gpt2l (LOC108280657,LOC108430180,LOC107599855,LOC107708598)


Basic Information

Item Value
gene id gpt2l
gene name LOC108280657,LOC108430180,LOC107599855,LOC107708598
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17487387 ~ 17507387 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946271.2
TTCGGCTCTGGCAGTAGCGCATGGGAGGAGCCGGATTCTCTACTTGATTCATTCCGTGTCTGAGTAAAGTCTCCTCCCAGAGTTGCTGCGCACACCGGGGAATCTTCAGCCGGCTCCTCGCGGCTCCTCTGTCCAGCCGTCGGTCGTCTGGGAAACCGGGGCAAGCTTCTTCAAACACTTGTGGTCAGAGCCGACTCGTGTGGGTGAAGATGGCCCAGAATGAGGCTCTCAGCCAGCGCAGGAAGGTGCTCACCATCGACACGATGAACGCCAACGTGAAGAAGGTGGAGTACGCGGTGCGGGGACCCATCGTGCAGCGCGCAGTGCAGCTGGAGAAGGAGCTGAGAGAGGGGGTGAAGAAACCCTTTGACGAGGTGATCAGAGCTAACATCGGAGATGCCCATGCCATGGGACAGCAACCCATCACCTTCTTCAGACAGGTCTTGGCATTGTGCTTGTATCCAGACCTGCTAGATGATAACAAGTTTCCTGACGATGCCAAAGATCGTGCACAGCGCATTCTGAAGGCCTGTGGAGGGAGCAGTATCGGCTCATACTCTGCGAGTCAGGGTATCGACTGCATTAGACAAGACGTCGCCTGCTACATCGAGCGTCGTGACGGCGGCATCTCTTGTGACCCGGACAACATCTATCTGACCACAGGCGCCAGTGACGGCATCGTCacCATGCTGAAGTTGCTGACAGCAGGTGAGGGTCGCACCCGTACAGGTGTGATGATCCCGATCCCTCAGTATCCTCTGTACTCGGCTGCGATAGCTGAGCTGGGCGCTGTGCAGATTAACTACTACCTGAACGAGGAGAAGTGCTGGAGTCTGGACATCACTGAGCTGCAGCGCTCCCTACAGGCCGCCCGAGAGCACTGCAACCCCCGAGTCCTGTGCATCATCAACCCAGGCAACCCAACAGGGCAGGTACAGAGCAGGGAGTGCATTGAGGACGTGATCCGATTCGCTGCCAAGGAACATCTCTTCCTGATGGCTGATGAGGTGTATCAGGATAATGTATATGCCGAGGGTTGTGCCTTCCACTCTTTTAAGAAGGTGTTATTTGAGATGGGCCCTGAATTCTCCAACACAGTGGAGCTGGCCTCGTTCCATTCCACCTCCAAGTGTTACATGGGAGAGTGCGGTCTACGAGGCGGATATATGGAGGTGATAAACATGGACCAGGAGGTGAAGGCTCAGCTCACTAAGCTGGTGTCTGTGCGTCTGTGTCCTCCTGTGCCAGGTCAAGCACTCATGGCCCTGGTCACCAACCCTCCACATCCTGGAGAGCCATCACATGCTCAGTTCATCAAGGAGCGCACGGCCACGCTGAATGACCTGGCACAGAAGGCCAAGCTGACTGAGGACATTCTGAACACAGTGCCTGGGATCAGGTGCAACCCCGTGCAGGGGGCGATGTACTCGTTCCCTCGCATCATACTGCCTGAGCGAGCTGTAAAGGTGGCCAAGgagaACGGCCAGGACCCAGATATGTTCTATTGTATGAAGCTCCTGGAGGAGACGGGGATCTGTTTGGTCCCCGGCAGCGGGTTTGGGCAAAAAGATGGAACCCATCACTTCAGGATGACCATCCTACCACCGGCTGATAAACTCAAGATTCTGCTCAATAAAGTGAAAGAGTTCCATCAGCAATTCACCAAGCAGTACTCTTAACACCTCCTCTCAACTTTCTCAACACAGTTGACCAGCCAAGTGCCTAAACCTGCCATCTTCTCCAGACACAACCCAATGGACATCAGCCATTAATATGCATTTCTGACTCCTGAAGTGTAAATCCCATTTTCATAAACTGGTTTTTGCACGCTGATGTACCGATGGATAACCATAAGGGTTAGATTATTAGCACTACACGCTAAAAGAAAGTTTACTTTCTAATAGTCTGATATATGAAATAGTTGAAATGTGGCTGTGTATGGaaaatggggtgtgtgtgtgttggttaaGGGACTTATAGCCAAGTAATTACCACTGGACAAAGCCTAGTCTTGCACTGGTATAATTAAAGtagaatataatattaaatcttTATCCTGTTTATATAGATGtcttaatgattttaatttggAATAGATCAGATAATGTCACAGTAAATGGTGTGGTTTCTCGTTTCCTTTCGAGTGCAACACAACCCCGTGACCACGGGAGGGCACACTCACCTTGACCGAATCATTGTACTGTTCATAAAATGGCAACTTTTTAAATCTTtgcattttaaagcatttgCAGGTGAGATGGTCACACAGACCTCACAATATTCTGTCTGTTTTACTGTATTCTGTCTATCCAAGTGGTGATTTCTTAGTTGGAGGAGGACAAAAAGGTCAGTGTAAtcagaggaagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagataagtaG
>XM_034314525.1
TTCGGCTCTGGCAGTAGCGCATGGGAGGAGCCGGATTCTCTACTTGATTCATTCCGTGTCTGAGTAAAGTCTCCTCCCAGAGTTGCTGCGCACACCGGGGAATCTTCAGCCGGCTCCTCGCGGCTCCTCTGTCCAGCCGTCGGTCGTCTGGGAAACCGGGGCAAGCTTCTTCAAACACTTGTGAACTTTCTCTGCAGGTCAGAGCCGACTCGTGTGGGTGAAGATGGCCCAGAATGAGGCTCTCAGCCAGCGCAGGAAGGTGCTCACCATCGACACGATGAACGCCAACGTGAAGAAGGTGGAGTACGCGGTGCGGGGACCCATCGTGCAGCGCGCAGTGCAGCTGGAGAAGGAGCTGAGAGAGGGGGTGAAGAAACCCTTTGACGAGGTGATCAGAGCTAACATCGGAGATGCCCATGCCATGGGACAGCAACCCATCACCTTCTTCAGACAGGTCTTGGCATTGTGCTTGTATCCAGACCTGCTAGATGATAACAAGTTTCCTGACGATGCCAAAGATCGTGCACAGCGCATTCTGAAGGCCTGTGGAGGGAGCAGTATCGGCTCATACTCTGCGAGTCAGGGTATCGACTGCATTAGACAAGACGTCGCCTGCTACATCGAGCGTCGTGACGGCGGCATCTCTTGTGACCCGGACAACATCTATCTGACCACAGGCGCCAGTGACGGCATCGTCacCATGCTGAAGTTGCTGACAGCAGGTGAGGGTCGCACCCGTACAGGTGTGATGATCCCGATCCCTCAGTATCCTCTGTACTCGGCTGCGATAGCTGAGCTGGGCGCTGTGCAGATTAACTACTACCTGAACGAGGAGAAGTGCTGGAGTCTGGACATCACTGAGCTGCAGCGCTCCCTACAGGCCGCCCGAGAGCACTGCAACCCCCGAGTCCTGTGCATCATCAACCCAGGCAACCCAACAGGGCAGGTACAGAGCAGGGAGTGCATTGAGGACGTGATCCGATTCGCTGCCAAGGAACATCTCTTCCTGATGGCTGATGAGGTGTATCAGGATAATGTATATGCCGAGGGTTGTGCCTTCCACTCTTTTAAGAAGGTGTTATTTGAGATGGGCCCTGAATTCTCCAACACAGTGGAGCTGGCCTCGTTCCATTCCACCTCCAAGTGTTACATGGGAGAGTGCGGTCTACGAGGCGGATATATGGAGGTGATAAACATGGACCAGGAGGTGAAGGCTCAGCTCACTAAGCTGGTGTCTGTGCGTCTGTGTCCTCCTGTGCCAGGTCAAGCACTCATGGCCCTGGTCACCAACCCTCCACATCCTGGAGAGCCATCACATGCTCAGTTCATCAAGGAGCGCACGGCCACGCTGAATGACCTGGCACAGAAGGCCAAGCTGACTGAGGACATTCTGAACACAGTGCCTGGGATCAGGTGCAACCCCGTGCAGGGGGCGATGTACTCGTTCCCTCGCATCATACTGCCTGAGCGAGCTGTAAAGGTGGCCAAGgagaACGGCCAGGACCCAGATATGTTCTATTGTATGAAGCTCCTGGAGGAGACGGGGATCTGTTTGGTCCCCGGCAGCGGGTTTGGGCAAAAAGATGGAACCCATCACTTCAGGATGACCATCCTACCACCGGCTGATAAACTCAAGATTCTGCTCAATAAAGTGAAAGAGTTCCATCAGCAATTCACCAAGCAGTACTCTTAACACCTCCTCTCAACTTTCTCAACACAGTTGACCAGCCAAGTGCCTAAACCTGCCATCTTCTCCAGACACAACCCAATGGACATCAGCCATTAATATGCATTTCTGACTCCTGAAGTGTAAATCCC

Function

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946271.2 True 2432 mRNA 0.50 12 17487387 17507387
XM_034314525.1 False 1818 mRNA 0.55 12 17487387 17506759

Neighbor

gene id symbol gene type direction distance location
hecw1b hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981 coding upstream 9566 17433918 ~ 17477821 (+)
ccr12a LOC108280814 coding upstream 57662 17427910 ~ 17429725 (+)
si:ch211-106n13.3 LOC108280813,LOC108433067 coding upstream 60123 17400391 ~ 17427264 (+)
exoc3 exoc3,LOC107757821,LOC107656144,LOC107713660 coding upstream 126090 17348910 ~ 17361297 (+)
ahrrb LOC108280895 coding upstream 139903 17323911 ~ 17347484 (+)
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding downstream 7310 17514697 ~ 17517367 (+)
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding downstream 335062 17842449 ~ 17853870 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding downstream 352924 17860311 ~ 17872029 (+)
wacb LOC108280665 coding downstream 458506 17965893 ~ 17979122 (+)
bambib LOC108280666,LOC108430169 coding downstream 483338 17990725 ~ 17994678 (+)
G321704 LOC108410862 non-coding upstream 526653 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 594363 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 627809 16792714 ~ 16859578 (+)
G321585 NA non-coding upstream 697780 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 714938 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 18184 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 123827 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 214551 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 347161 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 566942 18074329 ~ 18074748 (+)
fuz fuz other upstream 3710 17478834 ~ 17483677 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 627705 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 693689 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 698419 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 739047 16742805 ~ 16748340 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 63262 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 81685 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 718534 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 886636 18394023 ~ 18430022 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 1308622 18816009 ~ 18871360 (+)

Expression


Co-expression Network