cdc7 (cdc7,LOC102782901)


Basic Information

Item Value
gene id cdc7
gene name cdc7,LOC102782901
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19006527 ~ 19014193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946319.2
atttaaaaaaatgctaaaacatcGGTATTGTTCGTGCCGTATAAGTCACGTGATCGCTTCAGTTTTAGCGCGAGTTTTTAGACGGATTAGCTGATTAGCAAGCGGCGCTACTTTTCTCAGAACAagatttttttatcGTCATGGAGACGCTTCAGAGGCTTCCAGCcagcagcacacacagtgtTGGGGATGTAAAACACTGTgaaaaagagacaaataaaaggaaaatttcCAgagaTGTTGAGATGGACATTGAATATCTGTATGAAGTTGTGCCACAGCTCTCCAGAGTTTTCCGAATTACTGACAAAATTGGAGAAGGTACGTTCAGTTCCGTGTATCTCGGCGAAGCCCAGACGAGCGACGGGACGAGAGAGAAGTTTGCGCTGAAGCATCTGATCCCTACGAGTCACCCGGTGCGCATCGCCGCAGAGCTCCAGTGTTTAACCGTCGCTGGCGGTAAAGAAAACGTGATGGGAGTGACATACTGCTTCAGGAAGGACCACCACGTGGTGATCGTCATGCCCTACGTGGAGCATCAGGCCTTCGTGGATATCGTTGACACGCTGAGTTTCGAGGAGGTTCGTcagtatatttatcatttactcAAAGCCTTGAAGCACATCCACGAGTTCGGCATCATCCACCGGGACATCAAGCCGACCAACTTCCTGTACAACCGGCGGGAGAAAAAGTACGCGCTGGTGGATTTCGGCCTGGCTCAGGGAACTCCTGACACTCAGATCGAGCTGTTAAAGGTGGTGAAATCTCAGAAAGCTCAGAAAGAGTCACACGGGAAACAGGCACTGGTTCCTTTACCACCTCACACGAGGAGCTGTGCGCCGCACTCTTCCACAAAAGCGGCAGTGAAAAGACCGTGTCCAAACTCGCGCACTAAACACAGCAagGAGCTGATGGGACTTTGTAAAACGCCTCGTTCCGTGTTCGGCGAGAGAAACCTCAACAGCATAAACCCTACTAAGTCTCCCACAGATAAACCCGAAGTACATGTGATAAAACCTACAAAGACCGACGATGTCATCGCACGCAAGTTCGTCTCCACCAAACGCCGCCCTCTTCCTGCGCGGGCACCGGTGACCAGCCAGAAGACGAAACCCGTGACGCTCAACCCGTCTCTTACCTGTAACTGCTACATGACCGACCGCATCTGCAACATCTGTCTGTCCAGGAAGCAGCAGGTGGCTCCGAGAGCAGGAACGCCGGGATTCAGGGCTCCTGAAGTGCTGACCAAGTGCCCTGACCAAGGAACCGcTATTGACGTGTGGTCAGCCGGCGTCATCCTGCTCTCCCTCCTGAGCGGCAGATATCCGTTTTTCAAAGCCAACGACGACCTGATGGCGTTGACTCAGATCATGACTATCCGCGGCTCGAGAGAAACCATTCAGGCAGCTAAGAAATTTGGCAAGGCGGTGGTGTGTAGCCGCGAGCTTCCCCGACTCGACCTGAGGATTCTGTGCGAGACGCTGAGAGGATTGCGGCCCTGCGGTGACGACTCTCTTCCGGCAGAGTTTCAGGCCTCGCGTCACCCTGCAGACGTTAAAAAAGCGCAGCCTGGCAGCCGAGCGGAGAAACGGAGCAGCGCGGATAACGCCGCAGAATCACACGCCATGGGATGGGACAGAGTTCCTGATGATGTTTATGACCTGCTGGACAAACTGTTAGATTTAAACCCAGCGACGAGAATCACTGCAGCTACGGCACTACAGCATCCGGTGTTTAAAGATATCAgggatgaataaatatttatccaACAGTTAGTAATCCTCAGGAGGAAATCTCAACCAGCAGCGTAGCTGGAGTTCTGTTTGTGTGATGTATATGAAGATGAAGTGCATTAGTTCtgtaatatagtgtactataTGTACatggtgtatatttatttatccagtGTGATGTTGAGTTTTCTGAGATTTCATGAAATGGAGTTTGGCCCAATAGgtgcattacattacagtaacattttaataaacattttaagaaCA
>XM_034297785.1
atttaaaaaaatgctaaaacatcGGTATTGTTCGTGCCGTATAAGTCACGTGATCGCTTCAGTTTTAGCGCGAGTTTTTAGACGGATTAGCTGATTAGCAAGCGGCGCTACTTTTCTCAGAACAagatttttttatcGTCATGGAGACGCTTCAGAGGCTTCCAGCcagcagcacacacagtgtTGGGGATGTAAAACACTGTgaaaaagagacaaataaaaggaaaatttcCAgagaTGTTGAGATGGACATTGAATATCTGTATGAAGTTGTGCCACAGCTCTCCAGAGTTTTCCGAATTACTGACAAAATTGGAGAAGGTACGTTCAGTTCCGTGTATCTCGGCGAAGCCCAGACGAGCGACGGGACGAGAGAGAAGTTTGCGCTGAAGCATCTGATCCCTACGAGTCACCCGGTGCGCATCGCCGCAGAGCTCCAGTGTTTAACCGTCGCTGGCGGTAAAGAAAACGTGATGGGAGTGACATACTGCTTCAGGAAGGACCACCACGTGGTGATCGTCATGCCCTACGTGGAGCATCAGGCCTTCGTGGATATCGTTGACACGCTGAGTTTCGAGGAGGTTCGTcagtatatttatcatttactcAAAGCCTTGAAGCACATCCACGAGTTCGGCATCATCCACCGGGACATCAAGCCGACCAACTTCCTGTACAACCGGCGGGAGAAAAAGTACGCGCTGGTGGATTTCGGCCTGGCTCAGGGAACTCCTGACACTCAGATCGAGCTGTTAAAGGAGCTGATGGGACTTTGTAAAACGCCTCGTTCCGTGTTCGGCGAGAGAAACCTCAACAGCATAAACCCTACTAAGTCTCCCACAGATAAACCCGAAGTACATGTGATAAAACCTACAAAGACCGACGATGTCATCGCACGCAAGTTCGTCTCCACCAAACGCCGCCCTCTTCCTGCGCGGGCACCGGTGACCAGCCAGAAGACGAAACCCGTGACGCTCAACCCGTCTCTTACCTGTAACTGCTACATGACCGACCGCATCTGCAACATCTGTCTGTCCAGGAAGCAGCAGGTGGCTCCGAGAGCAGGAACGCCGGGATTCAGGGCTCCTGAAGTGCTGACCAAGTGCCCTGACCAAGGAACCGcTATTGACGTGTGGTCAGCCGGCGTCATCCTGCTCTCCCTCCTGAGCGGCAGATATCCGTTTTTCAAAGCCAACGACGACCTGATGGCGTTGACTCAGATCATGACTATCCGCGGCTCGAGAGAAACCATTCAGGCAGCTAAGAAATTTGGCAAGGCGGTGGTGTGTAGCCGCGAGCTTCCCCGACTCGACCTGAGGATTCTGTGCGAGACGCTGAGAGGATTGCGGCCCTGCGGTGACGACTCTCTTCCGGCAGAGTTTCAGGCCTCGCGTCACCCTGCAGACGTTAAAAAAGCGCAGCCTGGCAGCCGAGCGGAGAAACGGAGCAGCGCGGATAACGCCGCAGAATCACACGCCATGGGATGGGACAGAGTTCCTGATGATGTTTATGACCTGCTGGACAAACTGTTAGATTTAAACCCAGCGACGAGAATCACTGCAGCTACGGCACTACAGCATCCGGTGTTTAAAGATATCAgggatgaataaatatttatccaACAGTTAGTAATCCTCAGGAGGAAATCTCAACCAGCAGCGTAGCTGGAGTTCTGTTTGTGTGATGTATATGAAGATGAAGTGCATTAGTTCtgtaatatagtgtactataTGTACatggtgtatatttatttatccagtGTGATGTTGAGTTTTCTGAGATTTCATGAAATGGAGTTTGGCCCAATAGgtgcattacattacagtaacattttaataaacattttaagaaCA

Function

symbol description
cdc7 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in double-strand break repair via break-induced replication and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CDC7 (cell division cycle 7).

NR:

description
cell division cycle 7-related protein kinase isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02214 CDC7; cell division control protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946319.2 True 2003 mRNA 0.50 12 19006527 19014193
XM_034297785.1 False 1853 mRNA 0.50 12 19006527 19014193

Neighbor

gene id symbol gene type direction distance location
cdcp2 cdcp2 coding upstream 4320 18995557 ~ 19002207 (+)
fam151a fam151a coding upstream 69737 18931059 ~ 18936790 (+)
cryz cryz coding upstream 80954 18919067 ~ 18925573 (+)
sdr16c5a LOC108280727 coding upstream 196317 18799203 ~ 18810210 (+)
penka LOC108280728 coding upstream 208666 18791345 ~ 18797861 (+)
rpap2 rpap2 coding downstream 13688 19027881 ~ 19042630 (+)
rpl5a rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486 coding downstream 59514 19073707 ~ 19077866 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding downstream 80729 19094922 ~ 19106149 (+)
ccdc18 ccdc18 coding downstream 96095 19110288 ~ 19136781 (+)
scinlb LOC108280481,LOC108436067,LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC106598932 coding downstream 129415 19143608 ~ 19160143 (+)
G322817 mrpl37 non-coding upstream 11904 18993758 ~ 18994623 (+)
G322802 NA non-coding upstream 47208 18959083 ~ 18959319 (+)
G322747 NA non-coding upstream 191710 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 193679 18812503 ~ 18812848 (+)
G322744 NA non-coding upstream 194192 18811105 ~ 18812335 (+)
G322957 NA non-coding downstream 93193 19107386 ~ 19109334 (+)
G323104 NA non-coding downstream 420037 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 498531 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 568124 19582317 ~ 19583323 (+)
G323240 NA non-coding downstream 629630 19643823 ~ 19644570 (+)
ssbp3a ssbp3,ssbp3a other upstream 21445 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 135167 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 576505 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 779294 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1340314 17589072 ~ 17666213 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 190465 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 299667 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1115060 20129253 ~ 20281067 (+)
G323534 NA other downstream 1424509 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1623391 20637584 ~ 20663819 (+)

Expression


Co-expression Network