yme1l1b (yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521)


Basic Information

Item Value
gene id yme1l1b
gene name yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17842449 ~ 17853870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946259.2
AGCGTCCACACGGGGGCGCTAATGCCGCGGCAGCTAGCGGAAGCTACCGGGAAAAGCTCGCCGAGGACGCCGGTGGAGGACGTTTCATTTAAACTAACACAACTCAAATCTACTTATATGTGTCGTGTCACTTAGAATTTGTCGTTGCTTTATcggaaatgttttctttctcgTCCACCGTACAGCCGCAGGTCACAGTTCCACTGAGTCACCTGATCAACGCCTTTCACTCTTTAAAAGGTTCAGTGGTCAAACCTCTGCACAGAGAAAGGAGACCGGAGCAAGAGCTACACATCCCAGAGCCGTCATGGAGCCTCAGAGATGTGGGATTGACGGATCTGGGAGTAGAGCAGCTGGACGAACTTGTGGACAGACTGTTGCCGTGCGTGACTCAGGACGTGTCATCAAAACCCCCTAGAGCTGAATCACACCCCTGGAGGACGTCCTACCTGTCCACGGACTCCTTCTTTCACAACAAATATgGTTTTTCTGTCGCCAAGATGGGAGCGGCATCGCCACTTTTTTGCAGACAGAGCCCTTCTGCTCTTCAGACCTTGTGTGCTGATCTAAACGTCTGGCCAGtgttgATCCAAAGACGAGGCTTTAAAACCCTGAAGTCCAAAACGAGGCGTCTTCAGAGTGGCTTTGACCAGTCACAGGACACGGACACATTCACTCCGTCTTTTATGAAGGGCTTGCTTATGCGGGACAAAAGCCAAGTTCCTGAGACTTTAGACAATCTTCTGAAAAGCAGAAACATTCCCGACGCACATCACGACGCTTTCAAGACGGGTTTCGCTGAGGGCTTTCTGAAAGCTCAGGCTCTCACACAGAGAACCCAAGAGTCTTTAAGGCGAACACGGCTGATCCTGTTGATCCTCTTGCTGGTTGGATTGTACGGACTCTCCAAAACACCGTTTCTGTCAGTGCGATTCCGAACCACATCAGGCCTGGACTCGGCAGTGGACCCCGTCCAGATGAAAAACGTCACCTTCGAGCATGTGAAAGGAGTGGAGGAGGCCAAGAACGAGCTGCAGGAGGTAGTGGAGTTCCTCAAGAACCCACAGAAGTTCACCGCCCTGGGAGGAAAGCTCCCTAAAGGGATTTTGTTAGTCGGCCCTCCAGGAACGGGGAAAACTCTGCTGGCACGCGCCGTGGCAGGGGAAGCTGACGTGCCTTTCTACTACGCCTCAGGATCAGAGTTTGACGAGATGTTCGTTGGGGTCGGCGCAAGCCGTATCAGGAACCTGTTTCGGGAGGCCAAAGCGAATGCTCCGTGTGTGATCTTCATCGATGAGCTCGACAGCGTAGGAGGGAAGAGAATCGAGTCTCCTATGCACCCTTATTCGAGGCAGACCATCAACCAGCTTCTGGCTGAGATGGATGGATTTAAACCAAACGAAGGTGTCATCATTATCGGGGCTACGAACTTCCCTGAAGCTTTAGATAACGCCCTGATCCGGCCGGGACGCTTTGACATGCAGGTCACTGTCCCCAGACCCGATGTGAAAGGACGGACGGAGATTCTGAAGTGGTACCTCAAAAAAATCAAAGTAGACCCAGCTGTGGAGGCCGAGATCATTGCCAGAGGAACGGTGGGTTTCTCCGGAGCCGAGCTGGAGAACCTGGTGAACCAGGCTGCCTTGAAGGCTGCTGTGGACGGGAAAGACATGGTGACCATGAAGGAGCTGGAGTTCGCCAAGGACAAAATCCTGATGGGCCCGGAGCGCCGGAGTGCCGAGATAGATAAGAAAAACAAAGTGATCACAGCCTACCACGAGTCAGGACACGCCATCATCGCATACTACACCAAAGACGCCATGCCCATCAACAAGGCTACGATCATGCCGAGAGGCCCCACTCTGGGTCACGTGTCCATGCTGCCAGAGAATGATCGCTGGAGTGAGACTCGAGCTCAGCTTCTCGCTCAGATGGACGTCAGCATGGGGGGCCGCGTGGCAGAGGAACTCATTTTCGGAAATGACAATATCACCACAGGTGCGTCCAGTGATTTCGACAGCGCTACGAAAATCGCCAAAATGATGGTAACGCAGTTCGGCATGAGTGAAAAGCTGGGTGTCATGACGTACACAGATCTGTCGAAGCAAAGCCCAGAGACGCAAGCAGCCGTCGAACAGGAAGTCAGGACACTTCTGAGAGATTCATATGAGCGTGCTAAAGCTCTCCTGAAGGCCCGTGCGAAAGAGCATAAGAACCTGGCTGAGGCTCTGCTGAGGTATGAGACGCTGGACGCCAGAGAGATTCAGATGGTCTTGGAGGGGAAGGCGTTGGGCAGCAGATGAGTCTCACaccgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatgtacataAGCGCATAAGCAATACAACCTCCTGATAAGCTTAAGTTCGAGCCTTTTTTGCTCTGTACGTACATATAGGTAAATGATGAACATGTGTTTAAATCCACACTACTCCATAATTCCCGCTTGCCTAAAGGCATTTCCCACTAAGTTCTCCACAGTGGAGAGGTGATGTATGCAGAGACACGGAGTCAGATGACGTGTAATCGCTGCTCATGGTGGCCTTTAGGAAAACATATGGAAATGTACAGGACATGAGAAATTCTCAATGCACTTTGTAGAtataatgacagtgatgtatGTTTAGAGTATGCACTGTCTTGTGGGGGGGGAAAAATGCTGCTTTTCGGATCTTCTAATTTTGGCACAGCATGCTGGATTACTTTGTCAGAATTCCACAGGAAGGTCTGTAGATCAATACGGAGACTATGTGTTTATTCGTACTGACTTTACCAAAGACAGGGTTTCACAAACTAGAAATCAGAAACAGATGACGTATAGCTAGAGAAAACACTGCTGTCACAATAGTCACAAGGTCAGTTAGTGCAAAATCTGGACTTTAAAAGTGTTTAAGTCTGAAAATTTCATTTAGTCTGGTTCTCATTTCCACCATTCTCTGTGATCATGAAACTAAAATTAGAGACAATATctgaaatattgtatatatgctACATTAtgtattgggaaaaaaaagcattatttaaaaGCCATACACAATCCTAAAGTCTCCTTACAGGCTTGGCTGAGGTTGCTGGTTATTTGTGTATTGCTGCATTAGTGAAATACACGGTATTCTTTAGAACTAAGTATAGTTTGGTTTGGTCTACCTTTACCTTTCCTTTATCCAATCTATGTTAATCATGTATATATCAATAAACTTGTGTTATGTTGGAACATTTTATCTTTGTATATAGATGTATAGAAGAATGTAAGCTTGAAGTTTGatggatttttatttggaaTTGAGTTCGTGCATCATTAATGATGAATGAGtggttaaatgaataaaagttatATGATAAACTGTGA

Function

symbol description
yme1l1b Predicted to enable ATP-dependent peptidase activity. Predicted to be involved in mitochondrion organization and protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in optic atrophy 11. Orthologous to human YME1L1 (YME1 like 1 ATPase).
yme1l1 Enables ATP-dependent peptidase activity. Involved in several processes, including cellular protein catabolic process; mitochondrial protein processing; and protein hexamerization. Located in mitochondrial inner membrane and nuclear body. Implicated in optic atrophy 11.

NR:

description
PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946259.2 True 3397 mRNA 0.48 18 17842449 17853870

Neighbor

gene id symbol gene type direction distance location
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding upstream 325082 17514697 ~ 17517367 (+)
gpt2l LOC108280657,LOC108430180,LOC107599855,LOC107708598 coding upstream 335062 17487387 ~ 17507387 (+)
hecw1b hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981 coding upstream 364628 17433918 ~ 17477821 (+)
ccr12a LOC108280814 coding upstream 412724 17427910 ~ 17429725 (+)
si:ch211-106n13.3 LOC108280813,LOC108433067 coding upstream 415185 17400391 ~ 17427264 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding downstream 6441 17860311 ~ 17872029 (+)
wacb LOC108280665 coding downstream 112023 17965893 ~ 17979122 (+)
bambib LOC108280666,LOC108430169 coding downstream 136855 17990725 ~ 17994678 (+)
gnb4a gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752 coding downstream 581479 18435349 ~ 18449078 (+)
si:ch1073-184j22.1 LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312 coding downstream 600266 18454136 ~ 18477637 (+)
G322146 NA non-coding upstream 55748 17721938 ~ 17786701 (+)
G322127 NA non-coding upstream 210937 17631214 ~ 17631512 (+)
LOC117599934 NA non-coding upstream 305289 17525571 ~ 17537160 (+)
G321704 LOC108410862 non-coding upstream 881715 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 949425 16892813 ~ 16893024 (+)
G322233 LOC108280496 non-coding downstream 678 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 220459 18074329 ~ 18074748 (+)
G322365 NA non-coding downstream 344970 18198840 ~ 18199709 (+)
G322398 NA non-coding downstream 375525 18229395 ~ 18231463 (+)
G322405 NA non-coding downstream 484459 18338329 ~ 18343490 (+)
npc1 npc1 other upstream 176236 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 205840 17570649 ~ 17636609 (+)
fuz fuz other upstream 358772 17478834 ~ 17483677 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 982767 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 1048751 16791402 ~ 16793698 (+)
si:ch211-162e15.3 LOC108280563 other downstream 372051 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 540153 18394023 ~ 18430022 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 962139 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 1090828 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 1350788 19204658 ~ 19220229 (+)

Expression


Co-expression Network