGAACGagtgtgtggtgcagcaggcGGTCAGTCTCGCTCAGCAGGAGATGGACATCACGGTGCAAGTGCAGGACCTCAGCGGCTTCACGCGCCTCTTCTCGGACACGTTCCACTTCGCCCCTCAGCCGGCGCTCGGAGAACTCGTCCTGCCGCACTTGTGCGCAAACTTCGGGCCGATTTATTTGTGCAAACTGCTGCGTGTCAGCTGAAGAGGCCCGGAGTCAGGTTTATGCGACTTCACGACTTCAGCTGTGTGTAAACGACTCACTGAAACACTGCCCTCTGGTGGAGatattaaaaagtgtttttagtAACTAAA

Function

symbol description
nsun4 Predicted to enable methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human NSUN4 (NOP2/Sun RNA methyltransferase 4).

NR:

description
5-methylcytosine rRNA methyltransferase NSUN4

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946204.2 True 1470 mRNA 0.51 6 19310150 19313674

Neighbor

gene id symbol gene type direction distance location
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding downstream 80554 19226750 ~ 19229596 (-)
LOC113546473 NA coding downstream 112656 19190314 ~ 19197494 (-)
dipk1aa LOC108280758,LOC108436064 coding downstream 218461 19078723 ~ 19091689 (-)
gfi1aa LOC108280759 coding downstream 257008 19043896 ~ 19053142 (-)
glmna glmn coding downstream 282267 19016482 ~ 19027883 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding upstream 2964 19316638 ~ 19330869 (-)
LOC113546452 LOC108280527 coding upstream 51072 19364746 ~ 19384317 (-)
st3gal3b LOC108280530 coding upstream 79579 19393253 ~ 19456415 (-)
ptprfb ptprfb,LOC108280478 coding upstream 199048 19512722 ~ 19668895 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 595435 19909109 ~ 19985267 (-)
LOC117599938 NA non-coding downstream 34754 19230354 ~ 19275396 (-)
G323088 NA non-coding downstream 89932 19217843 ~ 19220218 (-)
LOC117600001 NA non-coding downstream 105770 19198060 ~ 19204380 (-)
G323007 NA non-coding downstream 243402 19055487 ~ 19066748 (-)
G322889 NA non-coding downstream 353533 18942578 ~ 18956617 (-)
G323092 NA non-coding upstream 837 19314511 ~ 19315470 (-)
G323298 NA non-coding upstream 72557 19386231 ~ 19386432 (-)
G323303 NA non-coding upstream 77483 19391157 ~ 19391357 (-)
G323308 NA non-coding upstream 124549 19438223 ~ 19493730 (-)
G323327 NA non-coding upstream 288435 19602109 ~ 19602336 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 232233 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 303771 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 315514 18985173 ~ 18994636 (-)
G322826 NA other downstream 554557 18753772 ~ 18755593 (-)
G322538 NA other downstream 915327 18394249 ~ 18394823 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 162438 19476112 ~ 19507197 (-)
G323726 NA other upstream 881620 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 1070527 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 1148341 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 1352617 20666291 ~ 20714017 (-)

Expression


Co-expression Network