wdr33 (wdr33,LOC107653512,LOC107705313)


Basic Information

Item Value
gene id wdr33
gene name wdr33,LOC107653512,LOC107705313
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18490937 ~ 18516265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946217.2
ACAAGACGAAGACTGAGGTGGGGGgaggaaagggggaaaaaaaaggcctCGAAGATGGCGGCCGCGAGTGATTTGCGGTGCATGTTGACAATCTGATTGCACGCTGGGGACGTTTTTGGTATTGTATTTTCGTTAAGAGAATACAGAAGAGTCGTGAATAAAAATAGCTTTATAGACTCAGTCAGCACTGGATATTTTTGCGGTGTAGCTGAAGGTGCACCATCATGGCGACTGACATCGGCTCCCCGCCGCGGTTTTTCCACATGCCTCGGTTCCAGCACCAGGCGCCTCGGCAGCTCTTCTACAAGAGGCCGGACTTTGCGCAGCAGCAGGCCATGCAGCAGCTCACCTTCGACGGCAAGCGCATGAGGAAAGCAGTAAACCGCAAAACAATCGACTACAACCCGTCCGTCATCAGATACCTCGAGAATCGTTTGTGGCAGCGGGATCATCGAGATTTGCGTGCTATCCAACCGGATGCAGGTTGCTTTAATGATCTTGTCCCTCCCGTCGGTATGCTTAATAACCCCATGAACGCCGTCACCACAAAGTTCGTCAGAACATCCACCAATAAAGTGAAATGCCCAGTGTTTGTAGTACGGTGGACCCCTGAAGGCAGGCGACTCGTAACCGGGGCCTCGAGTGGGGAGTTCACGTTGTGGAACGGCCTTACATTTAACTTTGAGACTATTTTACAGGCTCACGACAGCCCGGTGCGAGCAATGACGTGGTCTCACAACGACATGTGGATGCTGACCGCCGACCACGGCGGCTACGTGAAGTACTGGCAGTCCAACATGAACAACGTCAAGATGTTCCAGGCGCACAAGGAGGCGATTAGAGAGGCCAGTTTCTCTCCTACGGATAATAAATTTGCCACTTGCTCTGATGATGGAACTGTGCGCATCTGGGACTTTCTGCGCTGCCATGAAGAAAGAATTCTAAGAGGTCACGGCGCAGACGTTAAGTGTGTCGACTGGCATCCCACCAAAGGCCTGGTGGTCTCAGGCAGCAAAGACAGCCAGCAGCCTATCAAGTTCTGGGATCCAAAAACTGGCCAGAGTCTGGCAACATTACATGCCCATAAAAACACGGTGATGGAAGTGAAGTGGAACCTGAACGGTAACTGGCTGCTGACGGCATCGCGTGACCATTTATGCAAACTGTTCGACATTCGCAACCTGAAAGAAGAGCTGCAGGTGTTCAGGGGACACAAAAAGGAAGCTACAGCTGTTGCCTGGCACCCAATCCATGAGGGTCTTTTTGCGAGTGGAGGCTCTGATGGATCTCTGCTCTTCTGGAATGCAGGGGTGGAGAAGGAGGTGGGTGGTATGGAGATGGCCCATGAGGGTATGATCTGGAGCTTAGCCTGGCATCCTCTTGGCCACATTTTGTGCTCGGGGTCTAATGACCACACCAGCAAATTCTGGACCCGAAATCGACCAGGAGACAAGATGCGCGACCGCTACAACCTGAATCTCCTACCAGGAATGTCGGAGGACGGAGTCGAATATGATGACATGGAGCCCAACAATCTGGCCACCATTCCTGGGATGGGGATCCCGGAGCAGCTGAAAGCAGCCATGGAACAGGAACAAACCAGTAAAGAGACAGTACCGGAGGCTGAGATGAGCATCCCAGGGCTGGACTGGGGAATGGATGAGGTGATGCAAAAGGACCAGAAGAAACCACCAACAAAGAAGGTTCCCTACGCAAAACCAATTCCTGCTCAGTTCCAGCaaGCCTGGGCAGAGAACAAGGTGCCAACTATGGTTCCAGGAGAGCCACCCAAGGAGAGAAAGGATGAGAAGGTGGATGGAAAGAAGAAGACTCAGGCTGAGATTGAGCAGGAGATGGCTGCACTGCAGTACACAAACCCCATGCTGTTAGAGCAACTGAAGATTGAGCGAATGGCCCAACTCCAGGATCAGAGCATGCCACCTCCTGGAGGCCAGCCAGGCAACATGCCATCCTTCCCTGGGCAAGGAGGCCCCATGGCACCGCCTCCACAGGGCTTCCCTCAGTCAATGCCGCCCCAGCAGATGCCTCCCAACATGGGGCCTCCGATGGGACAAGGTGGCATGCCCGGCCCTTATATCCCCCCAGGTCAGATGGGACCTCCAGGGCCTTTGCCTCACCAGGGTCCTCCTCCGCAGGGCATGATGGGACCTCCAGATCTCCACGGACCTCCCCGCCACCCTGGACCTCACAGGAATATGGGGCCTCACGGCATGCCACCAGGGCCTAGGGGCATGCAAGGTCCTCCACCAGGTCCGATGCCTTCAGGACCACCTACAGGAGGCATGATGGGACCTCCACCTCGGGGTCAAGGGCCACCCCAGGGAGGCATGATGCATCAGGACATGCGCGGACCAGCACCTCATGGAAACATGATAGGTGCACAGGGGCCTCCGCCAGGAGGAATGATGGGGCCTCCACCCAGAAATCACGGCATGGGCAACATGCACGGAATGGGGCCTCCTCCTGGAGGAATGCACGGGCCTCCAAACAATATGCAGGGGCCACCGGGTAACATGCAAGGACCTCCTCCGTATATGCAGCAGGGCAAGCCGCCACACATGGGCGAGGGAAACAGAGGACAGTTCAACCAGGGACAGAATTCTGGCCCACAGTCAATGATGCATGGTCCTGGTGCCAAAGACGGACCTCGAGGGCCTCCGAACCACCACATGGGGCCTCCACCTGAGCACCAGGGCTCGGACGGAGGTTCTCAGTACTGGGCGGAGGACGGAGGGTACCAAGAGGGCTGGAGGAGACCGGGACAGGACTTTCACGGAGATCCCAGGGGCCACCGAGGAGGTTCTGGAGGGCAGTGGGAAAACCAGGAGAGGTTCCCTTCTCACGACGATGACTACGAAAGGTTTGATGATGGATATGAGGGTGCAGGGGATGGGTACGAGCAGAGGCCGAGGCGACCACCACATTCAGACGATTCttTCAGGAGAGGTGGAATGAGCGGACGTGGAGGCCGAGGAGGTTACCAGGATGAGTACGGAGGAGACGAGAGCTTTGATTCTCAGGACGAGATGGGCCAGGGCTGGGGGAATGGAGGGAGAGGGAGGCCACGTGGAGGACCACCGCGTGGAGGTGGTGTAGGAAGAAAGGGGCTTCTGCCAACTCCTGATGAGTTTGCGGCTCACTACGAAGGAGGAAGAAACCAAGAGGGTTGGGAGGGAGGGCGAGACTCAGgtcatGAGGGTTATCGGGACAGCCAGAGAGGTGACCATGGCATGCACGACAGCCCGTCTGCAGTCAGTAGAGAGCGATCTTCTTCTCTACAGGGCATGGACATGGCCTCACTTCCACCTCGCAAACGTCCCTGGCACGACGGCCCTGGCACCGGAGACATGGACTCACCCGGAGCTGGACCTGATGACCGAGGGGCAGGTCGGCCTCCATCACGTGATGACGTCGGTTACGGTCCTCCTCCATCCAGGGGCGGTAGAGGAGGATGGGTTCGCGGTGGCCGTGGAATGAGAGGAGGCCGGGGACGGTAGGAGGAGCTACACCCTTAAGACAGCAGGCTGGACACTGTGGATTGAAAAAAGGACCAAAGGAGCCACAAATCTGCTCCATCAGCTCCGGCTCATTGATGCCCATTTGCGCATTTTCTCCAGTTTGTCCTGAGGTTGTAGTGGCTCAGCTCTTCATGCTGCTCATAGGAACATGAGCCTGGTTGAGGCCTGTATGCTGTGACTGAGCATTTTTCAGCTAATAATTGCTCATGCTGACCTGAATTTGAAACTTGGACACACGTACATCACAGATATGAAAGACTAGCTCACACCTTTCACTTCATTTTGGGGATTTTTGAACGATCTTTCCCCAAATACTCCACGGTGCACTATAGAGTCTGTTTCTCACTCAGTTCTGATCTCACTCAATGTGGATGTTCACTGGACTGGCTCGAAGCTTTCCAGCTCCTGTTAAAGCTTCAAAAATGCACCATGTGCACACTTCCAATCCAGCGACTGAAATAAGGGACGGACTCTGAAACTTGGCACGTCCAGGcgtttaattttatgtaaaataataatagaaaaagtGATTCTGTAACATGAGCAGCTGACTCCTCAGGCTGCTGACTTTGTTTCAACATGTACAGTTTGTCAAAAGGTTGTCATattgttttgtgcatttttgtatGAGATGGCAATAGAAGTTTGTGCAAGATTTATATCAAA
>XM_026946218.2
CAAGACGAAGACTGAGGTGGGGGgaggaaagggggaaaaaaaaggcctCGAAGATGGCGGCCGCGAGTGATTTGCGGTGCATGTTGACAATCTGATTGCACGCTGGGGACGTTTTTGGTATTGTATTTTCGTTAAGAGAATACAGAAGAGTCGTGAATAAAAATAGCTTTATAGACTCAGTCAGCACTGGATATTTTTGCGGTGTAGCTGAAGGTGCACCATCATGGCGACTGACATCGGCTCCCCGCCGCGGTTTTTCCACATGCCTCGGTTCCAGCACCAGGCGCCTCGGCAGCTCTTCTACAAGAGGCCGGACTTTGCGCAGCAGCAGGCCATGCAGCAGCTCACCTTCGACGGCAAGCGCATGAGGAAAGCAGTAAACCGCAAAACAATCGACTACAACCCGTCCGTCATCAGATACCTCGAGAATCGTTTGTGGCAGCGGGATCATCGAGATTTGCGTGCTATCCAACCGGATGCAGGTTGCTTTAATGATCTTGTCCCTCCCGTCGGTATGCTTAATAACCCCATGAACGCCGTCACCACAAAGTTCGTCAGAACATCCACCAATAAAGTGAAATGCCCAGTGTTTGTAGTACGGTGGACCCCTGAAGGCAGGCGACTCGTAACCGGGGCCTCGAGTGGGGAGTTCACGTTGTGGAACGGCCTTACATTTAACTTTGAGACTATTTTACAGGCTCACGACAGCCCGGTGCGAGCAATGACGTGGTCTCACAACGACATGTGGATGCTGACCGCCGACCACGGCGGCTACGTGAAGTACTGGCAGTCCAACATGAACAACGTCAAGATGTTCCAGGCGCACAAGGAGGCGATTAGAGAGGCCAGTTTCTCTCCTACGGATAATAAATTTGCCACTTGCTCTGATGATGGAACTGTGCGCATCTGGGACTTTCTGCGCTGCCATGAAGAAAGAATTCTAAGAGGTCACGGCGCAGACGTTAAGTGTGTCGACTGGCATCCCACCAAAGGCCTGGTGGTCTCAGGCAGCAAAGACAGCCAGCAGCCTATCAAGTTCTGGGATCCAAAAACTGGCCAGAGTCTGGCAACATTACATGCCCATAAAAACACGGTGATGGAAGTGAAGTGGAACCTGAACGGTAACTGGCTGCTGACGGCATCGCGTGACCATTTATGCAAACTGTTCGACATTCGCAACCTGAAAGAAGAGCTGCAGGTGTTCAGGGGACACAAAAAGGAAGCTACAGCTGTTGCCTGGCACCCAATCCATGAGGGTCTTTTTGCGAGTGGAGGCTCTGATGGATCTCTGCTCTTCTGGAATGCAGGGGTGGAGAAGGAGGTGGGTGGTATGGAGATGGCCCATGAGGGTATGATCTGGAGCTTAGCCTGGCATCCTCTTGGCCACATTTTGTGCTCGGGGTCTAATGACCACACCAGCAAATTCTGGACCCGAAATCGACCAGGAGACAAGATGCGCGACCGCTACAACCTGAATCTCCTACCAGGAATGTCGGAGGACGGAGTCGAATATGATGACATGGAGCCCAACAATCTGGCCACCATTCCTGGGATGGGGATCCCGGAGCAGCTGAAAGCAGCCATGGAACAGGAACAAACCAGTAAAGAGACAGTACCGGAGGCTGAGATGAGCATCCCAGGGCTGGACTGGGGAATGGATGAGGTGATGCAAAAGGACCAGAAGAAACCACCAACAAAGAAGGTTCCCTACGCAAAACCAATTCCTGCTCAGTTCCAGCaaGCCTGGGCAGAGAACAAGGTGCCAACTATGGTTCCAGGAGAGCCACCCAAGGAGAGAAAGGATGAGAAGGTGGATGGAAAGAAGAAGACTCAGGCTGAGATTGAGCAGGAGATGGCTGCACTGCAGTACACAAACCCCATGCTGTTAGAGCAACTGAAGATTGAGCGAATGGCCCAACTCCAGGATCAGAGCATGCCACCTCCTGGAGGCCAGCCAGGCAACATGCCATCCTTCCCTGGGCAAGGAGGCCCCATGGCACCGCCTCCACAGGGCTTCCCTCAGTCAATGCCGCCCCAGCAGATGCCTCCCAACATGGGGCCTCCGATGGGACAAGGTGGCATGCCCGGCCCTTATATCCCCCCAGGTCAGATGGGACCTCCAGGGCCTTTGCCTCACCAGGGTCCTCCTCCGCAGGGCATGATGGGACCTCCAGATCTCCACGGACCTCCCCGCCACCCTGGACCTCACAGGAATATGGGGCCTCACGGCATGCCACCAGGGCCTAGGGGCATGCAAGGTCCTCCACCAGGTCCGATGCCTTCAGGACCACCTACAGGAGGCATGATGGGACCTCCACCTCGGGGTCAAGGGCCACCCCAGGGAGGCATGATGCATCAGGACATGCGCGGACCAGCACCTCATGGAAACATGATAGGTGCACAGGGGCCTCCGCCAGGAGGAATGATGGGGCCTCCACCCAGAAATCACGGCATGGGCAACATGCACGGAATGGGGCCTCCTCCTGGAGGAATGCACGGGCCTCCAAACAATATGCAGGGGCCACCGGGTAACATGCAAGGACCTCCTCCGTATATGCAGCAGGGCAAGCCGCCACACATGGGCGAGGGAAACAGAGGACAGTTCAACCAGGGACAGAATTCTGGCCCACAGTCAATGATGCATGGTCCTGGTGCCAAAGACGGACCTCGAGGGCCTCCGAACCACCACATGGGGCCTCCACCTGAGCACCAGGGCTCGGACGGAGGTTCTCAGTACTGGGCGGAGGACGGAGGGTACCAAGAGGGCTGGAGGAGACCGGGACAGGACTTTCACGGAGATCCCAGGGGCCACCGAGGAGGTTCTGGAGGGCAGTGGGAAAACCAGGAGAGGTTCCCTTCTCACGACGATGACTACGAAAGGTTTGATGATGGATATGAGGGTGCAGGGGATGGGTACGAGCAGAGGCCGAGGCGACCACCACATTCAGACGATTCttTCAGGAGAGGTGGAATGAGCGGACGTGGAGGCCGAGGAGGTTACCAGGATGAGTACGGAGGAGACGAGAGCTTTGATTCTCAGGACGAGATGGGCCAGGGCTGGGGGAATGGAGGGAGAGGGAGGCCACGTGGAGGACCACCGCGTGGAGgtcatGAGGGTTATCGGGACAGCCAGAGAGGTGACCATGGCATGCACGACAGCCCGTCTGCAGTCAGTAGAGAGCGATCTTCTTCTCTACAGGGCATGGACATGGCCTCACTTCCACCTCGCAAACGTCCCTGGCACGACGGCCCTGGCACCGGAGACATGGACTCACCCGGAGCTGGACCTGATGACCGAGGGGCAGGTCGGCCTCCATCACGTGATGACGTCGGTTACGGTCCTCCTCCATCCAGGGGCGGTAGAGGAGGATGGGTTCGCGGTGGCCGTGGAATGAGAGGAGGCCGGGGACGGTAGGAGGAGCTACACCCTTAAGACAGCAGGCTGGACACTGTGGATTGAAAAAAGGACCAAAGGAGCCACAAATCTGCTCCATCAGCTCCGGCTCATTGATGCCCATTTGCGCATTTTCTCCAGTTTGTCCTGAGGTTGTAGTGGCTCAGCTCTTCATGCTGCTCATAGGAACATGAGCCTGGTTGAGGCCTGTATGCTGTGACTGAGCATTTTTCAGCTAATAATTGCTCATGCTGACCTGAATTTGAAACTTGGACACACGTACATCACAGATATGAAAGACTAGCTCACACCTTTCACTTCATTTTGGGGATTTTTGAACGATCTTTCCCCAAATACTCCACGGTGCACTATAGAGTCTGTTTCTCACTCAGTTCTGATCTCACTCAATGTGGATGTTCACTGGACTGGCTCGAAGCTTTCCAGCTCCTGTTAAAGCTTCAAAAATGCACCATGTGCACACTTCCAATCCAGCGACTGAAATAAGGGACGGACTCTGAAACTTGGCACGTCCAGGcgtttaattttatgtaaaataataatagaaaaagtGATTCTGTAACATGAGCAGCTGACTCCTCAGGCTGCTGACTTTGTTTCAACATGTACAGTTTGTCAAAAGGTTGTCATattgttttgtgcatttttgtatGAGATGGCAATAGAAGTTTGTGCAAGATTTATATCAAA

Function

symbol description
wdr33 Predicted to be involved in mRNA polyadenylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human WDR33 (WD repeat domain 33).

NR:

description
pre-mRNA 3' end processing protein WDR33 isoform X5

GO: NA

KEGG:

id description
K15542 PFS2; polyadenylation factor subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946217.2 True 4205 mRNA 0.54 23 18490937 18516265
XM_026946218.2 False 4102 mRNA 0.54 22 18490937 18516264

Neighbor

gene id symbol gene type direction distance location
si:ch1073-184j22.2 LOC108280510,LOC108440875 coding downstream 2521 18486279 ~ 18488416 (-)
phb2a phb2,LOC108440869,LOC100703857,LOC101465856,LOC107653518,LOC102211951,LOC102296991,LOC107564245 coding downstream 110423 18373327 ~ 18380514 (-)
ptmab NA coding downstream 147093 18340023 ~ 18343844 (-)
dlg1l dlg1l,LOC108280564,LOC108440872,LOC105899217 coding downstream 175948 18229954 ~ 18314989 (-)
LOC113546400 LOC108280488 coding downstream 279475 18194919 ~ 18211462 (-)
LOC113546416 LOC108280513 coding upstream 5136 18521401 ~ 18526982 (-)
LOC113546413 LOC108280516,LOC108280512 coding upstream 10905 18527170 ~ 18534602 (-)
LOC113546415 LOC108280512,LOC108280516 coding upstream 18848 18535113 ~ 18540009 (-)
saga LOC108280708,LOC107572428,LOC107673985,LOC107737416,LOC108440874 coding upstream 30904 18547169 ~ 18553875 (-)
cldn15la cld15 coding upstream 40069 18556334 ~ 18560556 (-)
LOC117599933 NA non-coding downstream 5457 18474224 ~ 18485480 (-)
G322552 NA non-coding downstream 58194 18430135 ~ 18432743 (-)
G322551 NA non-coding downstream 60934 18429659 ~ 18430003 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding downstream 63868 18426733 ~ 18427069 (-)
LOC113546439 NA non-coding downstream 144093 18344046 ~ 18346844 (-)
G322827 NA non-coding upstream 240108 18756373 ~ 18756647 (-)
G322831 NA non-coding upstream 248494 18764759 ~ 18764999 (-)
G322849 NA non-coding upstream 295745 18812010 ~ 18812377 (-)
G322889 NA non-coding upstream 426313 18942578 ~ 18956617 (-)
G323007 NA non-coding upstream 539222 19055487 ~ 19066748 (-)
G322538 NA other downstream 96114 18394249 ~ 18394823 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 618829 17853847 ~ 17872108 (-)
G322080 NA other downstream 990105 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1517167 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1903121 16564708 ~ 16587816 (-)
G322826 NA other upstream 237507 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 468908 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 486974 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 558735 19075000 ~ 19077917 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 959847 19476112 ~ 19507197 (-)

Expression


Co-expression Network