mkxb (mkx)


Basic Information

Item Value
gene id mkxb
gene name mkx
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17877343 ~ 17890855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946298.2
GCTTCTTATTCAGGTTCCGGGGCGGTGTCGCTGTACGCGCGCGGCGTGTCGGTGTGGCGCGAGCCTCCAGTAGTCGCTCAGTAGTCACCGGGACGCgcgtgcgagagagagagagagtgagagagagagagagagagagaggggcgtACAAGTGAGTAGCGCGCGCCACCGGAATCGCCATTAGGATTTCCGAGCTGATGGAACACGAGCAGGAGGAGAGAATTTGGGACTTATCCGTGGACTCACACCCTCACTAACTTCCAAACTTGATGTGAGCGGACACCTCTGACGATGAGTGCGCTGGTGTTCAGTAAACTGGACGAGCGTCTGAGTTTTGAGGAGACTGGAAAAGCCGTAGAGAGGAAGAGCCTGAGTTATCTAGAAGTGCTCAATGGACAGCATGCAGATTCACTGACCAAGAGGATGGACGGAGCGCTGCAGCACAGGAGACAGAGTGGAGGGAAGGTGCGGCACAAGCGTCAGGCTCTTCAGGACATGGCCAGGCCGCTCAAACAGTGGCTGTATAAACACAGGGACAACCCGTATCCCACCAAAACCGAGAAGATCCTGCTCGCCCTCGGCTCCCATATGACCCTGGTTCAGGTATCAAACTGGTTCGCTAATGCACGCCGCAGGCTGAAGAACACGGTGCGACAACCCGACCTGAGCTGGGCTCTACGCATCAAACTGTACAACAAATACGTTCAGGGAAACGCAGAGAGGCTCAGCATCAGCAGTGATGACTCAGCTTCTGAAgATGGTGAGAACCCTCTCCAGATGCAGCCCAGCGAATCTGAGTCCAGCCAACCCACACACAAGAGCGTGATCCAGGAGAGCCGAGGCCTCGATTACGTCTCTCCGCCAAAGTACAAGAGCAGTTTGCTGAACCGCTACCTCAACGACTCCCTGCGGCATGTCATGGCCTCCAACACAGACTCGCGCAAGAGGAACCACTCGGGCTCCTTCAGCTCCAACGAGTATGATGACGAGCTGCTGTCGCCTTCATCGTCCGAAACAGAGGCCAACTTCACCTACCGCACAGAATCCATGGACTGTGGCTCCCAGTTCCATGATGGGTGCAATCCTAAAGGAGGCATACGAGGAAAAAGCGCTACATACTGGAACGAGCTCCATGCTGCCATGGCATTGACTAACCTGGCTCAGAGCGAGGAGGCTACGCCTGCAGGCACCACCAGCTGCATCATCCAGAAATCCTCGCACATAGCGGAGATAAAAACTGTCAAAGTGCCGATCGTTCCTCCTCAATAGTACTCGGCTGACTCGGAGGTCTGAGGCAGAGGCAGACGGTCAGCAAGAGACTTCTTCAAGACTTGAACGTGGACGTCAAATCATTACGCTAGTTTTGGAAATGATCAATTGCAGTATTTTATAAGGACGTGATTTGGATATTTCACCGATGTGCCTAATGACTAATGACATCCAGACTGTACACAAACaccaacaggaagtgatgtctcATGGATCGAAGTTTGGTTTGGACTGTTAAAGCCACCGAATTTCTGATTTTAAATCATATAGCAATGTccacttgttttgtttttttgttttttttaaatatcattttcattctgaCAGGTTTTGCAATCCTCAGACCGTCCTGGTCGAAAcgtaatatattcatattcatgtttacCACTTTTCTAAGTTAAGTGTAATGTTTACTGAGGCAGGATTATTGTCCAACGATTATTGCTCAACAGTtgtttctcattattttttattatataggTACAGCCATAATAATGTTGCCTTGTGTATCTGATGATTGATGAGCCCCCGGGGAAATAATGGCCAGGTTATATCGCCTCACCCTATTACAGACCACATTTATGAAAATCTTTTCTTGAACTCTCACTGACCCATCTGTGAGTAATCAGCTTTCTGTGGATCACTGACGGTGACTCAGATCATCGTCACTCATGGAGTCCTGACCAGATTCGCTGCTTTCAAAATATTGTCTCGGAAATATTTTCCTCTTTCCAGCATTTCCCATTTCAATAAAACCAGATGACCTGA

Function

symbol description
mkx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in cell development; muscle organ development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including collagen fibril organization; regulation of gene expression; and tendon development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: homeobox protein Mohawk-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24890 MKX; homeobox protein Mohawk

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946298.2 True 2037 mRNA 0.49 7 17877343 17890855

Neighbor

gene id symbol gene type direction distance location
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding downstream 36158 17785947 ~ 17841185 (-)
gata6 gata6 coding downstream 123378 17746619 ~ 17753965 (-)
cables1 cables1,LOC107681774 coding downstream 176476 17673134 ~ 17700867 (-)
mmp16b LOC108280576,LOC108430178,LOC107552291,LOC107566471 coding downstream 324406 17527966 ~ 17552937 (-)
pter pter,LOC107681810 coding downstream 355114 17518043 ~ 17522229 (-)
LOC113546406 LOC108280815 coding upstream 19540 17910395 ~ 17964294 (-)
tmtopsa tmtopsa,LOC108280164,LOC108430153 coding upstream 182279 18073134 ~ 18104805 (-)
tnk2b tnk2 coding upstream 241101 18131956 ~ 18185148 (-)
LOC113546402 LOC108280489 coding upstream 295053 18185908 ~ 18194006 (-)
LOC113546400 LOC108280488 coding upstream 304064 18194919 ~ 18211462 (-)
G322250 NA non-coding downstream 23506 17852633 ~ 17853837 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding downstream 26971 17849152 ~ 17850372 (-)
G322072 fuz non-coding downstream 395958 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 487424 17359788 ~ 17389919 (-)
G321652 NA non-coding downstream 1133328 16742906 ~ 16744015 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding upstream 99909 17990764 ~ 17992868 (-)
LOC113546439 NA non-coding upstream 453191 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 535878 18426733 ~ 18427069 (-)
G322551 NA non-coding upstream 538804 18429659 ~ 18430003 (-)
G322552 NA non-coding upstream 539280 18430135 ~ 18432743 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 5235 17853847 ~ 17872108 (-)
G322080 NA other downstream 376511 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 903573 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1289527 16564708 ~ 16587816 (-)
G321462 NA other downstream 1510339 16357574 ~ 16367004 (-)
G322538 NA other upstream 503394 18394249 ~ 18394823 (-)
G322826 NA other upstream 862917 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 1094318 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 1112384 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 1184145 19075000 ~ 19077917 (-)

Expression


Co-expression Network