gnb4a (gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752)


Basic Information

Item Value
gene id gnb4a
gene name gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18435349 ~ 18449078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946296.2
CCATGCTCCAATATCAGTATGGGTGTGGTGGTAATCCCGGTATGAATTGGTCAGATTCGCGTCAAAATTTGGCGCCTGCGGCCTTGTTGTTTTTCTGGACATAACaaacgacacacacacaaaaatgagcgaattacatttttaaagcaatCTACTAAAGCATGACTAGGAACTGACGGAAGGTCTGGCGGATCTTGAGAGCTATCAACAGTAGGCCTGCGTGTTTATCAGCGTGAGAAGTGAAGCGGGAGTGAAACCCTCAGCGGAGGATCATGAGCGAGCTGGAGCAGTTGCGGCAGGAGGCCGAGCAGCTGCGCAATCAGATCCGAGATGCCAGGAAAGCGTGCAGCGATTCCAGTTTGTCCCAGATCACAGCTGGGCTGGACTCGGTGGGGAGGATCCAGATGCGCACGAGACGAACCCTGCGGGGCCATTTAGCCAAAATCTACGCCATGCACTGGGCTACTGATTCCAGgCTACTAGTGAGCGCATCTCAAGATGGAAAACTCATCATATGGGACAGCTACACAACAAACAAGATCCACGCCATTCCTCTGCGCTCGTCCTGGGTCATGACGTGTGCCTACGCTCCATCTGGGAACTACGTGGCCTGCGGAGGCCTGGACAACATTTGCTCCATCTACAGCCTGAAGACCCGTGAGGGCAACGTCAGGGTCACCAGAGAACTACCCGGGCACACAGGTTATTTGTCGTGCTGTCGTTTCTTGGATGATAGCCAGATAGTCACCAGCTCTGGAGACACCACATGTGCTCTGTGGGACATAGAGACCGGTCAGCAGGCCACCATCTTCTCCGGCCACAGCGGAGACGTGATGAGTCTCTCTCTGAGCCCGGACTCCAGGAGCTTCGTATCGGGAGCCTGCGATGCCACCTCCAAGCTCTGGGACATCCGAGACGGCATGTGCAGGCAGTCCTTTACCGGTCACGTCTCCGACATCAACGCCGTTTGTTTCTTCCCAAATGGGAATGCATTTGCAACCGGCTCAGACGACGCCACGTGTCGCCTGTTCGATCTGCGTGCTGATCAGGAGCTCATGATGTACTCTCACGACAACATCATCTGCGGCATCACGTCTGTGGCTTTCTCTAAGAGCGGCCGCCTGCTCCTCGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACGCTGAAGGGAGAACGCGCAGGCGTTTTGGCCGGACACGACAACAGGGTGAGTTGTTTAGGCGTGACCAACGACGGCATGGCTGTGGCCACTGGCTCATGGGACAGCTTCCTCAGGATATGGAACTGACCTGATTGGGCAGGACT
>XM_026946297.2
CATGCTCCAATATCAGTATGGGTGTGGTGGTAATCCCGGTATGAATTGGTCAGATTCGCGTCAAAATTTGGCGCCTGCGGCCTTGTTGTTTTTCTGGACATAACaaacgacacacacacaaaaatgagcgaattacatttttaaagcaatCTACTAAAGCATGACTAGGAACTGACGGAAGGTCTGGCGGATCTTGAGAGCTATCAACAGCCTGCGTGTTTATCAGCGTGAGAAGTGAAGCGGGAGTGAAACCCTCAGCGGAGGATCATGAGCGAGCTGGAGCAGTTGCGGCAGGAGGCCGAGCAGCTGCGCAATCAGATCCGAGATGCCAGGAAAGCGTGCAGCGATTCCAGTTTGTCCCAGATCACAGCTGGGCTGGACTCGGTGGGGAGGATCCAGATGCGCACGAGACGAACCCTGCGGGGCCATTTAGCCAAAATCTACGCCATGCACTGGGCTACTGATTCCAGgCTACTAGTGAGCGCATCTCAAGATGGAAAACTCATCATATGGGACAGCTACACAACAAACAAGATCCACGCCATTCCTCTGCGCTCGTCCTGGGTCATGACGTGTGCCTACGCTCCATCTGGGAACTACGTGGCCTGCGGAGGCCTGGACAACATTTGCTCCATCTACAGCCTGAAGACCCGTGAGGGCAACGTCAGGGTCACCAGAGAACTACCCGGGCACACAGGTTATTTGTCGTGCTGTCGTTTCTTGGATGATAGCCAGATAGTCACCAGCTCTGGAGACACCACATGTGCTCTGTGGGACATAGAGACCGGTCAGCAGGCCACCATCTTCTCCGGCCACAGCGGAGACGTGATGAGTCTCTCTCTGAGCCCGGACTCCAGGAGCTTCGTATCGGGAGCCTGCGATGCCACCTCCAAGCTCTGGGACATCCGAGACGGCATGTGCAGGCAGTCCTTTACCGGTCACGTCTCCGACATCAACGCCGTTTGTTTCTTCCCAAATGGGAATGCATTTGCAACCGGCTCAGACGACGCCACGTGTCGCCTGTTCGATCTGCGTGCTGATCAGGAGCTCATGATGTACTCTCACGACAACATCATCTGCGGCATCACGTCTGTGGCTTTCTCTAAGAGCGGCCGCCTGCTCCTCGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACGCTGAAGGGAGAACGCGCAGGCGTTTTGGCCGGACACGACAACAGGGTGAGTTGTTTAGGCGTGACCAACGACGGCATGGCTGTGGCCACTGGCTCATGGGACAGCTTCCTCAGGATATGGAACTGACCTGATTGGGCAGGACTGGAGATTGATGCGCcactctgaccaatcacagtcacTGTAGCGGCCTGCTTCCACAGAGGAACCCTTTCCCCTTCTTTTATCCTTCCTTTTCCAGGTGATCTTCTCTTACTAGATCCTTTCCCTTTGGCCACGGCGCCAGTCCCACTTCCGGTTTCCAGAGGACGAGCGAGGCAGAGCTCTggactctctatctctctcactttatcttttcctctctatctgtctttctctctgtctctgtctatggCCTCCTAATCTGAAAATCTTAAAGAATAGACTGTCGTGTATATACCATTTGCTATTCTCTGTGCTTGTATGTGAAATGTACACACTTGCAGTGTTTGGATGTTGTGCGAAATTTTTACGGTGGGTGTGTTGGTCGTCCTGATCGTGTTTTCCTTTTCCCGATTACGGATTTTTCTATGATTTCATGTAGTTCTCGCcggcacacacacaacacacacacacacacacacacacacacacacacacgcagaggcACTGCCAGCAGTTTGGACTCCTCCATGAACAAGCTGACCCGCTGTGCGGTTTTTAGGTGCTGAAGTCGACCCGTGCCGCTCATGGGTCTGTGTTAGATGTTTGAAGTGTCAGTTTAGGTGAAGGAGCACGTGAGGTGTGTTGGAGAGCATCATATGATACTTTAATGCCTTCGTGATATGGTCATTCAGGGCATTAGTCTGCCTTGGAGCCTCCTGCTCTGCCATTGTGCCCATCACGTGTGGATAGTATTCGCTCGCCACTCCATCGTGTTGAAGGATTTAACATTACAGACACTTTAGATTCTGTCTGTATTACACTTGTAGTACCAGTATTGGTCATGTATGGCAGAAAAAAGAACCTCATGAGTAGGCGATATGGGTGAtaagatattgatattgtgatatattaacatcatgttggtgtgtttttgaCTCCATTGTTAATCACAATAATGTTTCATTGGCACTTTGTTAGCAAAACTAAAAAGCATGTACAtactgtgtaaaatgtgtgatatttttaccttataccacagtacacaGAACATCTAATCCAAGCCTaataaaaaatggattaaaaagtgtgCTATTTTAACAAAGATCAGTGTCTAATATGGCTGTTTCCTGTgaggagatgttcatttaacgtttatggaaggagcctccagtgttagcgctttgtaacagtcagttcaTGAGAAagtcatcaggacagaggagtttatctttctctaacatgacaaactgcttttttttcttattaaggtctgaagaaagaggagaaaagagtggccggtgagggaacaactgtttgtagctgctataacgtcttgtggaactagcttgtttcatggacattccacaacattcaatTGAACTAGAAACGGATTAAAAgtgacagtaactctgcatGCCAACTAGCAGTTCAGTGAGAtagtgttataaaaataatgcagatagaTTATATGATCCACCAGGTACAACGAGGTACAGGAAAACTGGCATCACTGAAGGCTTTTTTGTTTAAGCTCTACGAAAATAGTTTAacatgcaaaagagagagaaaatgaaccATTTGATATGAAAATCAGCTACTTATAATTGTGCACAGCAGCGAAGACTTTGAGTGTTGACGTACTGACAATTTATAgacaattgtattttttttttttttcacatttattaatgatatgcagctgcactactgtcagagctgttgttctagaaaatgaatcaacaccttctgacttgTCAGATTGGAGGAtttaacatcactgtggtataagtcaCAATATCTGTATCATATCGCCCAATTCCAGTGCCAAATGTTAAAAAACGCAAAATGCTAAGGACAGTGTTGTATTTTGAGGTGCAACTGTGAAACTGTAGCTTGCGTAGAGAACGGTATTAACACACCACATAATGATAAATGTTCACGTATCCACTTATAACCGATCCGTGTCACGtgaaggatgagagagagagagcaggatcTTTACGGTTTTCTACGACCACAAGcttcaatgtgtgtgtttttgtttttgttttttttttttcccctcacccaAATGTGAGATGATGTGAGCTTTGGTATAAAATGTCACGGACACTCCTTCCTGTGTCGAGAGAAGAAGCCTTAACTGTTGTAGTTCACTTGAAAGTTGACTTAATTTCATGCCAGTTAATAGAAATGAAGGCTGATGTTTTTCCATGAGTCCCCCTTTTCCATGGAGGCTTTACACCACActtgagccttttttttttttaaatatatattttgttgtttttgcctACAGTATTGAGTCGGTTTTGTtgtattaaatcatttaaatga

Function

symbol description
gnb4 Predicted to enable signaling receptor complex adaptor activity. Involved in substantia nigra development. Located in extracellular exosome and lysosomal membrane. Implicated in Charcot-Marie-Tooth disease dominant intermediate F.

NR:

description
PREDICTED: guanine nucleotide-binding protein subunit beta-4

GO: NA

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946296.2 False 1312 mRNA 0.55 10 18435349 18446743
XM_026946297.2 True 3642 mRNA 0.45 10 18435350 18449078

Neighbor

gene id symbol gene type direction distance location
bambib LOC108280666,LOC108430169 coding upstream 440671 17990725 ~ 17994678 (+)
wacb LOC108280665 coding upstream 456227 17965893 ~ 17979122 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding upstream 563320 17860311 ~ 17872029 (+)
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding upstream 581479 17842449 ~ 17853870 (+)
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding upstream 917982 17514697 ~ 17517367 (+)
si:ch1073-184j22.1 LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312 coding downstream 5058 18454136 ~ 18477637 (+)
sft2d3 sft2d3 coding downstream 39549 18488627 ~ 18489656 (+)
dusp28 dusp28 coding downstream 68850 18517928 ~ 18520990 (+)
LOC113546359 LOC108280706 coding downstream 94827 18543905 ~ 18546163 (+)
crfb16 NA coding downstream 113020 18562098 ~ 18572503 (+)
G322446 NA non-coding upstream 2647 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 61466 18370727 ~ 18373883 (+)
G322405 NA non-coding upstream 91859 18338329 ~ 18343490 (+)
G322398 NA non-coding upstream 203886 18229395 ~ 18231463 (+)
G322365 NA non-coding upstream 235640 18198840 ~ 18199709 (+)
G322696 NA non-coding downstream 266317 18715395 ~ 18720439 (+)
G322738 NA non-coding downstream 316114 18765192 ~ 18765602 (+)
G322744 NA non-coding downstream 362027 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 363425 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 365536 18814614 ~ 18814817 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 5327 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 208116 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 769136 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 798740 17570649 ~ 17636609 (+)
fuz fuz other upstream 951672 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 366931 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 495620 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 755580 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 864782 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1680175 20129253 ~ 20281067 (+)

Expression


Co-expression Network