mb21d2 (mb21d2,LOC107705301,LOC107572431,LOC107673980)


Basic Information

Item Value
gene id mb21d2
gene name mb21d2,LOC107705301,LOC107572431,LOC107673980
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18574380 ~ 18582220 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946269.2
gcagtgtgCTCCGGCTCGGGCAGGGCGCGGATCGCGCGCGGTGAATGAAGAGGAGGCACCGGAGCGGCGGCCTGCTGTTTCTATGGTGAAGATGGCGGCGCCTGTGCTGAGCAGCCGGAGCGGATCAgcgagcagcagcagcagcccgACCGCTGCGGCCAACAACACCATCAACAACCGCCTCGCGTGCGCACCGGAGCTCGATTTCAGGTCCGGAAGCAGGATGGACGAACTGAACCGACTCATTCAGGAATTCAGCAAACACGATCAGCGCGAGTACGACGACCAGCGCGCGCTGGAGATCCACACGGCCAAGGACTTCATCTTCTCCATGCTCGGCATGGTGCAGAAGCTCGACCAGAAGTTGCCGGTTGCTAATGAGTACCTGCTTTTGTCAGGTGGAGTTCGTGATGGCGTTGTGGACATGGATCTGGATGAACTGGGAGTGTATAACCGTGGCTCAGACTATGACATGGCCTTCACGTTGCTGGTCCCTGCACTGAAGCTGCATGACCGCAACCAGCCCGTCACATTGGACATGCGCCACTCAGCACTGGGTCACTCCTGGCTCAGCCTGCGGTTATTTGATGAAGGCACCATTACACGCTGGAGGGACTGCTGCATGATGGCGGACCACATAAACGGCACCACTAACTACTTCTTCTCGCCCACCCTGGTGGCTGACTGGTTCCAGGAAGCAGTGGCGCTAGTGCTGGCCGAGGTGCAGCGCAAGCCGCAGCGGGGAATGCCGAGGGTGGAACGGGTGGAGCGCCACAGCACGCTTCTCTCAATGATCCTTGGCGTGGGCAGCAGCCGTATGCTCTATGACATTGTACCAGTGGTGTCATTCAAAGGTTGGCCGGCGGTTGCTCAAAGCTGGCTGATGGAGAACCACTTCTGGGATGGGAAGATCACAGAGGAGGAGGTCATAAGTGGTTTCTACCTGCTTCCTGCTTGCTCGGTTTCTGGTCGAAGGGAAAACGAATGGCGGCTATCCTTCGCCCGCAGTGAGGTTCAGCTAAAGAAGTGTATCTCACCTGGCCTCATGCAAGCATACCAAGCCTGTAAGGCCATTATTGTCAAGATGCTTTCCCAACCTATGGTTGTTGGCCCCTACCACTTGCGCAGCATAATGCTATGGGCCTGTGACCGCCTGCCAGCAAATTACTTGTCACAAGAAGACTTTGCTGCCCACTTTTTGCTGGGTCTCATCGATGACCTTCAGCACTGCCTTGTCAACAAGAGCTGCCCCAATTATttcatcccacagtgcaacatgTTGGAGCACCTGTGTGACGAGACAGCAATGTTTCACGCCCGCAAGCTTGCACTCGTGCGCTCTGACCCGGCTGAACACCTTCGTGCTACCATCGAGCAAGCTAAGAGTGCCAACCGCTTGACACAAGAAATGCAGAGGCGTGGAAGTTCTTCTGGCCTGCCTTCACCGCAAAATGATGCTTCCTCTACTGATCATCAACAGCCTGATGACCGGCTAGCCAAAAAACTCCAGCAGCTGGTCACAGAGAACCCAGGCAAGTCCATCTCAGTGTTTATCAACCCGGATGATGTCTCACGACCACACTTCCGCATCGATGATAAGTTCTTCTAAGAACCAGGGAACTCTTCGATGCAGTCAATGGAAGCGTGTTGCACGGTATTGAAGTAAACCTGTCCATTACACAGAGATGCTCTGTCcggtgtggtgtggtggtggAGAATGTTCTCTAGGAGAAACTGAAGTGAGGTCAAAGCAACATCTTAAAGCCTTCTGGGAGTAGAGAACtcttactattttttttctgaggtgtACTTGGACATGCAAAAGTGCTGTGCACAGCCTAATGCATTGTATATGAGAATTACTTCTTTTTGCCATGTTCAGGCAAGCAGTTGCTGCAGCATCTGGAAATACTGTAAACGTCAACTATGATAGTGAATACTGAAGAAGTCTAGAGActaatgaataatgaatcaGTTTCCTTTGTTTCCTAGCTAGTCCTTCATTTGCTTTCTATCATGATCAatctttgtgtttcttttatgGAGGAACAATCTTGTTTTGAAATGATAGTATGTCAAAaaaggccaattttttttttttatatatctggCTAATGGAGAACACTCAAAATACAACTTTAAGTGCAATTAATGAAAAGTACAATTACAGCAAGAGGCTTTTATATaagctgtatgtttttttttaattttccagtCAAAAGAATACAACTTTAATATTTGTCTGCTGTGTAAGATCCCAAAGCATTGCTGCTATcaaaaatgtaagaaatttcatttttttaaaaaatcatttcactttttaaaattgctgCCAACAATTATGACTAACCATTGTAATCAATCAAAACATGCATATCATAAAGAAATTTATCATTCATCCAAAAGCAAGCAACTTGAAGCGGACATTTGAACTATGACAGATCTCCAAGAGAAATTCTAGTTCGCCAGTATTGTATCACTTGTAAGAACGGGAAAAAAAGGATTGTATATGAATGTTTTTGATGTTGTGAACAAAATATGTCTTTTAATTTTGCACAAAATTGACTGGAACCTGCACTGTCTTTCAACCAGCAGCGGCTCAAGACCATAAATGTTGGAGGGGTAGAGcaacattaataacaatataGCCTTAAACAAATTGAAGTCAAGAGGCTATCACATCTGATTttctataggctactatctagtgaattttaaGAGTAACTccataataggcagttgagagttgaCAACAAAGTCATCCAGCATGCtgtctagcagcttgtttttaGTGGTTTTACACGTTTGTTTGATACAGCATGTGTATTTCCAGTCAACAATGTGTGAATTGCTGATGGAAGAGCAAACTTTCTCTCCCAACTACATTTCGAAAATGCAGAAAAGACCTGAAGCTAGCCTGAAAAATTCAGGCACTGGAAAAGagtgacaggttttttttttcttattttcagcctttgcatgggaaacaatGTCACcatgattacacacacatttctgatgtaaatACATTATTCTCACCAAAATCCCTCTTTcactctcccaatctttgcaatataaccatagaaatggttctgtacatcatagatacactgtctgcacttacatttttcctttctttttggAAATAAAGACGATCTTGGCAGTAGGTAGAGTA

Function

symbol description
mb21d2 Orthologous to human MB21D2 (Mab-21 domain containing 2).

NR:

description
PREDICTED: protein MB21D2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946269.2 True 3175 mRNA 0.46 2 18574380 18582220

Neighbor

gene id symbol gene type direction distance location
crfb16 NA coding upstream 1877 18562098 ~ 18572503 (+)
LOC113546359 LOC108280706 coding upstream 28217 18543905 ~ 18546163 (+)
dusp28 dusp28 coding upstream 53390 18517928 ~ 18520990 (+)
sft2d3 sft2d3 coding upstream 84724 18488627 ~ 18489656 (+)
si:ch1073-184j22.1 LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312 coding upstream 96743 18454136 ~ 18477637 (+)
fgf12a fgf12a,fgf12,LOC108280711,LOC108436038,LOC106568709,LOC105006885,LOC106598267,LOC103365152,LOC107549734 coding downstream 2843 18585063 ~ 18637704 (+)
cwc25 cwc25,LOC102792885,LOC101487873 coding downstream 80938 18663158 ~ 18667572 (+)
LOC113546386 LOC108280704 coding downstream 109972 18692192 ~ 18716552 (+)
mffb LOC108280720 coding downstream 165307 18747527 ~ 18754060 (+)
bpnt2 impad1 coding downstream 174509 18756729 ~ 18763488 (+)
G322462 NA non-coding upstream 134514 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 141678 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 200497 18370727 ~ 18373883 (+)
G322405 NA non-coding upstream 230890 18338329 ~ 18343490 (+)
G322398 NA non-coding upstream 342917 18229395 ~ 18231463 (+)
G322696 NA non-coding downstream 133175 18715395 ~ 18720439 (+)
G322738 NA non-coding downstream 182972 18765192 ~ 18765602 (+)
G322744 NA non-coding downstream 228885 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 230283 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 232394 18814614 ~ 18814817 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 144358 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 347147 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 908167 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 937771 17570649 ~ 17636609 (+)
fuz fuz other upstream 1090703 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 233789 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 362478 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 622438 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 731640 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1547033 20129253 ~ 20281067 (+)

Expression


Co-expression Network