si:ch1073-184j22.1 (LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312)


Basic Information

Item Value
gene id si:ch1073-184j22.1
gene name LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18454136 ~ 18477637 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946301.2
AGATTGTGTGGAAGGCAAATTTCCCGCTAAATGTCATCATCCTTGATAGCAAGGTTCAGCATATCTGACATGCACATTTCTGCTCCACCCAAATGTCCTTCAGTGTTTGGAAACACAGGATGGATTGGTTTTGCATTCTAAAATAATAGAGAATGGACCAGTTAAAGCGAATACCATCTGTTCTTGGTTTGCTCTTTTTTGATATTCATCTGAAACAAATGcttttaaagaaatgattcaCCTAAGTTATATCTTTCTGGAGAAAATATGCAGTAGAAATTATATTAGGCAACTTTTTGAAGATCAAACAATAGGCACTAGGACCCAGAGGCCCATGAAAGAGGGCAAAACAAAGCTGTCAGAAGCAAAGGAATGAGCCAGACACAGGACCGGCAGGAGAAAGAGAGCCGGGAATGCTCAGACAGGGTGATAGGATGAGGGTAGGACAAGGGTGAGACGAGGGAGAGATGAGGCATCAGGGTGGCTGTAGAGAGACAAAGTGACAGATTGAGATTCACAAGCAGATAAGCAACAGAAGGAGGAGTGAAGGGATGAAAGGAGGAGGGGCCTGAGCTGCTCAGGAGCTTAAAAACAGCAGAGCGCGAAAGGGAACCTTCATAACACAGAGTGAACGTGGAGTAAACTGAAGGCACTCGTTTGGAGGAATAAATCAGCATCACTCGAGGGCCTATGGAGCGGAAAGGAACCGAGCAAGCAAAGCAACAGAGGGACTTTAAGTACTATTTCTTCATGAGAAGCATCAATCCTTTGAGGAATTGAGGATCCATCTTCATATCAACTATCAACCTGTCCTTTGAGAAACCTGTCCTGTAAAACACTACAAGAAGCTCAAAGATCACTCTTCACTTCCCGGGAGTGGGATGGGACCTGAACACTGAGGATCTGTGAGAAATCACTGCCCTCTGACCCTGCACCATGTTGCCCTGGCATGGGCCGAAAGGGCCGTTCCTGCCCCTGGTCCTGAGCCTCCTACTCACCACCTGCGCTGGACAGGACAGCCTAGAGGAACTAGAGCTTGATGATGAGAGCAACTCCGTGAGCACAGAGAGTCCTGAGACTGTGTCTTCAGATATGGACATAGTTGATCCTCATAGGACCTGGATAGCCTTCAGGGATAACTCAAATAAGGGTGGAAACAAGAAgcccaaacaaaataaaagaatatcaAAGCATGGCCTGCCTGGTCCTCCGGGCCCTCCCGGACCCCAGGGGCCTCCTGGTCCTCCTGGCCCACTGATGCCCAACCAGGACGAGATATTGGAGGACCTCCAGCTAAAGCTGAAAgAGATGGTGGGCAGCCAGTGTGTGCTCTGTGAACAGCCCCCCCGCGTGGCCACAGCCTTCCACAGCCACCTGCGCCGCAATCTGCTGGTCCAGAGACGGAGTCTACAGGAGCTCCAGCCTTTCAGCAGCCCTTCAGACATGGAGCAGTTTCACCAGAGAGGTCAGGGCTTCAACACCAGCAGCGGCCGCTACACCGCTCCGGTGTCGGGGTTCTACCAGCTCACCGCCAGCCTGGTGCTGGAATCCAGTGAGACTCAGAAAAGGACCCAGGCACGACAAAAAGACAGTGTGAAGGCCTCCATATGTATCGAGTCTCTCTGTCAGAGCAACATGTCTCTGGAGACGGTAACAGGCGTGAGTCCTGCAGGAGGAGTGTTCAGCATTCTGCTGACAGGAACCTTATACCTGCAGgcTGGCGAGTACGTGTCTATTCTAATTGACAACGGAACAGGATCAGCACTAACAGTCCTCCAAGACAGCTTATTTTCTGGGATCCTTCTTGGAATATAAGCCCACAAAGACAAACCACACAcagtaagacagacagagagagagaggagacatacacacgcacagacacagacagagacacatgtATGTAGACATACATGCagtcagacagagacacacagacacaggaaggGAGAGAGGCACACACAAAAGGGCACAtagacatacactcactggtAACTTTAACAGGAATACCTGCATACCTGCCTATTTATGTAGTTATCcaagcagccaatcatgtggcagcagcacaatgtaagTCATCTGTAGTAACTcagtcactctttacaactgtggtgagcagaaaagcatctcagaaagcacaaggTGGAttgactaca
>XM_026946302.2
cattaattaattaactcaCGCAGCAGCCTCGACGTTAGGCTAACATGCGCGTGTGCTAATACAGATGCTAGGCTAATAAGCTAAATAACTTGTCacctatataaatatatgcatttattattattttcacgaacatctttttattaatttgttgcTTATTACACGAGCTGGCGTCTTAAATACgtgaaaatagaccaaaatGGATAAGGAAGTTGTACTTGCTGAGTTTGCTAAAGATGCTACACAGCAAACATGgcTCTTTTCCAGAAAGAAGAGCTCGAGGCTCTAGAGTCCACAGGTCTCTGGCACTCAGAGCCTCGATGGCAGACATGAAGATGCGTTCAGGCGCCAGAGTCGAGGGCCTCCACCTTCAGCTCGTCTACTCAAGAAACTGACGCAGCCCTCCATGTGCGGCTTCCACACCTGAGTACTATTTCTTCATGAGAAGCATCAATCCTTTGAGGAATTGAGGATCCATCTTCATATCAACTATCAACCTGTCCTTTGAGAAACCTGTCCTGTAAAACACTACAAGAAGCTCAAAGATCACTCTTCACTTCCCGGGAGTGGGATGGGACCTGAACACTGAGGATCTGTGAGAAATCACTGCCCTCTGACCCTGCACCATGTTGCCCTGGCATGGGCCGAAAGGGCCGTTCCTGCCCCTGGTCCTGAGCCTCCTACTCACCACCTGCGCTGGACAGGACAGCCTAGAGGAACTAGAGCTTGATGATGAGAGCAACTCCGTGAGCACAGAGAGTCCTGAGACTGTGTCTTCAGATATGGACATAGTTGATCCTCATAGGACCTGGATAGCCTTCAGGGATAACTCAAATAAGGGTGGAAACAAGAAgcccaaacaaaataaaagaatatcaAAGCATGGCCTGCCTGGTCCTCCGGGCCCTCCCGGACCCCAGGGGCCTCCTGGTCCTCCTGGCCCACTGATGCCCAACCAGGACGAGATATTGGAGGACCTCCAGCTAAAGCTGAAAgAGATGGTGGGCAGCCAGTGTGTGCTCTGTGAACAGCCCCCCCGCGTGGCCACAGCCTTCCACAGCCACCTGCGCCGCAATCTGCTGGTCCAGAGACGGAGTCTACAGGAGCTCCAGCCTTTCAGCAGCCCTTCAGACATGGAGCAGTTTCACCAGAGAGGTCAGGGCTTCAACACCAGCAGCGGCCGCTACACCGCTCCGGTGTCGGGGTTCTACCAGCTCACCGCCAGCCTGGTGCTGGAATCCAGTGAGACTCAGAAAAGGACCCAGGCACGACAAAAAGACAGTGTGAAGGCCTCCATATGTATCGAGTCTCTCTGTCAGAGCAACATGTCTCTGGAGACGGTAACAGGCGTGAGTCCTGCAGGAGGAGTGTTCAGCATTCTGCTGACAGGAACCTTATACCTGCAGgcTGGCGAGTACGTGTCTATTCTAATTGACAACGGAACAGGATCAGCACTAACAGTCCTCCAAGACAGCTTATTTTCTGGGATCCTTCTTGGAATATAAGCCCACAAAGACAAACCACACAcagtaagacagacagagagagagaggagacatacacacgcacagacacagacagagacacatgtATGTAGACATACATGCagtcagacagagacacacagacacaggaaggGAGAGAGGCACACACAAAAGGGCACAtagacatacactcactggtAACTTTAACAGGAATACCTGCATACCTGCCTATTTATGTAGTTATCcaagcagccaatcatgtggcagcagcacaatgtaagTCATCTGTAGTAACTcagtcactctttacaactgtggtgagcagaaaagcatctcagaaagcacaaggTGGAttgactaca

Function

NR:

description
erythroferrone-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946301.2 True 2156 mRNA 0.49 9 18463815 18477637
XM_026946302.2 False 1846 mRNA 0.50 10 18454136 18477637

Neighbor

gene id symbol gene type direction distance location
gnb4a gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752 coding upstream 5058 18435349 ~ 18449078 (+)
bambib LOC108280666,LOC108430169 coding upstream 459458 17990725 ~ 17994678 (+)
wacb LOC108280665 coding upstream 475014 17965893 ~ 17979122 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding upstream 582107 17860311 ~ 17872029 (+)
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding upstream 600266 17842449 ~ 17853870 (+)
sft2d3 sft2d3 coding downstream 10990 18488627 ~ 18489656 (+)
dusp28 dusp28 coding downstream 40291 18517928 ~ 18520990 (+)
LOC113546359 LOC108280706 coding downstream 66268 18543905 ~ 18546163 (+)
crfb16 NA coding downstream 84461 18562098 ~ 18572503 (+)
mb21d2 mb21d2,LOC107705301,LOC107572431,LOC107673980 coding downstream 96743 18574380 ~ 18582220 (+)
G322462 NA non-coding upstream 14270 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 21434 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 80253 18370727 ~ 18373883 (+)
G322405 NA non-coding upstream 110646 18338329 ~ 18343490 (+)
G322398 NA non-coding upstream 222673 18229395 ~ 18231463 (+)
G322696 NA non-coding downstream 237758 18715395 ~ 18720439 (+)
G322738 NA non-coding downstream 287555 18765192 ~ 18765602 (+)
G322744 NA non-coding downstream 333468 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 334866 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 336977 18814614 ~ 18814817 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 24114 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 226903 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 787923 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 817527 17570649 ~ 17636609 (+)
fuz fuz other upstream 970459 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 338372 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 467061 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 727021 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 836223 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1651616 20129253 ~ 20281067 (+)

Expression


Co-expression Network