saga (LOC108280708,LOC107572428,LOC107673985,LOC107737416,LOC108440874)


Basic Information

Item Value
gene id saga
gene name LOC108280708,LOC107572428,LOC107673985,LOC107737416,LOC108440874
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18547169 ~ 18553875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946292.2
tctctttctctgtctcacaccTCAGCGTGATCAGCTGGACCAGACTTCACTGATTGGCCACAATGAGTCCGAAGAATGTCATCTTTAAGAAAGCGTGCAAAGATAAGTCGgTGGCTGTGTATATGGGGAGACGAGATTTTGTTGATCATGTTGATTCAGTGGATCCAGTGGATGGTGTTGTTCTAATAGACCCTGAGCTTCTGAAAGGCAAAAAAGCATACGTCACCCTGTCCTGTACGTTCCGCTACGGGCGAGACGACATGGATGTGATGGGCATAGCTTTCCGGAGAGACATTTACCTCTCCACCCGGCAGATCTACCCCCCTCTGCAGGACAGGGAGCAGTGCACTCTCACCAAGGGGCAGGAGAAACTGCTACGCAAACTGGGCTACAATGCATACCCCTTTTTCTTTGAATTCCCTGATAATCTGCCCTGCTCCGTGGGACTGCAGCCGGCTCCTACCGATGTGGGCAAGCACTGTGCTGTAGAGTTCGAGGTGAAGGTCTTCAGCGCTGAGAACCTGGACGCTAAAGTCCGCAAGAGGAGTACAGTACGTCTGATGATCCGTAAGGTCCAATACGCTCCGGAGAAATCCGGTCCCGCGCCTTCAGTCTCTGTCACCCGTGACTTCCTCATGTCTGACAAACCTCTGCACGTGGAAGCGAGCCTGCAGAAGCAGACATATTATCATGGTGAGCCGATCAAGGTACAGGTCAACATCAACAATGAGTCCAACAAGAATGTGaagaacattattatttctgTGGATCAAACTGCCAACGTTGTTCTTTACTCCAACGACAGCTACATGAAGTCAGTGGCCATAGAGGATTCTGGAGACACCTTGGGTCCAGGTGGCAAAATGGAGAAAGTGTATACACTCTGCCCCCTTCTGGCCAACAACAAGGAAAGGCGGGGAATTGCGCTGGATGGAAAACTGAAGCATGAAGACACCAATCTGGCCTCGACTAGCATAATTAAAGAGGGAGTCCTGAAGGAGGTCTTGGGGATTCTGGTGTCCTACAGAATCATGGTAAAGCTCATCATGGGAGGgCTGATGGGACCCGGTGAGATTGGGCTGGAGTTGCCGTTCCAACTGATGCACCCGAAGCCTGAAGCAGTGAGAGAAAGTGAGCTGGACGACGATATGGTGTTTGAAGATTTCAAGCGCTCTTTTATGAAGGGCATGACggaggatgaagaagaagggAATATTTCTGCTGGGGAGCCTTAAGAAATCTTTGAGGAACCAGCCACTATCTGGACATTATGGCCAGCCTTCTGGAGATGATAGAGAGAGGAGCGAGATCAAGAGTGATCCACAATGAAGATCAGAAATACACTGAGATGAGTTGTGTTCTTCTCTGTAGCGCACTAGAACAAACACTGGCTCTTGGTCTTTGATCTTTTGTGAGTTGTTTTATGTTGAATCATAGTTTTGGAAAAGTCATCACTTCTTTCCAAATTGAAGTAGGTGAACGGTGTTTGGAGAGTGATTTTAGACCTTTTAGTTAACACTTTCAGTATCTGCAAGATAGCAGATATAATAGATGCCATAATGTAGGATTTATGTCATTATATCAGA
>XM_026946293.2
tctctttctctgtctcacaccTCAGCGTGATCAGCTGGACCAGACTTCACTGATTGGCCACAATGAGTCCGAAGAATGTCATCTTTAAGAAAGCGTGCAAAGATAAGTCGgTGGCTGTGTATATGGGGAGACGAGATTTTGTTGATCATGTTGATTCAGTGGATCCAGTGGATGGTGTTGTTCTAATAGACCCTGAGCTTCTGAAAGGCAAAAAAGCATACGTCACCCTGTCCTGTACGTTCCGCTACGGGCGAGACGACATGGATGTGATGGGCATAGCTTTCCGGAGAGACATTTACCTCTCCACCCGGCAGATCTACCCCCCTCTGCAGGACAGGGAGCAGTGCACTCTCACCAAGGGGCAGGAGAAACTGCTACGCAAACTGGGCTACAATGCATACCCCTTTTTCTTTGAATTCCCTGATAATCTGCCCTGCTCCGTGGGACTGCAGCCGGCTCCTACCGATGTGGGCAAGCACTGTGCTGTAGAGTTCGAGGTGAAGGTCTTCAGCGCTGAGAACCTGGACGCTAAAGTCCGCAAGAGGAGTACAGTACGTCTGATGATCCGTAAGGTCCAATACGCTCCGGAGAAATCCGGTCCCGCGCCTTCAGTCTCTGTCACCCGTGACTTCCTCATGTCTGACAAACCTCTGCACGTGGAAGCGAGCCTGCAGAAGCAGACATATTATCATGGTGAGCCGATCAAGGTACAGGTCAACATCAACAATGAGTCCAACAAGAATGTGaagaacattattatttctgTGGATCAAACTGCCAACGTTGTTCTTTACTCCAACGACAGCTACATGAAGTCAGTGGCCATAGAGGATTCTGGAGACACCTTGGGTCCAGGTGGCAAAATGGAGAAAGTGTATACACTCTGCCCCCTTCTGGCCAACAACAAGGAAAGGCGGGGAATTGCGCTGGATGGAAAACTGAAGCATGAAGACACCAATCTGGCCTCGACTAGCATAATTAAAGAGGGAGTCCTGAAGGAGGTCTTGGGGATTCTGGTGTCCTACAGAATCATGGTAAAGCTCATCATGGGAGGgCTGATGGGACCCGGTGAGATTGGGCTGGAGTTGCCGTTCCAACTGATGCACCCGAAGCCTGAAGCAGTGAGCTGGACGACGATATGGTGTTTGAAGATTTCAAGCGCTCTTTTATGAAGGGCATGACggaggatgaagaagaagggAATATTTCTGCTGGGGAGCCTTAAGAAATCTTTGAGGAACCAGCCACTATCTGGACATTATGGCCAGCCTTCTGGAGATGATAGAGAGAGGAGCGAGATCAAGAGTGATCCACAATGAAGATCAGAAATACACTGAGATGAGTTGTGTTCTTCTCTGTAGCGCACTAGAACAAACACTGGCTCTTGGTCTTTGATCTTTTGTGAGTTGTTTTATGTTGAATCATAGTTTTGGAAAAGTCATCACTTCTTTCCAAATTGAAGTAGGTGAACGGTGTTTGGAGAGTGATTTTAGACCTTTTAGTTAACACTTTCAGTATCTGCAAGATAGCAGATATAATAGATGCCATAATGTAGGATTTATGTCATTATATCAGA
>XM_034314529.1
ATCAGCTGGACCAGGTACGAACATCACGACACACTGAACTGTAACGGAATATTGTAATATGCATACAGAAGTGGAACTATTGGATTATGGGACTTCACTGATTGGCCACAATGAGTCCGAAGAATGTCATCTTTAAGAAAGCGTGCAAAGATAAGTCGgTGGCTGTGTATATGGGGAGACGAGATTTTGTTGATCATGTTGATTCAGTGGATCCAGTGGATGGTGTTGTTCTAATAGACCCTGAGCTTCTGAAAGGCAAAAAAGCATACGTCACCCTGTCCTGTACGTTCCGCTACGGGCGAGACGACATGGATGTGATGGGCATAGCTTTCCGGAGAGACATTTACCTCTCCACCCGGCAGATCTACCCCCCTCTGCAGGACAGGGAGCAGTGCACTCTCACCAAGGGGCAGGAGAAACTGCTACGCAAACTGGGCTACAATGCATACCCCTTTTTCTTTGAATTCCCTGATAATCTGCCCTGCTCCGTGGGACTGCAGCCGGCTCCTACCGATGTGGGCAAGCACTGTGCTGTAGAGTTCGAGGTGAAGGTCTTCAGCGCTGAGAACCTGGACGCTAAAGTCCGCAAGAGGAGTACAGTACGTCTGATGATCCGTAAGGTCCAATACGCTCCGGAGAAATCCGGTCCCGCGCCTTCAGTCTCTGTCACCCGTGACTTCCTCATGTCTGACAAACCTCTGCACGTGGAAGCGAGCCTGCAGAAGCAGACATATTATCATGGTGAGCCGATCAAGGTACAGGTCAACATCAACAATGAGTCCAACAAGAATGTGaagaacattattatttctgTGGATCAAACTGCCAACGTTGTTCTTTACTCCAACGACAGCTACATGAAGTCAGTGGCCATAGAGGATTCTGGAGACACCTTGGGTCCAGGTGGCAAAATGGAGAAAGTGTATACACTCTGCCCCCTTCTGGCCAACAACAAGGAAAGGCGGGGAATTGCGCTGGATGGAAAACTGAAGCATGAAGACACCAATCTGGCCTCGACTAGCATAATTAAAGAGGGAGTCCTGAAGGAGGTCTTGGGGATTCTGGTGTCCTACAGAATCATGGTAAAGCTCATCATGGGAGGgCTGATGGGACCCGGTGAGATTGGGCTGGAGTTGCCGTTCCAACTGATGCACCCGAAGCCTGAAGCAGTGAGAGAAAGTGAGCTGGACGACGATATGGTGTTTGAAGATTTCAAGCGCTCTTTTATGAAGGGCATGACggaggatgaagaagaagggAATATTTCTGCTGGGGAGCCTTAAGAAATCTTTGAGGAACCAGCCACTATCTGGACATTATGGCCAGCCTTCTGGAGATGATAGAGAGAGGAGCGAGATCAAGAGTGATCCACAATGAAGATCAGAAATACACTGAGATGAGTTGTGTTCTTCTCTGTAGCGCACTAGAACAAACACTGGCTCTTGGTCTTTGATCTTTTGTGAGTTGTTTTATGTTGAATCATAGTTTTGGAAAAGTCATCACTTCTTTCCAAATTGAAGTAGGTGAACGGTGTTTGGAGAGTGATTTTAGACCTTTTAGTTAACACTTTCAGTATCTGCAAGATAGCAGATATAATAGATGCCATAATGTAGGATTTATGTCATTATATCAGA

Function

NR:

description
S-arrestin-like

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K19627 SAG; S-arrestin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946292.2 False 1586 mRNA 0.48 16 18547169 18553875
XM_026946293.2 False 1576 mRNA 0.48 15 18547169 18553875
XM_034314529.1 True 1634 mRNA 0.47 16 18547169 18553846

Neighbor

gene id symbol gene type direction distance location
LOC113546415 LOC108280512,LOC108280516 coding downstream 7160 18535113 ~ 18540009 (-)
LOC113546413 LOC108280516,LOC108280512 coding downstream 12567 18527170 ~ 18534602 (-)
LOC113546416 LOC108280513 coding downstream 20187 18521401 ~ 18526982 (-)
wdr33 wdr33,LOC107653512,LOC107705313 coding downstream 30904 18490937 ~ 18516265 (-)
si:ch1073-184j22.2 LOC108280510,LOC108440875 coding downstream 58753 18486279 ~ 18488416 (-)
cldn15la cld15 coding upstream 2459 18556334 ~ 18560556 (-)
sst2 sst2 coding upstream 115159 18669034 ~ 18670613 (-)
LOC113546387 LOC108280703,LOC108436027 coding upstream 117785 18671660 ~ 18692091 (-)
nyap2b LOC108280226 coding upstream 163425 18717300 ~ 18741567 (-)
trnav-aac_21 NA coding upstream 193297 18747172 ~ 18747244 (-)
LOC117599933 NA non-coding downstream 61689 18474224 ~ 18485480 (-)
G322552 NA non-coding downstream 114426 18430135 ~ 18432743 (-)
G322551 NA non-coding downstream 117166 18429659 ~ 18430003 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding downstream 120100 18426733 ~ 18427069 (-)
LOC113546439 NA non-coding downstream 200325 18344046 ~ 18346844 (-)
G322827 NA non-coding upstream 202498 18756373 ~ 18756647 (-)
G322831 NA non-coding upstream 210884 18764759 ~ 18764999 (-)
G322849 NA non-coding upstream 258135 18812010 ~ 18812377 (-)
G322889 NA non-coding upstream 388703 18942578 ~ 18956617 (-)
G323007 NA non-coding upstream 501612 19055487 ~ 19066748 (-)
G322538 NA other downstream 152346 18394249 ~ 18394823 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 675061 17853847 ~ 17872108 (-)
G322080 NA other downstream 1046337 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1573399 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1959353 16564708 ~ 16587816 (-)
G322826 NA other upstream 199897 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 431298 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 449364 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 521125 19075000 ~ 19077917 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 922237 19476112 ~ 19507197 (-)

Expression


Co-expression Network