gata6 (gata6)


Basic Information

Item Value
gene id gata6
gene name gata6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17746619 ~ 17753965 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946279.2
AGTCCACTAAAGCATCCATTCGGAAATGTTCTTGGAGAGCCGCAGTGGTGACATGAGCGCTGGATAGCGACAACACACCGATGGAGAAACCCCAGTAGAAGGCTAACTCATCTCTTATCCGTTTTCCACACACCGCGAGCTACCACACGGTTCCTGGATGGACCTGGGCGAGCACAGCTGGTCCACAGTCAAGCGTGAAGTGTCCAGTAACCCGGGCTCGCCGTCTGAGCAGAGCTGCGTTCACGGCGAGCGCAGGGACGAGTTGAGGACATCACCTCTGGACGCAGCGGGGAGTCGGCGCGCAGACACGCGGCCGCTGCCCTCCTACGCCGCCTTCGGCCACCCGGTGAGTTCGGACGACGTGCCGCTGTTCGCGGACCTGGACCAGGCCGCTAAGCTCGGCGCGCACAAGACCGGGATCGTGGTGGACCCCGGCGACATGTACTCGACGCTGGCCGCCTACGAGTCGCCGTCGGCAGCTTACATGCACTCCAGTCCCAACTCGCCGGTGTACGTGCCGACCTCGCGGGTCGGGCCAATGATCCCGAGTCTGCCTTACCTTCAGCCGAGCGCGGCGGCGTCGCAACCGAGCCACGCGGTCAGCAGCCACGCCGCGTGGTCACAACCCGCCCCCGAGAGCCCGTCGTCCTACAGCACCGGGAGCCCACACGCCACCTCCACCCGCTTTCACTACTCACCAAGCCCGCCCGTGAACAACGGCACGGCAAGGGACTCGAGCTACCCGACCACGCTGAACGCCAGCGGCAGGGAGCAGTACCTGTCGCGGCCCCTGAGCGGCTCCTACACCGGGCCGTACGCGCCCTACGTGGGAGCGCAGCTGCCCCAGTTACCCACCGCGTGGCCCGCGGGACCCTTCGATAACTCCATGCTGCATTCATTACAGAGCCGAGCGGCGCCGCTCTCCATCCGACCCGGGCCTGCAGacTTCCTCGAGGACGCGATGGAGAGTCGGGAGTGCGTGAACTGCGGCTCCATCTCCACCCCGCTGTGGAGGCGCGACGGCACCGGTCACTTTCTCTGCAACGCCTGCGGCCTGTACAGCAAAATGAACGGCCTGAGCCGACCATTAATTAAGCCGCAGAAGCGCATGTCGTCTTCCAGAAGAGTCGGCCTTTCCTGTGCAAACTGCCAGACCAGCACTACGACCCTGTGGCGCAGAAACGCAGAGGGGGAACCCGTGTGCAACGCATGCGGACTCTACACTAAATTACACGGGGTACCACGGCCGCTGGCTATGAAGAAGGAGGGTATTCAGACGAGGAAAAGAAAACCGAAAAACTTGAACAAAACAAAGGGATCGTCTGGAAGCAGCTCTGTCCCCGTGactccaacatcatcatcatcttccgcCTCAGAAGAGAACTCGAAGAACAGTCCTCCATCTGCACAGGTGGCCGTGACCTCGgTGAATTCCTCCACTATGGTGGGTCATATAGAAGTTCCAGGCACCACAGGCTCCATAGTGAAGTACCCTGGCCAGGAGGGTCTGTACACTAACGTGGGATTAATGTCCAGCGGCGACGTGGCGGCGTCTGTACGAGGTGACACGTGGTGTCCCATGGCTCTGGCCTGACACTGACCTGTGAGGGAAATAAAAAGCTCCTCATCGCTCTACTCCGCCTCTCCACATCATCCCTGGCATTCATTTGTAAAATGGCTGCTTTCATCACGGGCCTGGAGttgccctgaaaaaaaaaa
>XM_026946280.2
ttttttttggcaataaTGATGAGGCTCCAGTGTGAGAGCACTGAGTCATGACACGGATGGATTCAGTTCTTCACTGGAGTCTCTACAGCAGGACAGAGAGAAGCACTGACTGGCTGCAATGAGGCTAACTCATCTCTTATCCGTTTTCCACACACCGCGAGCTACCACACGGTTCCTGGATGGACCTGGGCGAGCACAGCTGGTCCACAGTCAAGCGTGAAGTGTCCAGTAACCCGGGCTCGCCGTCTGAGCAGAGCTGCGTTCACGGCGAGCGCAGGGACGAGTTGAGGACATCACCTCTGGACGCAGCGGGGAGTCGGCGCGCAGACACGCGGCCGCTGCCCTCCTACGCCGCCTTCGGCCACCCGGTGAGTTCGGACGACGTGCCGCTGTTCGCGGACCTGGACCAGGCCGCTAAGCTCGGCGCGCACAAGACCGGGATCGTGGTGGACCCCGGCGACATGTACTCGACGCTGGCCGCCTACGAGTCGCCGTCGGCAGCTTACATGCACTCCAGTCCCAACTCGCCGGTGTACGTGCCGACCTCGCGGGTCGGGCCAATGATCCCGAGTCTGCCTTACCTTCAGCCGAGCGCGGCGGCGTCGCAACCGAGCCACGCGGTCAGCAGCCACGCCGCGTGGTCACAACCCGCCCCCGAGAGCCCGTCGTCCTACAGCACCGGGAGCCCACACGCCACCTCCACCCGCTTTCACTACTCACCAAGCCCGCCCGTGAACAACGGCACGGCAAGGGACTCGAGCTACCCGACCACGCTGAACGCCAGCGGCAGGGAGCAGTACCTGTCGCGGCCCCTGAGCGGCTCCTACACCGGGCCGTACGCGCCCTACGTGGGAGCGCAGCTGCCCCAGTTACCCACCGCGTGGCCCGCGGGACCCTTCGATAACTCCATGCTGCATTCATTACAGAGCCGAGCGGCGCCGCTCTCCATCCGACCCGGGCCTGCAGacTTCCTCGAGGACGCGATGGAGAGTCGGGAGTGCGTGAACTGCGGCTCCATCTCCACCCCGCTGTGGAGGCGCGACGGCACCGGTCACTTTCTCTGCAACGCCTGCGGCCTGTACAGCAAAATGAACGGCCTGAGCCGACCATTAATTAAGCCGCAGAAGCGCATGTCGTCTTCCAGAAGAGTCGGCCTTTCCTGTGCAAACTGCCAGACCAGCACTACGACCCTGTGGCGCAGAAACGCAGAGGGGGAACCCGTGTGCAACGCATGCGGACTCTACACTAAATTACACGGGGTACCACGGCCGCTGGCTATGAAGAAGGAGGGTATTCAGACGAGGAAAAGAAAACCGAAAAACTTGAACAAAACAAAGGGATCGTCTGGAAGCAGCTCTGTCCCCGTGactccaacatcatcatcatcttccgcCTCAGAAGAGAACTCGAAGAACAGTCCTCCATCTGCACAGGTGGCCGTGACCTCGgTGAATTCCTCCACTATGGTGGGTCATATAGAAGTTCCAGGCACCACAGGCTCCATAGTGAAGTACCCTGGCCAGGAGGGTCTGTACACTAACGTGGGATTAATGTCCAGCGGCGACGTGGCGGCGTCTGTACGAGGTGACACGTGGTGTCCCATGGCTCTGGCCTGACACTGACCTGTGAGGGAAATAAAAAGCTCCTCATCGCTCTACTCCGCCTCTCCACATCATCCCTGGCATTCATTTGTAAAATGGCTGCTTTCATCACGGGCCTGGAGttgccctgaaaaaaaaaa

Function

symbol description
gata6 Enables DNA binding activity. Acts upstream of or within animal organ development; digestive tract development; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; endoderm; mesoderm; and yolk syncytial layer. Human ortholog(s) of this gene implicated in adenocarcinoma (multiple); congenital heart disease (multiple); and pancreatic hypoplasia-diabetes-congenital heart disease syndrome. Orthologous to human GATA6 (GATA binding protein 6).

NR:

description
GATA-binding factor 6-B-like

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0048565 digestive tract development biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0001889 liver development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17897 GATA6; GATA-binding protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946279.2 False 1719 mRNA 0.61 7 17746619 17753965
XM_026946280.2 True 1741 mRNA 0.60 7 17746619 17753630

Neighbor

gene id symbol gene type direction distance location
cables1 cables1,LOC107681774 coding downstream 45752 17673134 ~ 17700867 (-)
mmp16b LOC108280576,LOC108430178,LOC107552291,LOC107566471 coding downstream 193682 17527966 ~ 17552937 (-)
pter pter,LOC107681810 coding downstream 224390 17518043 ~ 17522229 (-)
zcchc2 zcchc2 coding downstream 354720 17361640 ~ 17391899 (-)
viml NA coding downstream 513483 17221945 ~ 17233136 (-)
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding upstream 31982 17785947 ~ 17841185 (-)
mkxb mkx coding upstream 123378 17877343 ~ 17890855 (-)
LOC113546406 LOC108280815 coding upstream 156430 17910395 ~ 17964294 (-)
tmtopsa tmtopsa,LOC108280164,LOC108430153 coding upstream 319169 18073134 ~ 18104805 (-)
tnk2b tnk2 coding upstream 377991 18131956 ~ 18185148 (-)
G322072 fuz non-coding downstream 265234 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 356700 17359788 ~ 17389919 (-)
G321652 NA non-coding downstream 1002604 16742906 ~ 16744015 (-)
G321536 NA non-coding downstream 1137062 16608816 ~ 16609557 (-)
LOC113533305 NA non-coding downstream 1199118 16546239 ~ 16547501 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding upstream 95187 17849152 ~ 17850372 (-)
G322250 NA non-coding upstream 98668 17852633 ~ 17853837 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding upstream 236799 17990764 ~ 17992868 (-)
LOC113546439 NA non-coding upstream 590081 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 672768 18426733 ~ 18427069 (-)
G322080 NA other downstream 245787 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 772849 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1158803 16564708 ~ 16587816 (-)
G321462 NA other downstream 1379615 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 2022263 15687082 ~ 15724356 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 99882 17853847 ~ 17872108 (-)
G322538 NA other upstream 640284 18394249 ~ 18394823 (-)
G322826 NA other upstream 999807 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 1231208 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 1249274 19003239 ~ 19006379 (-)

Expression


Co-expression Network