rab18b (rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439)


Basic Information

Item Value
gene id rab18b
gene name rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17860311 ~ 17872029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946314.2
GCCCACCACAAACTTCGTCAACCTTCTGTCCCAAACAGTGTCACGTCACCGCATCCAGCATTGTCCAGAGTAAAGCTGCGGAAAACCTCACAACATGGACGACGACGTTTTAAccactttaaaaatattaatcatcGGGGAGAGCGGCGTCGGAAAATCCAGTTTGCTCCTGAGGTTTACAGATGACACGTTCGATCCAGAATTAGCCGCAACAATCGGTGTGGACTTTAAAGTGAAAACTATAGCAGTAGATGGCAACAGAGCCAAGCTTGCTATATGGgacaCAGCCGGACAGGAAAGGTTCAGGACTCTGACGCCCAGCTACTACAGAGGTGCACAGGGAGTAATACTGGtgtacGATGTGACGAAGCGGGACTCGTTCACAAAGCTGGAGAACTGGCTCAATGAGTTGGAGACGTACTGCACACGCAACGACCTCGTCAAAATGCTCGTCGGCAACAAAATCGACAAGGACAACCGTGAGGTGGACAGGAACGAGGGCCTGAAGTTTGCTCGTAAACACTCCATGCTATTCATCGAGGCGAGCGCTAAGACCAGGGACGGCGTCCAGTGTGCCTTCGAGGAGCTGGTGGAGAAGATCCTGCAGACCCCGGGCCTGTGGGAGAGCAGCGTCCAGAATCACGGCGTTCAGCTCGGAGAGCAGCAGGCGCAGAGCTACAGCGCCTGTGGCGGATACTGCTCCCTCATCTAACTTCCACAATTCCACCGGACTGAGAcatgagatgaaaaaaaaacaaactgcgATTTCCTGCTTCTGAATGAGAGGCGAAGGTCGGCTCCGTCCCGGGCAGCCGGAGGACGTTCACACACCCTGTGTTTCCTTCCACTTCGATTTCTGTATGGTATTTTATCTAACTTATCATGAGCTGCATTGAATTACCGTTGCTGTCACTATGTCATTATACTGAAGCAGAAGGACCGATGCTgacatcattctctctctctatgttatagttattacaaattaaaaacaggGGCCATTAAAGAAAGAGGGTGGGATTAGTTTCTCTACTCCCGGGGTAAACTGTCCTAACTTTTCCATCAAGTTCCACCCCGTGCTTCTTCTCCAAGCCTCTTTCCTCtatctaatataatatatttccttatttttgtaataatttcGAGTGTTGGCTGCTTTTAACCGGCACCAAACACCCTcctgtttgctgtttttataaTCCATCTCCTCGCTTAGCATGATCCTGCTAGCATTTCTTGAGAAATATTCATACTAAAATATAAGGAATGGCTTTTCTGAGTTCTTATTGTTCTCCCTTTATCGTCTCTGGTGACTAAGCAGTGATTTTACATCCGTAGAACATCTTACAGTGCAATAActctctttattttcatttatggaCCACTGATGTGTACAACTGTAGCACGTGAGTACTGGGTTTCTTGCCGTCCTGCTTACACAAACTACTCAAGCTTGAAAAGTTAGTCTTTTGAAAAGGTTTGGCTGTATCCGAATGGCTCGATTtcaattgctttttttttttttttttaacaactctCCTTATTTTAGACTTTGTTAAGCCTCTAATCGCTGTGTTAAACATGACCGTCACTGTTGATAAATCACTAGAACTGGGTTTAATATCAGTAGTTTGTGTCCTGATTAATTTCATTTACACTATTCCTCATCAGTGGAGAGCTAAACACACTTGGAGGGTACCATTCCTTGTCGCTGCTGTGGTACCCTAAACCCTTTGTATCTTTACTACAAATCTTTCACCTCCATGAAGAGCAGTCAGAAAGGTAAATATGTTCCTTAAATCcttttaaaggtgcactatGTCAAAATTACATATTAAAGGTTCAAACTCTAAGAGTACCACCTCAGCGATAAGTATCATTAACACCTTTTTATCCGAGAGTGTATATCTGAGAGCGTATATTAAACctgatattattttaaagcAGGTATTAGTACTTTCTTGATGGGAGAAGTAGGCCTTCATCTGAAAATCAATAAATCCGACTGTTCGAATCCATTTTTAAAGGGGCTATATGTAAAAGTCATGTTAAAAGCATGTTATGAGGCTGTAGCCTTCTGCTTTTCCTGATACCACCCGAACATCCTGCAAGCAAATAAAGAGCATGTGCAGTCGTCGTTTCCTGTTTGCACCGACACACCTGCTGTATTCTGATGAGCTGAAACTTTTGAAATActgaaatgagcaagaatttgTGGGGTGAATATAAGAGAGGATGGGTTCAGTCAAATGTGTGAGCGGGTACCAGTACTGTGAAATCTGAAACAGATATGTGTTTAACGTGCTACATCCAGGTATAATGTGTCACGTGAAGTTTAAAACAGCATTCGCTGACTTTTAAAAGGTTAATAAACCCACCTGGCATTAATCAGGCGTGAGTTTAGCACTTTCCTTGATATACCTTGAAAATTATTCACATAATTGTATCATAAATttctggataaaagcatcagacAAAAGAATAAACATCTTTTGTACAGATTGATGGAAATTCCAGCAATTAACCAATTGATCGTGTCTTTCGCATACAGctcctttgtgtgtgttgatctcACAAGCGGTTTATCGAGCCGTCGAAGATCCTCGCTGCTCCGATTTGCTTGACTCTAGAGGATGTCGCTGTCTGGATTGCATTCTGTACTACGTTAGGATTGGATTGGAAGTGTGTCAGAGAACATCAGTACTGTTTTCTTTTGCAATAAAATTTCACTTATAATC

Function

symbol description
rab18b Predicted to enable GTPase activity. Involved in brain development. Acts upstream of or within chordate embryonic development and eye development. Predicted to be located in lipid droplet. Predicted to be active in Golgi apparatus. Is expressed in brain; heart tube; optic cup; retina; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in Warburg micro syndrome 3. Orthologous to human RAB18 (RAB18, member RAS oncogene family).
rab18 Enables GDP binding activity. Involved in endoplasmic reticulum tubular network organization. Acts upstream of or within lipid droplet organization. Located in endoplasmic reticulum tubular network and lipid droplet. Implicated in Warburg micro syndrome 3.

NR:

description
PREDICTED: ras-related protein Rab-18-B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07910 RAB18; Ras-related protein Rab-18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946314.2 True 2738 mRNA 0.43 7 17860311 17872029

Neighbor

gene id symbol gene type direction distance location
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding upstream 6441 17842449 ~ 17853870 (+)
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding upstream 342944 17514697 ~ 17517367 (+)
gpt2l LOC108280657,LOC108430180,LOC107599855,LOC107708598 coding upstream 352924 17487387 ~ 17507387 (+)
hecw1b hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981 coding upstream 382490 17433918 ~ 17477821 (+)
ccr12a LOC108280814 coding upstream 430586 17427910 ~ 17429725 (+)
wacb LOC108280665 coding downstream 93864 17965893 ~ 17979122 (+)
bambib LOC108280666,LOC108430169 coding downstream 118696 17990725 ~ 17994678 (+)
gnb4a gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752 coding downstream 563320 18435349 ~ 18449078 (+)
si:ch1073-184j22.1 LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312 coding downstream 582107 18454136 ~ 18477637 (+)
sft2d3 sft2d3 coding downstream 616598 18488627 ~ 18489656 (+)
G322233 LOC108280496 non-coding upstream 5053 17854548 ~ 17855258 (+)
G322146 NA non-coding upstream 73610 17721938 ~ 17786701 (+)
G322127 NA non-coding upstream 228799 17631214 ~ 17631512 (+)
LOC117599934 NA non-coding upstream 323151 17525571 ~ 17537160 (+)
G321704 LOC108410862 non-coding upstream 899577 16958745 ~ 16960734 (+)
G322324 NA non-coding downstream 202300 18074329 ~ 18074748 (+)
G322365 NA non-coding downstream 326811 18198840 ~ 18199709 (+)
G322398 NA non-coding downstream 357366 18229395 ~ 18231463 (+)
G322405 NA non-coding downstream 466300 18338329 ~ 18343490 (+)
G322429 NA non-coding downstream 498698 18370727 ~ 18373883 (+)
npc1 npc1 other upstream 194098 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 223702 17570649 ~ 17636609 (+)
fuz fuz other upstream 376634 17478834 ~ 17483677 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 1000629 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 1066613 16791402 ~ 16793698 (+)
si:ch211-162e15.3 LOC108280563 other downstream 353892 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 521994 18394023 ~ 18430022 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 943980 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 1072669 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 1332629 19204658 ~ 19220229 (+)

Expression


Co-expression Network