pter (pter,LOC107681810)


Basic Information

Item Value
gene id pter
gene name pter,LOC107681810
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17518043 ~ 17522229 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946295.2
TGCTGACGTCTACACCCTACTTAGTGCAGTATATGTGTACTAGAGAGGTATTTGGATTACAGCCACAATGTGACAACTTGTTGATCTGCAAACTGAAGTCTGCAGGACAAATTTGGCCGTAAGTCATGTCTCCTCTGAGCGGGAAGGTCCAGACGGTCCTGGGCCCGGTGGATCCTGACCACCTGGGTCGCACCATGACCCACGAGCACCTGACCATGAGCTTCGAGTGCTGCTTCGTCCCGCCGGCTCCAGGACGTGAGGACAATTCCTTGGCACCCATCCAGCTGAAGAACATTCACTGGCTCCAGCAGAACCCGTACAGCCACCGCGAGAACCTCCTACTGTGCCAGGAGATCGAGGCAGTGCGAGACGAACTGGTATGCTTCAAGAAGGCTGGAGGAGGCACCATTGTGGAGAACACGACGACGGGTATAACTCGAAATCTGCCCGCTTTACGCCAGCTGGCCAAGGACACAGGGGTCAACATCGTGGCAGGGGCCGGTTACTACGTGGATGTCACTCATTCTGACAAGACGAGGAAGATGACAGTGGAGAAGCTCACTGATGTTATCGTGACCGAGGTGTCGCACGGCGCTGATGGCACAGATATCCGCTGTGGTGTGATTGGAGAGATCGGCACAGGCTGGCCAATCACAGAGAGCGAAAAGAAAGTACTACGTGCCACCGCACATGCTCAGACACAGCTGGGATGTCCGGTTATCATCCACCCGGGCCGGAACCCCGCCGCCCCTGGCGAGATAGTCCGAATCCTTCAGGAGGCTGGAGGAGACGCCTCTAAAACCGTGATGTCTCATCTGGACAGAACCATATTTGACCACGGTGAGTTGCTGGAGTTTGCGAAATTAGGAAGCTATCTTGAGTACGACCTCTTCGGCACAGAAATGCTGGATTACCACTTCAATTTGGACATCGACATGCCTAGTGACAGCCAGAGGGTTCAAACCCTGGCGTTTCTAATTAAAGAGGGCTATGAGGACAGGATCGTCATCTCTCATGATATCCACACCAAGAACCGACTGACCAAATACGGTGGCCACGGATACTCCCACATCCTGAAGAACATCGTCCCCAAAATGCTTTCCAGGGGCATCAGCCAAAAGCAGGTGGACAAGATACTGATAGACAACCCCAAGCAGTGGCTAACCTTTAAATAGATCTGATGTTTAAATCTGATGAAGGGATGATAACCAACCAAAGAGTCATGTGATCATGCAGAAAAAGTGTTGTGCTCTATGAGGAGAAATAACTGCTTGGGATTTTTGCAATAATACCTTTTGACGCTACCTTCTATAATATTCTAGAATCTTCGAATTGATAAAAAGCGATGAATTTTTACAGCTTCAACTACGAcatgattgttgtgtgtgtgaaattcagcGAATTCACAGTGGATGCTTCACCTTGGCTACTCAGTCATTATCCAATTAAGATAAATCCAAATAGATTTCAAGGCTGTTGTTTTGTGTAACTCATCAGGGAAAATGGCTGGATTTGATTCATTAGGAGCACAATTAAAGGAGGGTTTCGGGACATCGTTCAATACTCCAGATAAAATTGAATAGGACGCCTTTTGATTTCAGACAAATACCTTCTGCTAATCATTCTGCCTCAATGGGACGTCACGTCAATGCAATGTCTGGACTGTGattgtgctttttctttttttttttttcatccaatcctaattaaaaatgcaatccAACAATGCGGCATTTATTCGCTATAACAACACAAACTAACTGCAGGGAAATAGCACTTTGCAAAACCTTTAAGGTGACTCGCTGCTGCTTAATTTGGCATATCTAtctatgcatttttaaatttaacagtTAAATATTCACAATTAATAATCAATAGTCCAAATAGCTTGTTATTTGAGATGCAGTTTtggatttttagattttaatgcTCATCGTCTCTTTGCTttcaatatataatattttttgatGGATGATTTGATGATGTATATTcggcatgtttgtgttttttttttttcattttggcaAATGAAGATTGAATTTATAGCACTgtgaaaatgaaacactgaataaacacttacaataaattaaaagaaagaaaggaaataatACAATTTGTAATGATTTGTATTGGTAGaaattctattaaaaaatacttattCACTTGAAA

Function

symbol description
pter Predicted to enable hydrolase activity, acting on ester bonds and zinc ion binding activity. Predicted to act upstream of or within catabolic process. Orthologous to human PTER (phosphotriesterase related).

NR:

description
PREDICTED: phosphotriesterase-related protein

GO:

id name namespace
GO:0009056 catabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07048 PTER, php; phosphotriesterase-related protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946295.2 True 2169 mRNA 0.44 5 17518043 17522229

Neighbor

gene id symbol gene type direction distance location
zcchc2 zcchc2 coding downstream 126144 17361640 ~ 17391899 (-)
viml NA coding downstream 284907 17221945 ~ 17233136 (-)
pde1cb pde1c,pde1cb,LOC108280739,LOC108433077,LOC107757825,LOC107098293 coding downstream 298870 17118184 ~ 17219173 (-)
neurod6b LOC108280937 coding downstream 411216 17104501 ~ 17106827 (-)
trnal-uaa_4 NA coding downstream 436940 17081021 ~ 17081103 (-)
mmp16b LOC108280576,LOC108430178,LOC107552291,LOC107566471 coding upstream 5737 17527966 ~ 17552937 (-)
cables1 cables1,LOC107681774 coding upstream 150905 17673134 ~ 17700867 (-)
gata6 gata6 coding upstream 224390 17746619 ~ 17753965 (-)
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding upstream 263718 17785947 ~ 17841185 (-)
mkxb mkx coding upstream 355114 17877343 ~ 17890855 (-)
G322072 fuz non-coding downstream 36658 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 128124 17359788 ~ 17389919 (-)
G321652 NA non-coding downstream 774028 16742906 ~ 16744015 (-)
G321536 NA non-coding downstream 908486 16608816 ~ 16609557 (-)
LOC113533305 NA non-coding downstream 970542 16546239 ~ 16547501 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding upstream 326923 17849152 ~ 17850372 (-)
G322250 NA non-coding upstream 330404 17852633 ~ 17853837 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding upstream 468535 17990764 ~ 17992868 (-)
LOC113546439 NA non-coding upstream 821817 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 904504 18426733 ~ 18427069 (-)
G322080 NA other downstream 17211 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 544273 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 930227 16564708 ~ 16587816 (-)
G321462 NA other downstream 1151039 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 1793687 15687082 ~ 15724356 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 331618 17853847 ~ 17872108 (-)
G322538 NA other upstream 872020 18394249 ~ 18394823 (-)
G322826 NA other upstream 1231543 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 1462944 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 1481010 19003239 ~ 19006379 (-)

Expression


Co-expression Network