tceanc2 (tceanc2)


Basic Information

Item Value
gene id tceanc2
gene name tceanc2
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19003239 ~ 19006379 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946327.2
gCGTAACGACTTTTACTTTGAAACTTTCGCCTCGTCACAATGGTCATGGCGCCTAGCTGATATATCACTAGCTAGCAAGCtatgtttattttcctttcttattatttagtaattagTTACATTGTTACTTAATGAACAGCTGGAAAGTGTATGTttttagttaattaaaaaaatcttataaaatgttaataaatatacacaactCGAGCAGAAAATCGGGATTATGAGCTACTTCCGGGTGTATTAgcataaaataattaaagagcCAGCATTGGTGAACATTAGGGTTTAAAAAGTCCAGAAGAAAGGACTTGGAGAAATGGATAAATTTGTGGTCCGTGTTCCAAAGAATGATCAGGCAAGACAAGGACAAAACCATGAAGAGAAAGTGTACAAACAGGCAACGCTAGAGTCTTTAAAGAGAGTGGTGGTGATTGAGGACATTGAAAGGTTCAGGTCCATCCTGGAGTTACCCGGTCAGACCAGAGAGAACATGTTAAACGCTCTGATGGAGCTGGACAAGAAAGTGCCTTCTAAAGAAGTGCTCAAGTCCACCAGGATCGgtCACACAGTGAACTCGCTGCGTAAGAAGCACCCGGACGCTGAGGTGAAGTCGTTGGCTCGGCAGGTTTACACACACTGGAGGACGTTCATCGAGGAGAACGCCAACAAGCCGTCCATCGAGGTTCGCTGTGATAAACAGACCGAGGAGCTGAGGAGCAACGCCAGAAAACTCCTCGCTGAGAGCATGGGGTTAGAGGCTGACGCTGCGCTGGTGGATAACATGGAGAGGGAAGTGTTTCATCAGTGCTCGCGGCTGATCAGCGGAGCGTACAGGAGGAGTGTGAGGGCGCTGGTGTTCGCTCTCAAACACAAACCGGACGTCAGAGCGCAGGTGAAGGACGGCAGAATCGCCGTTAACGTGTTCGTCAGCAGCCACAAGAAGAAACTGTGACACTGAGATGAAAgagaccccacacacacacacacacacacacacacacacacacacactctctcacagatacacacac
>XR_004576919.1
gCGTAACGACTTTTACTTTGAAACTTTCGCCTCGTCACAATGGTCATGGCGCCTAGCTGATATATCACTAGCTAGCAAGCtatgtttattttcctttcttattatttagtaattagTTACATTGTTACTTAATGAACAGCTGGAAAGTGTATGTttttagttaattaaaaaaatcttataaaatgttaataaatatacacaactCGAGCAGAAAATCGGGATTATGAGCTACTTCCGGGTGTATTAgcataaaataattaaagagcCAGCATTGGTGAACATTAGGGTTTAAAAAGTCCAGAAGAAAGGACTTGGAGAAATGGATAAATTTGTGGTCCGTGTTCCAAAGAATGATCAGGCAAGACAAGGACAAAACCATGAAGAGAAAGTGTACAAACAGGCAACGCTAGAGTCTTTAAAGAGAGTGGTGGTGATTGAGGACATTGAAAGGTTCAGGTCCATCCTGGAGTTACCCGGTCAGACCAGAGAGAACATGTTAAACGCTCTGATGGAGCTGGACAAGAAAGTGCCTTCTAAAGAAGTGCTCAAGTCCACCAGGATCGgtCACACAGTGAACTCGCTGCGTAAGAAGCACCCGGACGCTGAGGTGAAGTCGTTGGCTCGGCAGGTTTACACACACTGGAGGACGTTCATCGAGGAGAACGCCAACAAGCCGTCCATCGAGGTTCGCTGTGATAAACAGACCGAGGAGCTGAGGAGCAACGCCAGAAAACTCCTCGCTGAGAGCATGGGGTTAGAGGCTGACGCTGCGCTGGTGGATAACATGGAGAGGGAAGTGTTTCATCAGTGCTCGCGGCTGATCAGCGGAGCGTACAGGAGGAGTGTGAGGGCGCTGGTGTTCGCTCTCAAACACAAACCGGACGTCAGAGCGCAGGTGAAGGACGGCAGAATCGCCGTTAACGTGTTCGTCAGCAGCCACAAGAAGAAACTGTGACACTGAGATGAAAgagaccccacacacacacacacacacacacacacacacacacacacacagacacacacactctctctctttcacaga

Function

symbol description
tceanc2 Predicted to be located in nucleus. Orthologous to human TCEANC2 (transcription elongation factor A N-terminal and central domain containing 2).

NR:

description
transcription elongation factor A N-terminal and central domain-containing protein 2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946327.2 False 1034 mRNA 0.46 4 19003326 19006379
XR_004576919.1 True 1045 misc_RNA 0.46 5 19003239 19006379

Neighbor

gene id symbol gene type direction distance location
acot11a acot11 coding downstream 53923 18936784 ~ 18949316 (-)
tyw3 tyw3 coding downstream 85075 18914202 ~ 18918164 (-)
lhx8a lhx8,lhx8a,LOC108436043 coding downstream 120113 18873115 ~ 18883126 (-)
trnav-aac_21 NA coding downstream 255995 18747172 ~ 18747244 (-)
nyap2b LOC108280226 coding downstream 261672 18717300 ~ 18741567 (-)
glmna glmn coding upstream 10103 19016482 ~ 19027883 (-)
gfi1aa LOC108280759 coding upstream 37517 19043896 ~ 19053142 (-)
dipk1aa LOC108280758,LOC108436064 coding upstream 72344 19078723 ~ 19091689 (-)
LOC113546473 NA coding upstream 183935 19190314 ~ 19197494 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding upstream 220371 19226750 ~ 19229596 (-)
G322889 NA non-coding downstream 46622 18942578 ~ 18956617 (-)
G322849 NA non-coding downstream 190862 18812010 ~ 18812377 (-)
G322831 NA non-coding downstream 238240 18764759 ~ 18764999 (-)
G322827 NA non-coding downstream 246592 18756373 ~ 18756647 (-)
LOC117599933 NA non-coding downstream 517759 18474224 ~ 18485480 (-)
G323007 NA non-coding upstream 49108 19055487 ~ 19066748 (-)
LOC117600001 NA non-coding upstream 191681 19198060 ~ 19204380 (-)
G323088 NA non-coding upstream 211464 19217843 ~ 19220218 (-)
LOC117599938 NA non-coding upstream 223975 19230354 ~ 19275396 (-)
G323092 NA non-coding upstream 308132 19314511 ~ 19315470 (-)
mrpl37 mrpl37 other downstream 8603 18985173 ~ 18994636 (-)
G322826 NA other downstream 247646 18753772 ~ 18755593 (-)
G322538 NA other downstream 608416 18394249 ~ 18394823 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 1131131 17853847 ~ 17872108 (-)
G322080 NA other downstream 1502407 17500065 ~ 17500832 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 68621 19075000 ~ 19077917 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 469733 19476112 ~ 19507197 (-)
G323726 NA other upstream 1188915 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 1377822 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 1455636 20462015 ~ 20469569 (-)

Expression


Co-expression Network