cldn15la (cld15)


Basic Information

Item Value
gene id cldn15la
gene name cld15
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18556334 ~ 18560556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946312.2
TTACTTGAAATAATTGCACTCTCAGTGATCAGCAGCACAGGAAGGAGACGGAGAAGACAGTGTTTAAGCTTCATAAGGCTGCTCTGTGATTTGATTTGGTGCTTGTGAGAAAATTTAGGGTGAAAATGTCAACAGCGTTGGAAGTGACTGGGTTCTTGCTAGGTGTTGCATCTTGGTTGGTAACGGGCGCCTCTCTGGCCAACGACTACTGGAAAGTCTCATCTTTCTCCGGTAGTGTCATCATTTCAAGCCGTCAGTACGAGAACCTGTGGCACGCATGTGCTGAATCCAGCTCCGGGATCGCTGAGTGCCGAGATTTCGAGTCCTTGCTGGACTTGCCAGGCTACCTCCAAGCATGTCGGGCTCTGATGATCATCGCCCTCCTCTTAGGCCTCTTCTCTATGATCTTGTCCATCCTGGGCCTAAAGTGCATTACAATCGGGAGCGCAGGCGATCAGGCAAAGGCTAAGATGGCCACCACTGGTGGCATCATCTTTATCCTGGCAGGTCTTTGTACGATAACGGCTATCTCATGGTACGCTGCACGCATTGTTCAAGACTTTAAAGACCCTTTCAGTGGAGGCATTAAatTTGAGCTGGGGGCAGGACTGTACATGGGATGGGGCGGAGCGTGTCTCTCCATTCTGGGTGGAGCTCTTCTCTGCTGCGCCTGCAAAAGAGCATCTTCAGGAAAATCCAAGGGtggatACTACTCCAGCAGTCATGCAGCGAAGATCCACAAACCCGTGTCCGATTCAGAGACGGCGAGGGCTTACGTTTAAACTTCAGATTTTCTCTGCATGTAGTGTTGTTACTTGGTTGTTCGTTTTAACTGACccattttttctactttttttttaaatatttggctAATGATTAATGTGGAATTTGATTCATTAATGACAAAAGAATGTTTTACGGATGTTGGATATTATGTAATTTGATTACTATGATTGATCTGTattgtgttctgtgttttaaaaggCTAAGGCTAGTTGTGTGGTAAGCAGAGTTTATCTTGGGTTCAATAAAGCTGAATTGAATGGACCAGA

Function

NR:

description
claudin-15-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946312.2 True 1052 mRNA 0.46 5 18556334 18560556

Neighbor

gene id symbol gene type direction distance location
saga LOC108280708,LOC107572428,LOC107673985,LOC107737416,LOC108440874 coding downstream 2459 18547169 ~ 18553875 (-)
LOC113546415 LOC108280512,LOC108280516 coding downstream 16325 18535113 ~ 18540009 (-)
LOC113546413 LOC108280516,LOC108280512 coding downstream 21732 18527170 ~ 18534602 (-)
LOC113546416 LOC108280513 coding downstream 29352 18521401 ~ 18526982 (-)
wdr33 wdr33,LOC107653512,LOC107705313 coding downstream 40069 18490937 ~ 18516265 (-)
sst2 sst2 coding upstream 108478 18669034 ~ 18670613 (-)
LOC113546387 LOC108280703,LOC108436027 coding upstream 111104 18671660 ~ 18692091 (-)
nyap2b LOC108280226 coding upstream 156744 18717300 ~ 18741567 (-)
trnav-aac_21 NA coding upstream 186616 18747172 ~ 18747244 (-)
lhx8a lhx8,lhx8a,LOC108436043 coding upstream 312559 18873115 ~ 18883126 (-)
LOC117599933 NA non-coding downstream 70854 18474224 ~ 18485480 (-)
G322552 NA non-coding downstream 123591 18430135 ~ 18432743 (-)
G322551 NA non-coding downstream 126331 18429659 ~ 18430003 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding downstream 129265 18426733 ~ 18427069 (-)
LOC113546439 NA non-coding downstream 209490 18344046 ~ 18346844 (-)
G322827 NA non-coding upstream 195817 18756373 ~ 18756647 (-)
G322831 NA non-coding upstream 204203 18764759 ~ 18764999 (-)
G322849 NA non-coding upstream 251454 18812010 ~ 18812377 (-)
G322889 NA non-coding upstream 382022 18942578 ~ 18956617 (-)
G323007 NA non-coding upstream 494931 19055487 ~ 19066748 (-)
G322538 NA other downstream 161511 18394249 ~ 18394823 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 684226 17853847 ~ 17872108 (-)
G322080 NA other downstream 1055502 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1582564 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1968518 16564708 ~ 16587816 (-)
G322826 NA other upstream 193216 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 424617 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 442683 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 514444 19075000 ~ 19077917 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 915556 19476112 ~ 19507197 (-)

Expression


Co-expression Network