ccr12a (LOC108280814)


Basic Information

Item Value
gene id ccr12a
gene name LOC108280814
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17427910 ~ 17429725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946294.2
GCTGTTGCACCGAGGTAGCAGTGAGAATTGCCATGGATGACGAACACTATGACGAATATCTGGAGGACTTTTTCAACTCATCCAACACCATAGAAGATATCCAACACGTCATCCACAATGAGACGGTGATACTGTGTGAGAAGACCAATGTGATTCGGTTTGGTGCGGCTTTCATCCCTACGTTCTACTACATGAACTTCTTGCTGAGCCTTGTGGGAAATGGTCTGGTTCTGTGCATCATCTACAAGTATGAGAAGCTCAGTACGGTCACGAACATCTTCCTGCTCAACCTGGTCATCTCGGACCTCCTGTTCGCCTCCACCTTGCCCTTCTGGGCTGTCTACCACCGCACCGAGTGGATATTTGGCCCTGTCCTCTGCAAGCTGGTAGGTAGCTTGTACTCAATCGGCTTTTCCAGCTCCATCCTCTTCCTCACCCTCATGACCTTTGACCGCTACCTGGCTGTGGTCCATGCCATCACGGCCGCCCAGAGCCGCCGGAGGATGTACGCCTTCTCCACGTCTTCTGTCGTCTGGTTTCTCAGTCTCCTCGCTAGCCTTAAAGACATGGTCCTGTACAACGTACGGGACAACAAACCGGGTGGCTGGGTGTGTGAAGAGAGTGGCTACACGTACGAGACCATAGTCAAATGGCAGCTGATGGGTTACTACCAGCAGTTCGGGCTGTTCTTCCTGCTTCCACTGGTGATGGTGTTCTACTGCTATGCCCGAATCACCATTCGAATTGTCTCCACACGCATACAGGAGAAGTGCAGGGCTGTCAAGctcatcttcttcatcatcttcacctTCTTCATCTGCTGGACGCCCTACAATGTGGTCATCCTCCTCAAGGCGCTTCGCTTGTCCTCCAGAGACAGATCATGTGCCGATGACCTGGACTATGCAGAATATGTCACGCGTAACATCGCGTACTTATACTGCTGCATCAGCCCCGTGTTCTACACCTTTGTGGGGAAGAAGTTCCAGAGCCATTTCCGGAAACTTCTAGCTAAGCACATACCGTGTTTGAAGACCACCATACTGTCATCTCAAAGCAGCAGGACCACATCGTTCAGGAGCCCCAATACTGAGTACTATTAACTGCTGAAACTTCACAATGGGAAGAATTTGGAATTTGGcaaatttaaacatttgaataCTGGGCTCTTCTGAACCTCTGAATATTGTGAGGTTCTGACATTATAATATTGGGAGGTTCTTAACTTCTTAATGTTGAGAGCTTCTGAACTACTTAATATTGGAAGGTTCTAAAGTTCTGAATATTGAGAAGTTATGAACTTTGATTATTGGCAGCTTCTGAATGTTTGAATATTGGGAGGTTATGAACTTTTGAATATTGAGAGCTTATGAACTTTTGAATATTGAGAGGTTCTGAACTTCTGAAATTTTTGTATATAGCTCACACACTGATGCTGGCTACAGGGTTTAAGAATGTGAGCATTTTTCAATGTACTGAAATGTTCTCTTTCGGCTCAGGTTTGTCAAGTGTAGTTTGTGTGGTCTGGGCACAGACAATGAGTCTTAAAGTAAAGAATACAGGGAAGTTGGGCAATATGTGTGAAATccattttttctgtctgtgttctcATGCTGTTCTTCTGTTGTTAATTGTAGCAGTTCCATAAATGAGGAGTATTTAGCAGTTTATCAACATTTAACATGAACTTGtctttgtagcattaaattaaCTATTCAGATCTTTAGAAATAAGATGTAAagagttagattttttttctttttgtgttgttAATGCGTCGAAACTGAAACaactgatgaataaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: C-C chemokine receptor type 8-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946294.2 True 1816 mRNA 0.44 1 17427910 17429725

Neighbor

gene id symbol gene type direction distance location
si:ch211-106n13.3 LOC108280813,LOC108433067 coding upstream 646 17400391 ~ 17427264 (+)
exoc3 exoc3,LOC107757821,LOC107656144,LOC107713660 coding upstream 66613 17348910 ~ 17361297 (+)
ahrrb LOC108280895 coding upstream 80426 17323911 ~ 17347484 (+)
mcm6l mcm6l,LOC108280894,LOC108433082,LOC107656140,LOC107713663,LOC107757789 coding upstream 106873 17313082 ~ 17321037 (+)
cul1a LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526 coding upstream 116706 17295164 ~ 17311204 (+)
hecw1b hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981 coding downstream 4193 17433918 ~ 17477821 (+)
gpt2l LOC108280657,LOC108430180,LOC107599855,LOC107708598 coding downstream 57662 17487387 ~ 17507387 (+)
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding downstream 84972 17514697 ~ 17517367 (+)
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding downstream 412724 17842449 ~ 17853870 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding downstream 430586 17860311 ~ 17872029 (+)
G321704 LOC108410862 non-coding upstream 467176 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 534886 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 568332 16792714 ~ 16859578 (+)
G321585 NA non-coding upstream 638303 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 655461 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 95846 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 201489 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 292213 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 424823 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 644604 18074329 ~ 18074748 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 568228 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 634212 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 638942 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 679570 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 1295546 16131335 ~ 16132364 (+)
fuz fuz other downstream 49109 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 140924 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 159347 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 796196 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 964298 18394023 ~ 18430022 (+)

Expression


Co-expression Network