c1ql3b (c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591)


Basic Information

Item Value
gene id c1ql3b
gene name c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17514697 ~ 17517367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946305.2
TCCACCTCTCTCACTCAGAAGAGATGTAATGCGCTTTTCCCTCGCGCCTTTCTGGTTCCCTTCACGACTTTAACGCATAATTAAGTCGTGATTACGCATCTTGAGAGCACGAGCTGATTCATCCAGCTTCAAGATATCACTCCGTGTGCGGGAGCAAGATAGCGCGCAAAACGCAGCGCGAGGAGCGCCCGTCGCTGTCCGGGCTGGGCGCGAGAACGCGCGCGGTCGCGGCCGGCATCTTCGGCGTGGCcatggtgctggtgctggtCATCCTGATCCCGGTGCTGGTGAACGCGGCCGGGGTGGACGCGCGCTACGAGACGCTCAGCGCCTGCAGGATGGTCTGTGATCCCTACGGCACCATCAAGCCCCCGGCGCGCGCCACCGGCAGCGACCCGCGCTCCATGCAGCCTCCGACCACTTTTCTCCGCGGTCCGAAAGGGGAACCAGGACGCACGGGCCGCGTTGGCCCGAAGGGTGAGCCAGGTCCACCTGGCCCACCTGGCCCGCCGGGAAAAGTCGGAAATCCAGGACCGCCCGGGTTACCTGGACCTCCGGGAGTGATCGGTGTGAGCGGCGGCGTCGTAAACGCGGCCACGTACACCACAGTACCCAAAGTCGCTTTTTACGCCGGGCTCAAGAAGCAGCACGAAGGCTACGAGGTCCTCAAGTTCGACGATGTGGTCACTAACCTGGGCAACCACTACGACCCGGCCACCGGCAAGTTCACCTGCTCCATCCCGGGAATCTATTTCTTCGTGTACCACGTGCTCATGCGGGGAGGCGACGGCACGAGCATGTGGGCTGATTTGTGCAAAAATAAccaggtgaggGCGAGCGCCATCGCTCAGGATGCAGATCAGAACTATGACTACGCCAGCAACAGCGTGGTGTTACACTTGGAGCCTGGAGATGAGATCTACATCAAGCTGGACGGCGGCAAAGCGCACGGAGggaacaacaacaaatacagcACGTTCTCTGGGTTCATGATTTACGCAGATTAACACGTGACAGGACTTGTTGTTTACACGAAAGTCAACCTGCCTGGTTTTTCACTCAGAGacattaaaatgaaaggaaacGCTGCGAATAAATGCAGTTACATCATGCAATTACAGTGTTCACTTGTGATTAAAAGTTATCGTCCTTAAAGCTGGACAAGATGGTTATGATGGTTATGATAGCATAACATGTGAATTCCTTTAAAAGGTTCGTTTTATGGTGTTGGGAAAAAAGTTGGAGTCAGTTGGACATAGTGACCTTAAGCATGTGATGACTTCATCCACCAGTTAGACTTTAGACGAATCACTGTGAGTTATGGAAAAAGGGTTAAGTAatcatgttgtgtttgtttgttggtgaGTTTTGAGCCTCAACATGCGATCAATCACATGTTGTTGGTGACAGTGTCACACTTCTGGTGAGCTTCATTCTGaattttaataagacaaactaCTTAAATGGTTCTGCGGACAAGTTACGCCAACATTGATATGCTGTACCTCAGTTGATCTTTGTATTGCtttattattgaataatataaacattgtgCAATCTACACTAAAATAAAAGATACATCTTCACCGCTGAA

Function

symbol description
c1ql3b Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human C1QL3 (complement C1q like 3).

NR:

description
PREDICTED: complement C1q-like protein 3

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23284 C1QL; C1q-related factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946305.2 True 1594 mRNA 0.52 2 17514697 17517367

Neighbor

gene id symbol gene type direction distance location
gpt2l LOC108280657,LOC108430180,LOC107599855,LOC107708598 coding upstream 7310 17487387 ~ 17507387 (+)
hecw1b hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981 coding upstream 36876 17433918 ~ 17477821 (+)
ccr12a LOC108280814 coding upstream 84972 17427910 ~ 17429725 (+)
si:ch211-106n13.3 LOC108280813,LOC108433067 coding upstream 87433 17400391 ~ 17427264 (+)
exoc3 exoc3,LOC107757821,LOC107656144,LOC107713660 coding upstream 153400 17348910 ~ 17361297 (+)
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding downstream 325082 17842449 ~ 17853870 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding downstream 342944 17860311 ~ 17872029 (+)
wacb LOC108280665 coding downstream 448526 17965893 ~ 17979122 (+)
bambib LOC108280666,LOC108430169 coding downstream 473358 17990725 ~ 17994678 (+)
gnb4a gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752 coding downstream 917982 18435349 ~ 18449078 (+)
G321704 LOC108410862 non-coding upstream 553963 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 621673 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 655119 16792714 ~ 16859578 (+)
G321585 NA non-coding upstream 725090 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 742248 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 8204 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 113847 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 204571 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 337181 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 556962 18074329 ~ 18074748 (+)
fuz fuz other upstream 31020 17478834 ~ 17483677 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 655015 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 720999 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 725729 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 766357 16742805 ~ 16748340 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 53282 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 71705 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 708554 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 876656 18394023 ~ 18430022 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 1298642 18816009 ~ 18871360 (+)

Expression


Co-expression Network