crfb16


Basic Information

Item Value
gene id crfb16
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18562098 ~ 18572503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946299.2
cctcacacacacagagacacaaagtgCTTCTGTCACAAATCTCCTTTagagagacaacacacacattctgctgGATGTTCTGGATTTATGGTGGAACTTTTAGTGGTCTAAGGGTGAACTTGGCGGGAGGTCTCTGGGGCCACTGAGAGGGTTTGGAGGTTATGTTCCAGACGAGGAGTTTGCTCAAGACTGTGACCTCTGCATTCATCATTGCCACTCTCAGCCATGCTGCTCTGCTGCCCACATCACTGAACATCTCGATACAGTCGGAGAACATGaggcacatcctgaagtggaGCTCTCTGCGGGAAGTCTGCTGCTCCGTTAACTACACTGTAAAGTATCAGGgTGAGTTTGAATACATGAAGAATGACAGCTGGCTGGACGAATACTCCTGCGACAAGATCGTCCATACCGAGTGTGACATGACCCTCGCCCTGAGCTCGGACTCTGATTACAACATCAGTGTGCTAGCGCGGTGTGACAAATCAACACTGTGGGCTCAGCTCCCGAAGACCTTCAATcgcagagacaCTGTGCTGCTTGCTCCGAACATGAGCGTGAATCCAAGGGTAGGCCAAATTGAAGTTTACTTCGCTGAGATCCAAAACCATATCAACATAAACCTTAAAATTTGGAAGAAAGGGAATGAGCAGAATCCTGTTAGTAAGGAGATAACAAAAATTGGTCACAATGgtcaaacattttattatgatgCCTGGCTGGGTGGAGGAACATACTGTCTGAAAGCAGAGGCTATCCTGGACATCACCAAAAAGACCagcagcacagacacacactgcgTCCCTGTCATGGagCCCTCGCTGGTCATACCGCTCACTGTGGGCGTCGCTGTGGCATTAACCCTCGTCGTGGCTTTGATTCTGGGGTTGACAACCCCGCGCTGTAGCCTCTGGCTCCGGAGGTCCATGCGTAATAATGAGCCACTGCCTAAGGCGCTGCTTGGCTGGCCAAAAAGCACCCCGATATTTTCCTCCAAGGTCCTGCTGGAGCCAACACACTCCGTGTTACTGCTAGACCCATCAGAAGAACAGGACAGAAAGTCGGAGACGAAGGCAACGTGTGATGAAGAGATGAGATGAGTCCATGAGATGAGTGACACCATGAACCTGTTCAATGTGAAACAACGAAGGAGTCGATGGTTAAACATTTATGAAGTAATAAGCCATGATTTAAATAGCATGAAGGATCTGTTTactgattcatttcatttaactgattcacaaaaacaacattctgtgatataatttgtatttattgctATGCATCATCTGGTGACATCACTGAGGAACTGAACGTGGTTTGAGGCAGagatttacagaaaagattttgaAGGCTCCTGTGAGTCCTCAAAGATCGTGAGTTcgaatcctgacgatgccacagccaatCATGGCCTGGAGCCAAGGAAGCAAAAATTGCCtgtgctctctgagtgggaggaACATATTCTCTCtccactgtcaatcacagcaacactagccagtCGTGGCTGTCTGTGAGCTcttgtatgcagaagagggttgATAGCGCTTTCCTTGTGTTATGCTGCTCTGTGATGTAGCAAAAAGATGCAGGTGGCTGGCTTCACAGCTTGGAAGAACCATGTGCTAACCCacaccctccccagttggtagctgccTTGCGATGGGGGGAGCTGACTGGTGGGAAGGAATTGGGAGAAAAAGATTTTGGATGAGACGGAGAgattacattatacagtacctccagtgcaaaactaaagaagcaaactaaAGACaccaatcacatcttgactgatTGACCACATTTGGGATTTAGGGACATTTGGcatcagttcaaaagttatgttaatattaatgaggGGAAAATTCATAGACAATTTAACTTGCTTAACTTGATTTTCTGGaccaaataaaattttatatatatgtctTATTTCTGTTGTATAAACTGTTGTATAAACTGAAGCTACATTTCATTACTGAAACACCAAGTCTTCTGACCAACTTATCATTTTTCtgggggtgtgtttgtgttttgtactGGTACTGAATTTCTTAGATTGC

Function

NR:

description
interleukin-20 receptor subunit beta-like

GO: NA

KEGG:

id description
K05137 IL20RB; interleukin 20 receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946299.2 True 2069 mRNA 0.46 7 18562098 18572503

Neighbor

gene id symbol gene type direction distance location
LOC113546359 LOC108280706 coding upstream 15935 18543905 ~ 18546163 (+)
dusp28 dusp28 coding upstream 41108 18517928 ~ 18520990 (+)
sft2d3 sft2d3 coding upstream 72442 18488627 ~ 18489656 (+)
si:ch1073-184j22.1 LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312 coding upstream 84461 18454136 ~ 18477637 (+)
gnb4a gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752 coding upstream 113020 18435349 ~ 18449078 (+)
mb21d2 mb21d2,LOC107705301,LOC107572431,LOC107673980 coding downstream 1877 18574380 ~ 18582220 (+)
fgf12a fgf12a,fgf12,LOC108280711,LOC108436038,LOC106568709,LOC105006885,LOC106598267,LOC103365152,LOC107549734 coding downstream 12560 18585063 ~ 18637704 (+)
cwc25 cwc25,LOC102792885,LOC101487873 coding downstream 90655 18663158 ~ 18667572 (+)
LOC113546386 LOC108280704 coding downstream 119689 18692192 ~ 18716552 (+)
mffb LOC108280720 coding downstream 175024 18747527 ~ 18754060 (+)
G322462 NA non-coding upstream 122232 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 129396 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 188215 18370727 ~ 18373883 (+)
G322405 NA non-coding upstream 218608 18338329 ~ 18343490 (+)
G322398 NA non-coding upstream 330635 18229395 ~ 18231463 (+)
G322696 NA non-coding downstream 142892 18715395 ~ 18720439 (+)
G322738 NA non-coding downstream 192689 18765192 ~ 18765602 (+)
G322744 NA non-coding downstream 238602 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 240000 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 242111 18814614 ~ 18814817 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 132076 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 334865 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 895885 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 925489 17570649 ~ 17636609 (+)
fuz fuz other upstream 1078421 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 243506 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 372195 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 632155 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 741357 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1556750 20129253 ~ 20281067 (+)

Expression


Co-expression Network