penka (LOC108280728)


Basic Information

Item Value
gene id penka
gene name LOC108280728
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18791345 ~ 18797861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946330.2
gagtgcgcacacacacacacacacacacacagagtggtgGAGTTAAAGCCTGAACACCATCGCTGCTCATCatcacagtgctgctgctgccgtgtgtgtgtgtgtgtgagtgagtgagtgtgtgtgtgcaggtctcTGATCTGCGTCCTCTCACAGGGACTTTAGTCAACCCCACTGAGGCTTCTGTGCCGAGAAAATCTTCATCCTGCACTTCCCCGACTCAGAGCTCCGGAGGACTGACACCACAAACACAGCTCATGGCAGTGATGGTGAACGTGTGCTGGATGTTGGCACTGAGTGCGTGCTTGGTGCTGAAGGTGCAAGCGGAGTGCACTAGGGAGTGCGCACTCTGTCTGTACGGCTCATTAGCGGCGCAGCAAGCAGACAGCAGCACCGGGCCCTGCACGCTCGAGTGTGGAAGCAGCGTGGACCTGAGGAAGCTGGGCCTCTGTCGGAACGCTCTGACCGAAGACGAGCGTGCCACCGTGGATCAGAAACCAGAGTCTGACAGCACCGAGCACCTTCTGGCCAAGAAATACGGCGGCTTCATGAAACGCTACGGTGGCTTCATGATGAAGAAGACCTCAGAAGACCTCGCGAAGGACGAAGCCGATGGAGATTCCGAGGAGGAGCTGGACATCCTGAGGGAGATCCTGAGGGTGGGCCTGGATGCCAACGAGCCGGGCAAGGAGCTCCAGAAGCGCTACGGAGGCTTCATGCGCAGGGTGGGCAGACCGCAGTGGCTCGACGAGCCCAAACCTTACGGCCTTCACAAACGCTGGGAGGACGAGGGAGCGGAGAACGTGTTGCCTGAGACACACAAGAGATATGGAGGCTTCATGGATTAGGAGCTGATGCGAAGATTCAAAACGGACACTCATCGTTGCAAAACAATCCCCAATGTGTGCACAGCTAACGACTTAAcgttaatttattattaatgtattaatatgtgccaagtcattttctttttgctcttttgctTTGGCTATAGAGATGAGTGATTCATGATGAGTGATTCTTTGAGCGACTCTTTTAATTGAATCAGATTAGTGAGTCAATTTGCAAGTGAatcaaaatgtttaatgttcattttattattttaatagtgTGTATATTTctacaattacaataaaattatacattaaattaaattaaacattaaattaaattaaattaaattaaataagagCCTCTTAtatgttttttctgtcttgatAAATTATGGCGTGTTATTAGATTCACGAATCAAGATTCAAGAGATTTAACAATTTAACTAAATTActtctattttttaataaatggaaGATATATAGATctatttcagtaaaaaaaaactatcatgTAGATAACCAATAATAATGAACCCATATTGTAGCTTGTTTAATGGCGAACCAAATGAATCAGCAATCGATTCATTTAAATACGTAGTTCAAAAGAATCAAATCACTAAAGTGAGTCGTGATGCCCATTGCTTCTTTGCTAATGCATATATATCTCCATAATAAAGTCTGTTCAGTagtttaagtgtgtgttttagtgggTTATTATTTTACACCATGCCTATAGCTATACATATACATGATTTTTTGTACAGATAAAGAAAACTGTCGAGCACAATAATCACAACATTGCGTTCTCCATCAGGTAGTGAAGTGATTCGTTACACCAATTCAAGTgaattggttttattttggagtatGTACAAGATTTCATCTACgtgttgatgatggtgtgtaTCTTGCATTTATCTCATTATGTGTTTCAGTCATTTCTGATTAATTGGTTGTACAGAGTACAATAAATTCATCTGACTGCAGGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946330.2 True 1823 mRNA 0.43 3 18791345 18797861

Neighbor

gene id symbol gene type direction distance location
bpnt2 impad1 coding upstream 27857 18756729 ~ 18763488 (+)
mffb LOC108280720 coding upstream 37285 18747527 ~ 18754060 (+)
LOC113546386 LOC108280704 coding upstream 74793 18692192 ~ 18716552 (+)
cwc25 cwc25,LOC102792885,LOC101487873 coding upstream 123773 18663158 ~ 18667572 (+)
fgf12a fgf12a,fgf12,LOC108280711,LOC108436038,LOC106568709,LOC105006885,LOC106598267,LOC103365152,LOC107549734 coding upstream 153641 18585063 ~ 18637704 (+)
sdr16c5a LOC108280727 coding downstream 1342 18799203 ~ 18810210 (+)
cryz cryz coding downstream 121206 18919067 ~ 18925573 (+)
fam151a fam151a coding downstream 133198 18931059 ~ 18936790 (+)
cdcp2 cdcp2 coding downstream 197696 18995557 ~ 19002207 (+)
cdc7 cdc7,LOC102782901 coding downstream 208666 19006527 ~ 19014193 (+)
G322738 NA non-coding upstream 25743 18765192 ~ 18765602 (+)
G322696 NA non-coding upstream 70906 18715395 ~ 18720439 (+)
G322462 NA non-coding upstream 351479 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 358643 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 417462 18370727 ~ 18373883 (+)
G322744 NA non-coding downstream 13244 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 14642 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 16753 18814614 ~ 18814817 (+)
G322802 NA non-coding downstream 161222 18959083 ~ 18959319 (+)
G322817 mrpl37 non-coding downstream 195897 18993758 ~ 18994623 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 361323 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 564112 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1125132 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1154736 17570649 ~ 17636609 (+)
fuz fuz other upstream 1307668 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 18148 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 146837 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 406797 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 515999 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1331392 20129253 ~ 20281067 (+)

Expression


Co-expression Network