bambib (LOC108280666,LOC108430169)


Basic Information

Item Value
gene id bambib
gene name LOC108280666,LOC108430169
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17990725 ~ 17994678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946304.2
TGCAGTCTCAGCTCAGGGCTGTGAGACTTCAGATGATCGGTGGAGTGTCAGTGTTTCTGTTTGGACTTTTATTCTCAAAAAACATCAgcaccaaaaagaaaaagagaaaaaaagcaaaacaaaacaagccaAGCATTGGAATTTATCTTTGATCTTAATCCGGATGTGAAAAGTACATGCTTTCTGAAAAGTAGCCTTTTAGAAGAGAGTGTTTGTGTCTTTGAGAGGACTCTGTGATGTGATTTGGGATGATGATGTTGGATTATTTTCCGGATTTGTCCTGCATCATGATGTGTGTGTCGTGGACAAGCTGAGAgccagacacagagacagagacagagacagaagagacagagacagaagtgtAAAAGTGTCCTTAATGGAGCGCCTGGTTTCCATTTGGCTGCAGCTGGAGCTCTGGGCCATGGCTGTGCTCTTAACCAGAGGAGAAATCCGGTGTTATTGTGACTCACCGCACTGTGTGGCTACCGGTTACATGTGCAAATCGGAGCTTAACGCCTGCTTCACGCGTATCTTAGATCCCCAAAGCTCCAAATCTCCACTCTCGCACGGCTGTTACGAGCCTGCCCTAAACGGAGGAAGCGTGTGCCGATCCGAGGCTACCCACGATGCCCTGCACGGCCATGCCACGCTCGAGTGCTGTCACGAGGATATGTGCAATTACAGAGGTCCACAGGATCTCACCTACAGCCAGGGAGGAAGCCTGGATCATCGGAGTCGTCCTCAGGCTGAAGGAGGACGTCAGATAATCGCCCGTGTGCAGGAAATCCCCTCCGCTAAGGAAGTGTGGTTCCGCGCTGCCGTCATTGCCGTGCCCATCGCCGGTGGCCTCGTGCTCGTCCTCCTCATCACGCTGGCTCTGCGGATGCTGCGCAGTGAGAACCAGCGCCTGAGGCAGCAGCGACGCGAGATGCTCTCTCGCCTCCACTACGGCTTCCACGGGCAGCATCTGGCCAAAAGCCGCAGCACCAAACTCGACCTGGAGTGCATGATGCCTCTGGGAGGACATGAGAGCTGCTGTCTGACCTGCGATAAGATCAGACAGTCCGATCTGAGCAGCCAGAGACTCTTATCGCTGGTCCACTGGGGACGGCACGGCCCAAGAGGCAAGCTGGAGTTGGTCTGAACGCctttaggaggaaaaaagagggaaaaaaaacaaacttgaaAGCATCATCCATCTGGTTGCTGCTGTAGAAGCACTTTACTTGAATCTGGCACAAGAGCACTGTGCTCAAGACGGACTTTTAAAAACTGGACCTCTCTAATAACtgaaggatttaaaaaaaaaaacaaaaaaaagccaagaCGTGTTATAGATTTGCACTTTTGTATAAAGAAGCGTTTGAGATAAAAATGGACTGTTCATGCTTCCTGAGTGTACAGATTTGTTCGTGTAAATATTACATGACACAGAATCA

Function

NR:

description
PREDICTED: BMP and activin membrane-bound inhibitor homolog

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946304.2 True 1442 mRNA 0.50 3 17990725 17994678

Neighbor

gene id symbol gene type direction distance location
wacb LOC108280665 coding upstream 11603 17965893 ~ 17979122 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding upstream 118696 17860311 ~ 17872029 (+)
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding upstream 136855 17842449 ~ 17853870 (+)
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding upstream 473358 17514697 ~ 17517367 (+)
gpt2l LOC108280657,LOC108430180,LOC107599855,LOC107708598 coding upstream 483338 17487387 ~ 17507387 (+)
gnb4a gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752 coding downstream 440671 18435349 ~ 18449078 (+)
si:ch1073-184j22.1 LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312 coding downstream 459458 18454136 ~ 18477637 (+)
sft2d3 sft2d3 coding downstream 493949 18488627 ~ 18489656 (+)
dusp28 dusp28 coding downstream 523250 18517928 ~ 18520990 (+)
LOC113546359 LOC108280706 coding downstream 549227 18543905 ~ 18546163 (+)
G322233 LOC108280496 non-coding upstream 135467 17854548 ~ 17855258 (+)
G322146 NA non-coding upstream 204024 17721938 ~ 17786701 (+)
G322127 NA non-coding upstream 359213 17631214 ~ 17631512 (+)
LOC117599934 NA non-coding upstream 453565 17525571 ~ 17537160 (+)
G321704 LOC108410862 non-coding upstream 1029991 16958745 ~ 16960734 (+)
G322324 NA non-coding downstream 79651 18074329 ~ 18074748 (+)
G322365 NA non-coding downstream 204162 18198840 ~ 18199709 (+)
G322398 NA non-coding downstream 234717 18229395 ~ 18231463 (+)
G322405 NA non-coding downstream 343651 18338329 ~ 18343490 (+)
G322429 NA non-coding downstream 376049 18370727 ~ 18373883 (+)
npc1 npc1 other upstream 324512 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 354116 17570649 ~ 17636609 (+)
fuz fuz other upstream 507048 17478834 ~ 17483677 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 1131043 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 1197027 16791402 ~ 16793698 (+)
si:ch211-162e15.3 LOC108280563 other downstream 231243 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 399345 18394023 ~ 18430022 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 821331 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 950020 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 1209980 19204658 ~ 19220229 (+)

Expression


Co-expression Network