LOC113546402 (LOC108280489)


Basic Information

Item Value
gene id LOC113546402
gene name LOC108280489
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18185908 ~ 18194006 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946256.2
ACGGTGACTTTTATAGCTTTTATGCCCAAATCCAGGAAGCAGGATATGATCTGAGCCCCAAGCCACTCACATGACTGCTGATATTTTGCAGAACCCTGTTCCTCAGAAGCATCTTGCTGTTCATCGGGAAGCCACATTTCTACGCAACGTTCCATCAGCCCCGGATCATGGAGGATAACAGCAGTCAACTGGAACTGATAATGTCTGATTTGGATGAGGAAGCTGAAGGGAACAGAGTCGAAGAGGTTGTGACTAATCGCGTCCATCCTTCCTTCATCAGATCAAGCCAGCATACTTTCAGTAGCATCTGCTTCATGGTTACTGCCGCTCTTTTCCTGTTTGCTTTTGGATCCCTGATTGGCTACGTTGCTCATACAAAGAGAGATGGAGGCACTCCAAGCTGCATAGAGTCTACTTCCTCTGAAGATGTGGTTCAGACAGAAACAATCTTAGACTGGAGCAATATTACAtccttgttaaaaaataaactgaccaCAAGCAGCATTGAAAACAGTCTTAATGAATTCTCAAGTACCAGTCATCAGGCAGGATCTCCAGGAGACATGGAGATGAGCAGTAAAGTGTGGAAAAAATTCACTGATTTTGGCATGATGCCTTGGACTGATTCACACTTTGTTAAGCTCCATGTCCGTCCTACAAAAGGCACCAACACAGTGGTGTTccgtaataaaacattttctgaaccTGGCTATTTGGCCTACAGTCCGACTGGAACAGCACAGgGTGCAGTTCTGTATGCTCATTACGGACAAACAGGGGACTTTAAGTCCCTGCAAGATTTACATATAAGTTCAGAAGGAAAGATCGTCTTGATCAGAGCTGGAAAAATAAGTTTTGCTGAAAAGGTTGCTAACGCTGCCAGTGTGAACGCAAGTGCAGTGCTGATCTATCCGGATCCTGCTGACTACTCGTTTGATGAAGAAACTAGTCTGTTTGGTCATGTCCATCGTGGTTCTGGTGATCCGTTCACTCCAGGTTTCCCATCTTTCAACCACACTCAGTTTCCTCCAGCTAAATCCTCTGGTCTGCCAAGCATACCTGCCCAGACCATCAGAGCCAGTACAGCTGCAGCGATCATGAGTAAAATGGGAGGTCATGATCCACCTCCTGAATGGGCTAGCGGCAGTCTGCGAGATGTAACATACAAGCTTGGTGGTGATGATGACGTTGTCTCTGTTGACGTCAACAACGATCTCACTGTGACGAAGATCTTCAACATGTTTGGAGTCATCAAGGGTTTCATAGATCCAGATCGTTATGTGGTGATTGGAGCTCAGAGAGATGCCTGGGGTCCTGGATTTGCGAAGTCTACCGTTGGCACGAGCTTGCTGATTGAGTTAGCCAGAGTTATTACCAGCATGATACATGAAGATGGATTCAGACCCAGGAGGAGCATCGTGTTTGCAAGCTGGAGTGCTGGAGAATACGGGGCTGTGGGTGCCACCGAGTGGCTGGAGGGCTATTTGTCTTCATTGAATATGAAAGCCTTCTCCTACATTAGCCTGGATGGGGTTGTCACAgGTTCCGTTTTCAAAGCAAGTGCAAGCCCATTGATGTATGACTTGATAGAAAGTACTCTGAAAGAGGTATCTTCCCCCAGTGACCCCAGCAAGAGTTTATATTCTCAAGTGGCTGGAAACAACTGGGAGGTGGctgtGATGGAGCCGATGAGGATGGATGACCCCACTTATCCATTCCAACCCACCTTCGCTGGTATTCCGTCAGTCTCATTCCAATTTACTGAGaATAAACAGTACCCATTCTTCGGCACCATGTTAGACACCAGAAAGAATCTGGAAGCTAAAACATCTACGGAATTGCTTGTGGTGGCCAAGGCAGCAGGTGAGATCGCAGGGGTGATGGCTCTTCGCCTGGTGCATGACCGCCTGCTCAGACTGAACGTGGAGAAATACAAAAACGTCATGAATATACACATAGTCAAAATCAACAAAGAAGTGATGCGTCTGCAGAAGTTCAGCCACCTTACAGAGCATGTGCAAATGCAGTGGTTGATGTCAGCTTTGGGTTCATACAGTCGTGCTTCTAATCGACTCATCACCAGCATGGAAAACAGCGACCTTTATGACCTGCAGCAATGTCGCATCATCAATGACCAAATCATGGGGgTGGAGAGGAATCTGCTGTCTCCCTACGTGTCTCCCCGGGACACTCCGTTTAGACACATATTGCTTGGCTCTGGGTCACACACTCTGGGAGCTGTGTTCACACACCTGGCCTCCATACAGAACGGTACCTCCAGTGTTGACGCTGTCCTACTGAATAATCAGATTGCCGTGGCTGCCTGGATGATAGAGAGCTGTGCCAGTGCGCTCGCAGGGAACATGTGGGACACGGAAAACGAACTTGCCTAAGAAATTTGCACTGGATTGCACTATTACACTGCATAAGGTGTCAGAGACATTATATGAATGAACTGACATTGATCAGACCGACTTAAAGCATTACTCTGTGCTATATTTCAGCCCACTGCTGTGTTTCACCTGGACGTGTGCCGATAATgtgataaaaaaagaataaaccacttgggacatgcttttataggaaaacaatcaatgccCAAGAACCCCCTTTACaacaccagcctcttttttttctctctcttgaagcaAAACATGGCTTGTCATCGTACCGATAAACAGCAgaacgtaaactcctctgtcctgaagactttactgtGTTGGAAAACATACCGACTGTTAccaagtgctgacactggagactccttccataattgttgaataaacaaatatgtgtATATGGAGTATCCCTGTGAAtaagaatgagcgcattaaacttgtgatttgtcttgcagctggaactactgtcagagattctgttagagaaaatgaatcaacactttctgaccaatcagaatcgagtatt

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946256.2 True 2925 mRNA 0.46 18 18185908 18194006

Neighbor

gene id symbol gene type direction distance location
tnk2b tnk2 coding downstream 760 18131956 ~ 18185148 (-)
tmtopsa tmtopsa,LOC108280164,LOC108430153 coding downstream 81103 18073134 ~ 18104805 (-)
LOC113546406 LOC108280815 coding downstream 221614 17910395 ~ 17964294 (-)
mkxb mkx coding downstream 295053 17877343 ~ 17890855 (-)
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding downstream 344723 17785947 ~ 17841185 (-)
LOC113546400 LOC108280488 coding upstream 913 18194919 ~ 18211462 (-)
dlg1l dlg1l,LOC108280564,LOC108440872,LOC105899217 coding upstream 35948 18229954 ~ 18314989 (-)
ptmab NA coding upstream 146017 18340023 ~ 18343844 (-)
phb2a phb2,LOC108440869,LOC100703857,LOC101465856,LOC107653518,LOC102211951,LOC102296991,LOC107564245 coding upstream 179321 18373327 ~ 18380514 (-)
si:ch1073-184j22.2 LOC108280510,LOC108440875 coding upstream 292273 18486279 ~ 18488416 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding downstream 193040 17990764 ~ 17992868 (-)
G322250 NA non-coding downstream 332071 17852633 ~ 17853837 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding downstream 335536 17849152 ~ 17850372 (-)
G322072 fuz non-coding downstream 704523 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 795989 17359788 ~ 17389919 (-)
LOC113546439 NA non-coding upstream 150040 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 232727 18426733 ~ 18427069 (-)
G322551 NA non-coding upstream 235653 18429659 ~ 18430003 (-)
G322552 NA non-coding upstream 236129 18430135 ~ 18432743 (-)
LOC117599933 NA non-coding upstream 280218 18474224 ~ 18485480 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 313800 17853847 ~ 17872108 (-)
G322080 NA other downstream 685076 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1212138 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1598092 16564708 ~ 16587816 (-)
G321462 NA other downstream 1818904 16357574 ~ 16367004 (-)
G322538 NA other upstream 200243 18394249 ~ 18394823 (-)
G322826 NA other upstream 559766 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 791167 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 809233 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 880994 19075000 ~ 19077917 (-)

Expression


Co-expression Network