mmp16b (LOC108280576,LOC108430178,LOC107552291,LOC107566471)


Basic Information

Item Value
gene id mmp16b
gene name LOC108280576,LOC108430178,LOC107552291,LOC107566471
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17527966 ~ 17552937 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946260.2
AGCCAGCCAAACGCACAGCATCGCAGGGAATTAAAGCGCATGCGCAGTTCCAGTCTCCGCGCATACCATGggatgctgctgctgatgctgctgatgCTAGGGCTGGATGCAGAAACAGCGTGCCTGCTCTCCTGCAGGATGCAGAACTGACGCAAAGGCAATGCGTTAAAACGCGCAGATGTTAGGAGGCATGTTTGTTCATGAGCGAGCCTGAATCCGAGGAGATGTGGTCAAGCAGAAAACCCACGGATGCTCTTCTGTCGCGCACTGCTTCCTCCATCCCGCTCCCAGCGAGTCGCCCTTGATATAGGAGCAAGCCTCGACACCTCCAGCCATGAACACCGCAGTGTGTTTTCTGCACAAACCCAGAGCCAGgctggcgtgtgtgtgcgccGCGCTGCTGTGGCTACATGCGTCCTGGTGGTCGGTGTGCGCGGGAGACGACCAGTTCAGCGCCGAGGTTTGGTTACAGAAGTATGGCTACCTCCAGCCCACGCAGCCCAACATGGCCGTCCTGCGCTCGGCTGTGACCATGCAGTCAGCCATCGCCGCCATGCAGCGTGTCTACGGCCTCAACATCACGGGACATTTAGACCTGAGTACTATAGAGTGGATGAAGAAGCCCAGATGTGGAGTCCCCGATCAGGTCAGGAGACAGTCAGGCTCGCAGTCACGCACACGCCGCTACGCGCTCACTGGACAAAAGTGGCAGCGCACGCACATCACATACAGTATAAAGAATGTGACCCCTAAGGTGGGCGCACGGGAGACTCACGAAGCCATCCGGAGGGCATTTGACGTGTGGCAGAGCGTTACGCCGCTGAACTTTGAGGCTGTCCCCTACAGCGCGCTGGAGAGCGGTAAGCGTGACGTAGACATCACCATTATCTTCGCATCCGGTTTCCATGGCGACAGCTCTCCATTTGATGGAGAAGGAGGCTTCTTGGCTCATGCGTACTTCCCTGGGCCTGGGATAGGCGGTGATACGCATTTCGACTCTGATGAACCCTGGACCCTGGGCAACCCCAACCATGATGGTGAGAGAACGGCAGGGAATGACCTGTTCTTGGTGGCCGTCCATGAGCTGGGCCATGCTCTGGGTCTGGAGCACTCCAATGACCCCACTGCGATAATGGCCCCCTTTTACCAGTACATGGACACGGAGAGCTTCAAACTGCCTCACGACGATCTACAAGGCATCCAGAAAATCTAcgGTCCTCCAGATAAGAACCCTCAGCCGACACGGTTGCTCACGACGGCGCCCCCTCCTCGCCTGCACCCTCCATCTGACCCTCGAAAGCACGACCGTCAGAGCCGTCCTCATCGGCCGCCACAGAAATCCAAACCCTCCAACCCCAACTCCAAACCCAACATCTGCGATGGAGGCTTCAACACACTGGCCATCCTGCGCCAAGAGCTGTTCGTCTTCAAGGATCAGTGGTTCTGGAGGGTGCGTGATAACTCGGTGGTGCCTGGCTACCCCATGCAGATCAGCTACTTCTGGAAAGGGCTGCCTCCCAAGATCGATGCTGTCTATGAGAACAGTGAGGGCAAGTTTGTCTTCTTCAAAGGCCATCGTTTCTGGGTGTTCAAGGACACCACTCTGCAGCCCACGTACCCTCAGGACATCTCGCTGTTTGGCAGTGGGATGCCTTCTCAGAACATCGAGACGGCTGTGTGGTGGGAGGACGTGGCCAAAACCTATTTTTTCAAAGGGGACAGGTACTGGAGATACAATGAGGACATCCGGAGTATGGACCCTGGTTATCCCAAACCCATCACCATTTGGAAGGGCATCCCAGACTCTCCTCAGGGTGCCTTTGTGGACAAGGCTAATGGTTTCACATATTTCTACAAGGGAAAAGAGTACTGGAAGTTCAACAACCGGAGGCTGCGGGTAGAACCGGGGTACCCCAGGTCCATCCTGCGAGATTTCATGGGCTGTGATGGCCTGCCCTCGGACCCCGACTGGGACTGGCGGCCGCCGCAGGACGACGAGCCACCACATTACGAGCATGACGACGTGGATATCGTGCGTAAACCTGAGGGCACGGGTGGCACCGAAAAGGCTGTGGCCATCGCCATACCCTGCGTGCTAGCCCTATGCCTCATGGTCCTACTGCACACTGTTTTCCGGGTCAAGCGTAAGGACACCAAGCGCCACATACTGTACTGCAAGCGCTCCATGCAGGAATGGGTTTGAAAAGTGGGGGGTTCTGACTTCCCCATTCCAAGACATGTGGGATGTACCATTGTGTCTTACCCGAGGGGTGGTGTTGAACCTCTTTCTCTCATGGGAGGGAGGAGGAAAGGAATGGACAGCATGCCCACGTCCTAATTGTGGTGTCTGCTCTTCCCAGGAGCGCTGTGTCgttatgtgtgtgtcatgtcaGGCCTCCGTTGTCGGCTATCCGCAGCCATTTTGAGACTTGAGTCAGATCTCAAAAGTAACTcaataaaataatcactgaaGGATGGaccttttcaaataaaaatacattatgtaTCTCCTACTACTTGTATCAGCTTCACATAAAGTGTGGACTCTTACGTTCCTCCAGAATCTTTATGGTTTAAGAACTGATACTCAGAACAAAACATCCTTGGTTTCCAAAGaccgttgtttttttttttatgttcagtttttttaaagcataccTCTCAGTTTGAGTATAAATTAACTGTGCATACATCTTCAGGTTTTATGCGTTCTATCATTCTGTCATCAGCTTTTACAGTCTCCAACTCTATCTGCAATATTTGGTTGAATGCCTTAATCACATATCtacaatatttctttttcagcGTAACAGTGTGcgtgggtgtgcgtgtgtgtgtgtgtgtacacgtgtatGATAAGAGATGGCTAATCTTGTAACCTAcagtcgagtgcaaaagtttgcatacccttaggccatttttaaattaatagccACGAGACGTTCTGgtcctgatttactaagatctCAAACAAAGAGTCTaatttgtgtgtaataaatTGTGTGCACATTTATTAGGTATGTTCTAGCTGATttacaaaaatgattaaatggaAACAACATTTAAGTAAAGTTGCAAGTTCAGCTCTCACAAAGCCAAATGTCTGAGTAATTACATGTCAAATATGGCACGGATGAAAGGTGGTGAGGTGTTGTAAAACCGTTGAAAACAATTTGATTTCATGTATGAACATAAAAGAGTCCAGAAATGAGTTGTTCTGTTATGTTGTCGACATCAGAGGTACAAATGTCCAGCAAATATCTAATATGAAACCAACTTTACCATGGTAATATTGTCATAATTTCAAGAAAcattctcattattttgagataCTAAAAAACTTCAATGAAATAATGGTTTGATTTTGTCTTCAAATGGCAGAAACAGAGtttttgcaaatttaatacTTGCTCTTCGTTCGtattcatttatacacacacagtgcttgtTCCTGAAATGACTTTCAGGCTGCTGTAAACAACAGCAGGTTCTAAATTAATCAATTTACATAGAATCTGCActgtattttgcacttttaggttatttattaatacatgCAAAATCAGAAACAATGTTATTTTACTCATCTGAAAGATGCAACCCTCCATAAagcctgcacttttttttttttttacacggtGTTTTTACACGCACAGACCTTCAGTAAATCAgggtttcagttcagttttgctgctgttcattcattatgaaaacaaaaatggtcaaatagtgtTTGATAAGACATTAATGctgaaaaaatctaaaataatattatcATACACATCATATATTCTTTACATCAGGgattttctgttgattttatgatttcatatttaagtatttttctgttgattttgcctTATATTTTGGATTGTATTgttgcaggacacac
>XM_026946261.2
AGCCAGCCAAACGCACAGCATCGCAGGGAATTAAAGCGCATGCGCAGTTCCAGTCTCCGCGCATACCATGggatgctgctgctgatgctgctgatgCTAGGGCTGGATGCAGAAACAGCGTGCCTGCTCTCCTGCAGGATGCAGAACTGACGCAAAGGCAATGCGTTAAAACGCGCAGATGTTAGGAGGCATGTTTGTTCATGAGCGAGCCTGAATCCGAGGAGATGTGGTCAAGCAGAAAACCCACGGATGCTCTTCTGTCGCGCACTGCTTCCTCCATCCCGCTCCCAGCGAGTCGCCCTTGATATAGGAGCAAGCCTCGACACCTCCAGCCATGAACACCGCAGTGTGTTTTCTGCACAAACCCAGAGCCAGgctggcgtgtgtgtgcgccGCGCTGCTGTGGCTACATGCGTCCTGGTGGTCGGTGTGCGCGGGAGACGACCAGTTCAGCGCCGAGGTTTGGTTACAGAAGTATGGCTACCTCCAGCCCACGCAGCCCAACATGGCCGTCCTGCGCTCGGCTGTGACCATGCAGTCAGCCATCGCCGCCATGCAGCGTGTCTACGGCCTCAACATCACGGGACATTTAGACCTGAGTACTATAGAGTGGATGAAGAAGCCCAGATGTGGAGTCCCCGATCAGGTCAGGAGACAGTCAGGCTCGCAGTCACGCACACGCCGCTACGCGCTCACTGGACAAAAGTGGCAGCGCACGCACATCACATACAGTATAAAGAATGTGACCCCTAAGGTGGGCGCACGGGAGACTCACGAAGCCATCCGGAGGGCATTTGACGTGTGGCAGAGCGTTACGCCGCTGAACTTTGAGGCTGTCCCCTACAGCGCGCTGGAGAGCGGTAAGCGTGACGTAGACATCACCATTATCTTCGCATCCGGTTTCCATGGCGACAGCTCTCCATTTGATGGAGAAGGAGGCTTCTTGGCTCATGCGTACTTCCCTGGGCCTGGGATAGGCGGTGATACGCATTTCGACTCTGATGAACCCTGGACCCTGGGCAACCCCAACCATGATGGGAATGACCTGTTCTTGGTGGCCGTCCATGAGCTGGGCCATGCTCTGGGTCTGGAGCACTCCAATGACCCCACTGCGATAATGGCCCCCTTTTACCAGTACATGGACACGGAGAGCTTCAAACTGCCTCACGACGATCTACAAGGCATCCAGAAAATCTAcgGTCCTCCAGATAAGAACCCTCAGCCGACACGGTTGCTCACGACGGCGCCCCCTCCTCGCCTGCACCCTCCATCTGACCCTCGAAAGCACGACCGTCAGAGCCGTCCTCATCGGCCGCCACAGAAATCCAAACCCTCCAACCCCAACTCCAAACCCAACATCTGCGATGGAGGCTTCAACACACTGGCCATCCTGCGCCAAGAGCTGTTCGTCTTCAAGGATCAGTGGTTCTGGAGGGTGCGTGATAACTCGGTGGTGCCTGGCTACCCCATGCAGATCAGCTACTTCTGGAAAGGGCTGCCTCCCAAGATCGATGCTGTCTATGAGAACAGTGAGGGCAAGTTTGTCTTCTTCAAAGGCCATCGTTTCTGGGTGTTCAAGGACACCACTCTGCAGCCCACGTACCCTCAGGACATCTCGCTGTTTGGCAGTGGGATGCCTTCTCAGAACATCGAGACGGCTGTGTGGTGGGAGGACGTGGCCAAAACCTATTTTTTCAAAGGGGACAGGTACTGGAGATACAATGAGGACATCCGGAGTATGGACCCTGGTTATCCCAAACCCATCACCATTTGGAAGGGCATCCCAGACTCTCCTCAGGGTGCCTTTGTGGACAAGGCTAATGGTTTCACATATTTCTACAAGGGAAAAGAGTACTGGAAGTTCAACAACCGGAGGCTGCGGGTAGAACCGGGGTACCCCAGGTCCATCCTGCGAGATTTCATGGGCTGTGATGGCCTGCCCTCGGACCCCGACTGGGACTGGCGGCCGCCGCAGGACGACGAGCCACCACATTACGAGCATGACGACGTGGATATCGTGCGTAAACCTGAGGGCACGGGTGGCACCGAAAAGGCTGTGGCCATCGCCATACCCTGCGTGCTAGCCCTATGCCTCATGGTCCTACTGCACACTGTTTTCCGGGTCAAGCGTAAGGACACCAAGCGCCACATACTGTACTGCAAGCGCTCCATGCAGGAATGGGTTTGAAAAGTGGGGGGTTCTGACTTCCCCATTCCAAGACATGTGGGATGTACCATTGTGTCTTACCCGAGGGGTGGTGTTGAACCTCTTTCTCTCATGGGAGGGAGGAGGAAAGGAATGGACAGCATGCCCACGTCCTAATTGTGGTGTCTGCTCTTCCCAGGAGCGCTGTGTCgttatgtgtgtgtcatgtcaGGCCTCCGTTGTCGGCTATCCGCAGCCATTTTGAGACTTGAGTCAGATCTCAAAAGTAACTcaataaaataatcactgaaGGATGGaccttttcaaataaaaatacattatgtaTCTCCTACTACTTGTATCAGCTTCACATAAAGTGTGGACTCTTACGTTCCTCCAGAATCTTTATGGTTTAAGAACTGATACTCAGAACAAAACATCCTTGGTTTCCAAAGaccgttgtttttttttttatgttcagtttttttaaagcataccTCTCAGTTTGAGTATAAATTAACTGTGCATACATCTTCAGGTTTTATGCGTTCTATCATTCTGTCATCAGCTTTTACAGTCTCCAACTCTATCTGCAATATTTGGTTGAATGCCTTAATCACATATCtacaatatttctttttcagcGTAACAGTGTGcgtgggtgtgcgtgtgtgtgtgtgtgtacacgtgtatGATAAGAGATGGCTAATCTTGTAACCTAcagtcgagtgcaaaagtttgcatacccttaggccatttttaaattaatagccACGAGACGTTCTGgtcctgatttactaagatctCAAACAAAGAGTCTaatttgtgtgtaataaatTGTGTGCACATTTATTAGGTATGTTCTAGCTGATttacaaaaatgattaaatggaAACAACATTTAAGTAAAGTTGCAAGTTCAGCTCTCACAAAGCCAAATGTCTGAGTAATTACATGTCAAATATGGCACGGATGAAAGGTGGTGAGGTGTTGTAAAACCGTTGAAAACAATTTGATTTCATGTATGAACATAAAAGAGTCCAGAAATGAGTTGTTCTGTTATGTTGTCGACATCAGAGGTACAAATGTCCAGCAAATATCTAATATGAAACCAACTTTACCATGGTAATATTGTCATAATTTCAAGAAAcattctcattattttgagataCTAAAAAACTTCAATGAAATAATGGTTTGATTTTGTCTTCAAATGGCAGAAACAGAGtttttgcaaatttaatacTTGCTCTTCGTTCGtattcatttatacacacacagtgcttgtTCCTGAAATGACTTTCAGGCTGCTGTAAACAACAGCAGGTTCTAAATTAATCAATTTACATAGAATCTGCActgtattttgcacttttaggttatttattaatacatgCAAAATCAGAAACAATGTTATTTTACTCATCTGAAAGATGCAACCCTCCATAAagcctgcacttttttttttttttacacggtGTTTTTACACGCACAGACCTTCAGTAAATCAgggtttcagttcagttttgctgctgttcattcattatgaaaacaaaaatggtcaaatagtgtTTGATAAGACATTAATGctgaaaaaatctaaaataatattatcATACACATCATATATTCTTTACATCAGGgattttctgttgattttatgatttcatatttaagtatttttctgttgattttgcctTATATTTTGGATTGTATTgttgcaggacacac

Function

NR:

description
matrix metalloproteinase-16-like isoform X1

GO: NA

KEGG:

id description
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946260.2 True 3892 mRNA 0.48 10 17527966 17552937
XM_026946261.2 False 3877 mRNA 0.48 10 17527966 17552937

Neighbor

gene id symbol gene type direction distance location
pter pter,LOC107681810 coding downstream 5737 17518043 ~ 17522229 (-)
zcchc2 zcchc2 coding downstream 136067 17361640 ~ 17391899 (-)
viml NA coding downstream 294830 17221945 ~ 17233136 (-)
pde1cb pde1c,pde1cb,LOC108280739,LOC108433077,LOC107757825,LOC107098293 coding downstream 308793 17118184 ~ 17219173 (-)
neurod6b LOC108280937 coding downstream 421139 17104501 ~ 17106827 (-)
cables1 cables1,LOC107681774 coding upstream 120197 17673134 ~ 17700867 (-)
gata6 gata6 coding upstream 193682 17746619 ~ 17753965 (-)
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding upstream 233010 17785947 ~ 17841185 (-)
mkxb mkx coding upstream 324406 17877343 ~ 17890855 (-)
LOC113546406 LOC108280815 coding upstream 357458 17910395 ~ 17964294 (-)
G322072 fuz non-coding downstream 46581 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 138047 17359788 ~ 17389919 (-)
G321652 NA non-coding downstream 783951 16742906 ~ 16744015 (-)
G321536 NA non-coding downstream 918409 16608816 ~ 16609557 (-)
LOC113533305 NA non-coding downstream 980465 16546239 ~ 16547501 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding upstream 296215 17849152 ~ 17850372 (-)
G322250 NA non-coding upstream 299696 17852633 ~ 17853837 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding upstream 437827 17990764 ~ 17992868 (-)
LOC113546439 NA non-coding upstream 791109 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 873796 18426733 ~ 18427069 (-)
G322080 NA other downstream 27134 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 554196 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 940150 16564708 ~ 16587816 (-)
G321462 NA other downstream 1160962 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 1803610 15687082 ~ 15724356 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 300910 17853847 ~ 17872108 (-)
G322538 NA other upstream 841312 18394249 ~ 18394823 (-)
G322826 NA other upstream 1200835 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 1432236 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 1450302 19003239 ~ 19006379 (-)

Expression


Co-expression Network