hecw1b (hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981)


Basic Information

Item Value
gene id hecw1b
gene name hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17433918 ~ 17477821 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946214.2
GAGGAGGATGTAGCATCCCTCCATCAGCGCATTAGCACAGGAGGCTAGCGCGGTGCTGAGCGGCCGCTTTTGTGGGATGTGTGACAGTTTAACGGAGTAACATGGCCTCCAGAGACTGAGGAGCTCTGCTTTCGGAGCATGATTCACCGCCAGGTGATACTGACTCAGAACTTGTACCAGAACCGCTTTCTCGGGCTGGCGGCCATGGCCTCACCGTCTCGCTCGTCCCAGGCCCGGCGCCGGAGCAAAGACCCTATCCGGCACAGCTTCAACCCGGAGCACTTCCCCAGTGTGGACTTCCAGAACGGCGAGCATGAGGAGCTGGCAGCCGCCCTGCCGCGTTCCACCAGCGATACGGACCTGGTGACATCACACTGTCGCTCCACACTGACCGCCAGCACCTCAAACTACGCCATCGGCCAGTCTCCGGACATCACACTCACATGGGACATCAAGGAAGAGGTGGATGCTGGAGACTGGATTGGAATGTATCTCATCGatGAGGTGCTGTCAGAGAACTTTCTGGACTATAAGAACCGCGGAGTGAATGGCTCTCACAAAGGCCAGATCGTATGGAAGATTGAAGCCAATTCCTACTTTGTTGAGCCTGAGACGAAGATCTGCTTTAAGTACTACCACGGGGTGAGCGGCGCTTTGAGGGCCACAACACCCAGTGTGACCGTGAGGAACCCTTCAGCGCCGGTGTTCAAGCCGGTTGCCGTGGACGACGTGCCTCAGAGTCAGGGCAGCCGAAGACTCATCAGCTTCTCTCTGTCAGATTTCCAGGCGACAGGCTTAAAGAAGGGCATGTTCTTCAACCCAGACCCCTACCTGAAGATCGCCATCCACCCCGGCAAACACAGCATCTTCCCTGCTTTACCTCACCATGGCCAGGAGAAAAGATCAGGCATTGTCTGCAACACCGTCAACCCCGTGTGGCAGAGAGAGAGGTTTAATTTTGTGTCTTTACCCACGGACGTGCTGGAGATTGAGGTAAAGGATAAATTTGCCAAGAGCAGACCCATCATAAAGCGCTTCCTTGGCAAACTGTCCATGCCGGTGCAGAGATTACTGGAGAAGCATGCTATCGGTGACCGAGTGGTCAGCTACAGTTTGGGTAGAAGGTTGCCAACAGAGCATGTCAGTGGTCAGCTGCAGTTTCGCTTTGAGATAACTTCCTCCATTCATCCAGATGATGAGGACATGTCCCTCAGCACAGAGCTTGAGTGTACCACAGTGCATGAGGAACCAGAGGAACCTGAGCAGCATGAGCCAGGGGAAATGGAGGCAGGAGAACATCTTGCTCCAGTCCAAGCCGAGGACACCATGAGCCTGGATCTGGTTGCTCCTGATCTGCCACTGGATGGAGACACAGCCTCAGTAGAAGTTTCCATGGATGTAGAGCCCTTAGAGGCAGATGAGGGAGGGACAGAGATCCAGAAACCAGAGGAGACTGAGCAGATCCAGGAGGCAGAATCTGTACTTGTAGAGAGCAGTGAGCAAGAAGTGGAGGCCCTGGCAGCTGAGCAAGATGGAGGAAGTCAGGTGGAGGTCCTGACGCCTGAGCAAGATGTAGAGAGTGAACAGGAATTGGCAGCTCTGGAGCAGATGGAGCAAGGAGAGACAGGAATAGAAGGAGAAGGATACAATCAAGAGACAATTTCTGTGGAACCAGTTGATATAGAAACTATGGAAAGAACAACAGCAGCCCCTACTGTAATGGTGGAAGAAATGGAGAGTGCCATGGGAGGATCTGAACCTCAACCTGTCTTCCTTGAGGAGTGTGCTCAAGCAGAGGATGAAGATCAGGAAGAAGACGAAGATTGCTCACTCCGGATGCGTGGTGCAGCGAAGCGAAAAAATCGGCCTTGTTCACTGCCCGTGTGTGAGCTGGAGACGGTAATTGCCTCGACATGTGAGGAACCTGAGACTCCACGGTCACACTACATCCGTCTCCACCACCTTCTCCACAGCCTTCcctctaaccaatcagaaagctctaaaacagaagaagaagaggaagaagaggagcaaGACGAAGATGGTGTAGCACCTGAGCCGCTGACTCCCAATGGCCCACGTCGTTCCCTTCCTCGCAGCCGCTCGCACCAGCGCCTCTCAGAACTTGTGCAGATACTAGACGGAGAGGGCCAAGCATTAGAGTCAGAAGGTCAGGTCAGAGGCCAAAGGTCACCAGGTGAGAGTGAGGGTGAGGCTGACCTTAGCCCAGTGCCGTGCTGTAGTCACATGGTGGCGAGGGGTGCGGGCGCAATGCGTGCAGCGTCTTTGGACAGCGCACGATGCACCAAGAGCAGCATGTTCTCCTCACAGGAAGACGAGGACGACATGGACGGGCTGAACGGCATCTTGGAATTAGAGGTGGAGCCTTGTCAGGGGGTGCGGAATCGTATGAGGGACGGAACAGGGTGGGAGGAAGTGCCTGACACTCATGTGCAAAGTCCacatggcattgtgggtaatggaGAGTCCCCAGGAGCTGGGACAAGCAACAGGAgagaGTGTCCTCTGCCATGTAGTCACCCTCCAGTAAGCCAGCTCCCTGCTCTGAGGCCAGACCCCCACCACTACCCCACCATCGACGAGCCCCTTCCTCCTAattggGAGGCGCGTATCGACAGTCATGGACGTGTGTTCTACGTGGATCACATTAACCGCACCACAACGTGGCAAAGACCAACAGCAGCAGCGACGCCTGATGGCTTGCGCAGGTCCGGATCCATCCAGCAAATGGAGCAGCTCAACAGgagATATCAGACCATCCAGAGGACCATGGCCACAGAGAGGAGGGAAGAGGAAGGAGGGAACCCTCGAGTGGAGAGGACTAGCAGTACAGAGACTGACTCACCGCCTCAGACAAGTGagACGAGGAGAGACTCGCACTGCTCTCCGAGTCACTGTCAGAAGGTCACCCTGCTGCTGCAGTGTCCGGCCGTCAAGTTCATCACACACCCCGAGTTCTTCACCGTGCTCCATGCCAACTACGGTGCATATCGCATGTTCACTAACAGCTCGTGTCTGAAGCACATGATCCTGAAGATCAGGAGGGACGCGCGGAACTTCGAGCGCTACCAGCACAACCGTGATCTCGTCTCCTTCCTGAACCGCTTCGCTGATTCCCACATGGATCTGCCCCGGGGCTGGGAGATTAAAACCGACCCTCAGGGAAAGTCGTTCTTTGTGGATCACAACAGCCGTGCAACGACCTTCATCGATCCCAGAATCCCTCTGCAGAACGGCAGGCTGCCCAACCACCTCACTCACCGGCAACACCTGCAGAGACTGCGTAGCTACAGTgcaggagagGCATCCGATGTGTCCCGCACGCGTGGAGTGTCTCTGTTAGCGAGGCCTGGCAATAGTTTAGTAGCCGCCATCCGAAACCAAAGCCAACAGGAGCCGGTGCCACTGGCGTACAACGATAAGATTGTGGCGTTTCTACGGCAACCCAACATCTTTGAGGTGCTCCAAGAGAGGCAGCCGAGCCTGGCCAGGAACCACTCGCTCAAagaaAAGGTACACCACATCCGTACAGAAGGCACACCCAGACTAGAAAAGCTGTCCTGTGATGCCGACTTTGTCATGCTATTAAGTTTGTTTGAGGAGGAGATCATGTCCTACGTTCCTCTCGCCACGTTTCACTCCGGCTTCGCCTTCTCTCCCCGCTGCTCCCCCGGCTCCTCTCCGCAAAATTCTCCAGGAACCCAGAGAGCTCGTGCTCCAGCTCCATATCGCAGAGACTTTGAGGCCAAACTTCGTAACTTCTACAGGAAACTGGAAGCCAAGGGTTATGGACAAGGGCCAGGGAAAATCAAACTAATAGTACGGAGAGATCATCTACTGGAAGGCACGTTTAACCAGGTCATGGCCTACTCACGCAAAGAGCTCCAAAGGAACAAACTCTATATTACCTTTGTCGGCGAGGAAGGtCTGGATTACAGTGGACCTTCTCGGGAGTTCTTCTTCCTGCTCTCTCAGGAACTGTTTAACCCCTATTACGGTCTGTTTGAGTACTCCGCCAACGACACATACACAGTCCAGATCAGCCCCATGTCAGCCTTCGTAGAGAATCATTTGGAATGgttTCGTTTCAGTGGGCGGATCTTAGGCCTAGCATTGATTCATCAGTACCTGCTGGATGCCTTCTTCACCCGGCCCTTTTATAAAGCTCTGCTCAGACTAGCGACTGACTTGAGTGATCTGGAGTATTTGGATGAGGAGTTCCACCAGAGCTTACAGTGGATGAAGGACAACGACATCACAGACGTCCTGGATCTCAACTTCACCGTCAATGAGGAGGTGTTTGGCCAGGTAACAGAGAGGGAGCTGAAATCAGGAGGAGCCAACATACAGGTGACGGAGAAGAACAAGAAAGAGTACATAGAGCGCATGGTGAAGTGGAGAGTGGAGAGAGGAGTGGTTCAGCAAACCCAGGCTCTGGTCCGAGGCTTTTATGAGGTGGTGGATTCTCGACTGGTGTCTGTGTTTGACGCTAGAGAGCTGGAACTGGTCATCGCTGGAACAGCCGAGATCGACCTCAATGACTGGAGGACCAACACAGAATACAGAGGCGgctacCACGACGGACACATCGTGATCCGGTGGTTCTGGGGAGCAGTAGAACGCTTTAACAATGAGCAGAGGTTGCGGCTGCTGCAGTTTGTTACAGGAACGTCCAGCGTGCCATACGAGGGCTTTACGGCTCTGCGTGGAAGCAACGGCCTGCGCCGCTTCTGCATCGAGAAGTGGGGAAAGATCACCTCTCTGCCCagGGCTCACACATGCTTTAACCGCCTTGATCTTCCTCCATACCCGTCCTACACAATGCTCTACGAGAAGCTCCTCATTGCTGTAGAGGAGACCAGCACTTTCGGCCTTGAGTGACATGACGACTCTGCATCGCTCGTGTACGCTACACGTCTAGTACACTACTATAAATGTGGATCTGTTTTTAGTCTATAAAAAAATAGCgatctgtatataaatatatgtatatcttGCTTCTTAACTGAAAACAGCCTTGCATGCATCACTCACCTGTGCACATGACGTACCGTCTCTGGGCAGCACCGTGTGCACCATGCAAGCTGTGTATGCAATATGACACAACAGGCTTTAGCCTAACTCTTAACTCTCAGGGCCTCGACCTCCGCTGCAGCACTACGACTCCAACATGGCTGCAGTGTTCACTTGGGATACACACACTCGACTGACTGCTCGCACCGCATCTCACTCACATCAGCTTCGGCGACGGACTCAGTCAAGGCACGTGAACACTTCCTTCCAAAATGGCGTCATTACAGAGATGAGCActaatattagaatattagaagcaacacaggaaatgacatcaggaaccagagagagagaagcgtTTGGGCTGTGGAGGCTCGAAAATTCtgatttaaaggaaaactggaaaactccagtgttttttaatctaatctTTATCAACTGCATGAGTagggttgtcatggtaactgtACCATGAACCCATGTATCATTTTATACAGcaacaaagttgattatttattttgttcatttttctgttatcactgttttgtcaattttaaatataataagcCTAATGTGTAGCAAAGTGTGCtgggaaacaaaaaagaaagaaattcactCTGGCATGTAAAAGCCTGTTCCTGCATATTTCTCCACTCCCGAGATGGAGTTCTTTCACGTGGAGATGATTTCTAACTTTTAATGTttcaatcattttcatttttaattttcatatagTTTGTTATATATTCTTgatacttgaaaaaaaaagcttttgttcTTGAATTCACATGGACATGCCATCTATGATGTATTATTTCCTATTACACCACAGCTCtgctgaattctctattctgattggtcggaagagaagatgttgattaattgtcacagctctgacaatagtgccggCTACAATGTTTAAATAGtgactcattcacagggacctgtgTGGCGGACACACTACAATaatataagactaataataagcaaagagtgttgttatttatcaaagaaaaacgTACAGTCGTTCTATAAGAAGACGTTTATTTAccatatatggaaggagtctccagtgtcagtgctttgtaacggtGAGTTTTCCGAAAtgggaaattcttcaggatggaggtcTTTATGGTTTTTGTCaagctttgtgttttttgtcttattaacttaaagagaggctggcgagggaacaaCCGTTTATAGCTTTcataacgtaagcgataacgGAAACTAACTTGTGtcaatgttccacaacattaaatgtaactaaagaTGGTTAAACAAAGTGTCatgcttttattaataaaaaaaattgttaatgattgggaaattgctgtggtataagaggaataaaacactttcaggtaaaaaaaaatattattatcaaTTTTTTAGCTTCccttataaatataattcattaagatttttttcgttttattttttttatcgaACAATTTGCATTTTTCAGAATTCAGaaccaacatgatctttgcaggaaaaTATAGGTGCAAGGTgattaaaaggtaaaaaaaagttgttttggagaaatataCTGCATTTATGGTTTATTAACTTTGAGGGGTCAACACATTCTCAAAAAACTCCATTTTGGTTAAAACCTTTTTggctttttgccttttttttttttcaagaattcATCCACAACAACTTTCAACAGGTTTCCCAGACAAATACATTTCACATAAACCTTTACTGACTTCTATTATGAGTGAAATTGGAGTGAActggtttctgtttttttttttcctcagcacagAGAAGTGTCAAAATTTGTCTGTGgcaaatcaaacacacacacacacacacacacacacacacacacacacacacactgcagacgCAGTAGATGGAAGTTAGGTTagaaaacactggagtattttttacactaaaaaaagaaacatgggTCAAGCAGGTTGTGGTATATAAGCTTAAGCTTaagatttttgttatttataatatttcatttttaatattcttttgtACACTACCCAGAAGGACGTCTGTAAAGATTAGTTTTCAGTGAAACAATTCATTACGTACAGTGTATTCTATGTAATACTGTGTAATTACCCAAATGACTTGTATGATGCTGTAACACTTGTAACACATTTTGTCTGGAGATTGAAGTTCttatttatagaaatgtaaGTGGTGAAGGTCATGGGATTGTCCGGTGAGTCTGGGTTGGTCATGTGATGGTTATGGTGTCTATATTTCAGCTTTTTACCTCTTCTTTCTCGTCATATTTACACGTCTGAGCACGTTTCAGAGGGAGGAGCTCATGTGCTGTAGAGTCACGCTTCATATATTGTATGTAAATTGAAAGATATGATACTGACGGCTTGAAAATCCATGCTATCCAGTGTACAGATATTGGATTTTGAGCAAtctttgtatttgtaaattGAAGTATTCAGACTCTATTACAAAGTAgtatacaaatgaaaaatgctGCAGCACTGAtcaaaaattatgatttttttttaatattattatctcCTATCACGCTCACTCCTGGATATACCAGTGcatttgtatttaatgtgtCAAATGAAACGTTGTATAATTGGATGTACTGTAAATCAAATGTGTATATTATAAgtctatacagtatgtgtaacgTATAGATATCAATTTTGAAATGCAATGTATGTATTAGGGATTAAGAGGCttcttttttaatctattaatctATCTCTTTGCTTAACCTTTTGGTTGTATAAATGCATCATGCTATGCACATTTTAGTTAAACTAACAAGAATGCAATTTCCTGTCAATCGTCCAGGGCTTCTCTTTAATTTCCCAAAGTCTCGGATGTACAGCTGTATGGGATGATTTCATCTCAAACGGATTGATCAAACTGCCTTACAACACCTCCGCTCGAACCATTTCACATTCTGTTGGAGGTGTGAGAAAGTTTTGGCTCCTGCATTATcctcataaacataaacacaaacacacacacacacacacacacactgtcctgcaCGAACAGCTCACTGTGTTGCACTGTGTGTCCATCAGGTCTTCGTCTCAGCCGGTTTTGTATTCTGTAAGGCTCCAGGCTTCTTTGTCAGGCCGAGCTCTGTAAAAAAGCATAGCACTGTTCAAGAATGTCAATaaacaatcagtttgtaa

Function

symbol description
hecw1b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of sodium ion transmembrane transporter activity; and regulation of dendrite morphogenesis. Predicted to be active in cytoplasm. Orthologous to human HECW1 (HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HECW1-like

GO: NA

KEGG:

id description
K12168 HECW2; E3 ubiquitin-protein ligase HECW2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946214.2 True 8201 mRNA 0.47 28 17433918 17477821

Neighbor

gene id symbol gene type direction distance location
ccr12a LOC108280814 coding upstream 4193 17427910 ~ 17429725 (+)
si:ch211-106n13.3 LOC108280813,LOC108433067 coding upstream 6654 17400391 ~ 17427264 (+)
exoc3 exoc3,LOC107757821,LOC107656144,LOC107713660 coding upstream 72621 17348910 ~ 17361297 (+)
ahrrb LOC108280895 coding upstream 86434 17323911 ~ 17347484 (+)
mcm6l mcm6l,LOC108280894,LOC108433082,LOC107656140,LOC107713663,LOC107757789 coding upstream 112881 17313082 ~ 17321037 (+)
gpt2l LOC108280657,LOC108430180,LOC107599855,LOC107708598 coding downstream 9566 17487387 ~ 17507387 (+)
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding downstream 36876 17514697 ~ 17517367 (+)
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding downstream 364628 17842449 ~ 17853870 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding downstream 382490 17860311 ~ 17872029 (+)
wacb LOC108280665 coding downstream 488072 17965893 ~ 17979122 (+)
G321704 LOC108410862 non-coding upstream 473184 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 540894 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 574340 16792714 ~ 16859578 (+)
G321585 NA non-coding upstream 644311 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 661469 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 47750 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 153393 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 244117 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 376727 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 596508 18074329 ~ 18074748 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 574236 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 640220 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 644950 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 685578 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 1301554 16131335 ~ 16132364 (+)
fuz fuz other downstream 1013 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 92828 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 111251 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 748100 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 916202 18394023 ~ 18430022 (+)

Expression


Co-expression Network