LOC113546452 (LOC108280527)


Basic Information

Item Value
gene id LOC113546452
gene name LOC108280527
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19364746 ~ 19384317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946340.2
ctcacacacacactctctcacacacgcgcgcacacactcacacactccggAGAGAGTTATGCGTGTGAGGATGATGAAGTCGGTGTGAAGGAGCTGGAGGactgcgtgtgcgtgcgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtttttaacctTTGGGACATGAGGAGCGGAGCGAATCGGCGCCTCACCGGTGGGAGAAGGTGGAGGAGAGGTCGAGCTAAGCGAGGACTGTTCGCAATGTTATCTGCAGCCACTGATGCCACATTTCAAAGCAGAAACTGGAAGATGGTGGTCTGGGTGCTTGTGTCTCTGCTGCCCCTAGTAGTTGGAGACAGGCCCGTTTTTAGCGAAGACCCCGTGGATGCAGTGGGTTTAGTTACGACCATGCTGGATGAGCAGCCGTTTGACGCTCTACCCGAGGAAGACGAGGAGATGGGAGATGGAAACGGCCATTCTCCATGGCATAACGTTTTTGAACCCTCGGTTCTAGTAGAGGAGGAGCGTCCAGCTCGGTGGGAGCGTTCCCCACGTTCCTCAGATGCCTCTGATGCTCAGTCCAAGGGCTCAcgcaagaaaaagaagaagaagaagaaagagaaggaaaagggTGAGGATGAGGGGCGGGGCCAGAGCAACGGTGACTGCCACCTGGAGAGACGTGAGATGCGAGTGAGGGACCTGGGGATGGGTTACGACTCGGACGAGATTGTGCTCTTTAAATTCTGCGTGGGTTTGTGCCAGAGTGCACGGGGGAACTATGACGCAGCGCTGCGGGCTCTGCTGACCAACGGCAGCCTGCCGAAACGAACAGCACGCAAGGTCAGCACCAGACCCTGCTGCCGACCCACGGCGTACAAGTCTGTCTCCTTCATGGACACGTCCACAACATGGAGGACCATCGAGAATGTCTCGGCCTTGGACTGCAAGTGCGTGGGCTAAGTCAgagtcagaggaggagaaaagtAATCGATCCCCCTCGAGAAAGAGAGGCAACATGGAGCCAGTGGGATTCCTGAAATTGAGATTACAGGAATAGGAGGCATTCTGGGAGGAAAGCTGTTCCAGCGGAAGGAGACAGCAAGGCTTCTGTGACATGCACCATGTATGCATTCAGCCTTTTATATTCCCAAAACCAGAGTGAAAAAGCTCAGATTGATGCCGGACTCGCCCGAGGTTGGAGCATGGCATGGAGAAGTTCTTTGGAAGGTAGACGATGGAGCCACAATGGACGCTGATGGATTGCTCAAGAACTAGTCATGAGAAACTTGGCAAGAAACATTGCAAGACTATAATAACATGGAACGTTCCATTTGTCCATTTGTTACTGAAGGACGTCAGAGCTTTGAGTGTGTATATCCGCCAATAACGGATGAAACCATTTTATATTGTTTGAGCAAAAGCGGATTGTAATTTTTGACATTCAGGTTAACATATCACACACTGCCTAAATTACAAAAGCTATTATTATACATGATTTTATAAACTTAAAATATAAACTGAATTAAACCATTCGTACACAAAGCTGTGGACTGTTAAGGGAACTGATGAAAAGGTCCATAAACGCTTTAAGGATtactttgttgaaaaaaaatgtatgtgattttccTTCTTAAACTTTCACCCAATCAAGACATGCTTGAAGTCCAGCGTTTCTCTGTATTTACTTTAACACTCAggctacgaggctaatgtttAGTATCTAGCAAGGAATGGAAGTCTGTATCACCAACAATCTTTAAATGACATCGATATGCTAcataaaatcatttctaaattttaaacttgtaagttgttttttaagatttaagacTGAAAGTGCAACTATATTGCCATCCATATTAGGAGACAGAGTCTAGGAGGATTAGGAGGAGTCTAGGAGGTGAACTTATACCTAGGGAACTAGGGAAGACAGTGATTctggttgtccaagatggctgcctaTGTAATGGTGAGGTTTTGTTCATGCTTATGCATTCAATAAGTCACACTAGCTAGTCCGATAAGCAATCTGTCTTAAGGAAAATATTGTTCTAACTCAAACCTAGACCAACCTAGAATTTGGTTTGCctgttagctaatgttaatgatcCTGTTTGAAAGAATGCTAAAGGACAtcagcaatgaaaacaaaacttaactagctagctatttcatcaagctaatttacaaaacctaactagctagctaattcatcAAGGtaatttacaaaatttaactagccaactagctaattaaacaaactaattTAAAACTGAACTAGCTAATTTAgtaaatttaatgttaaatcaACGTACATCTTTAGATTTAATGGTGGATTTTAAGACAACATCttactaagaaaaaaactgaaaaatagaaaaagtttcatagattttgagatttttttgaGTAAGGACtgaaaagtatgttttttttttcttaaaatttccTTCACTAAAATTTAGCTAGtggttagctacattagcctcataatTTAGCTAGtggttagctacattagcctcatagctgcAGTGCAAACGTCAGACAGCAAACATGGCTGATTGACGTCATTTAGGAAAAGTGGGAAATTGCTGTAATGCGCCAGCTTTAATGTGATGGCTAACAGGTGAACTGATACGAATCCGGTCAGCGATGTAACACCAGCAGTAGCATAACACCAGGATTAGCATTAAGATGTCATCAGGCAAATCTTTATTTCTGTCCTTAATGTTGCTACCGACTGCAATGCGTTTTGTCGTTGTGCTACAACATGGATGCTGTGCATCTCTTAGCATTTACTGTATGCTTCATaggtcaaatatttatttttgcatctaagttatttatttattcattcttgtGTATAaggatgtgtttttgaccctttatatatttattaacgtgtataataatgtttatCTGCTTCATTCCCACCTCATTCGGCAAGCTCAATCGGCAAggctttgatt

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946340.2 True 2950 mRNA 0.43 4 19364746 19384317

Neighbor

gene id symbol gene type direction distance location
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding downstream 33877 19316638 ~ 19330869 (-)
nsun4 nsun4 coding downstream 51072 19310150 ~ 19313674 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding downstream 135150 19226750 ~ 19229596 (-)
LOC113546473 NA coding downstream 167252 19190314 ~ 19197494 (-)
dipk1aa LOC108280758,LOC108436064 coding downstream 273057 19078723 ~ 19091689 (-)
st3gal3b LOC108280530 coding upstream 8936 19393253 ~ 19456415 (-)
ptprfb ptprfb,LOC108280478 coding upstream 128405 19512722 ~ 19668895 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 524792 19909109 ~ 19985267 (-)
tmem275 LOC108280259 coding upstream 721655 20105972 ~ 20110891 (-)
kncn kncn,LOC107700491,LOC107710543 coding upstream 727053 20111370 ~ 20121708 (-)
G323092 NA non-coding downstream 49276 19314511 ~ 19315470 (-)
LOC117599938 NA non-coding downstream 89350 19230354 ~ 19275396 (-)
G323088 NA non-coding downstream 144528 19217843 ~ 19220218 (-)
LOC117600001 NA non-coding downstream 160366 19198060 ~ 19204380 (-)
G323007 NA non-coding downstream 297998 19055487 ~ 19066748 (-)
G323298 NA non-coding upstream 1914 19386231 ~ 19386432 (-)
G323303 NA non-coding upstream 6840 19391157 ~ 19391357 (-)
G323308 NA non-coding upstream 53906 19438223 ~ 19493730 (-)
G323327 NA non-coding upstream 217792 19602109 ~ 19602336 (-)
LOC117599987 NA non-coding upstream 426151 19810468 ~ 19814211 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 286829 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 358367 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 370110 18985173 ~ 18994636 (-)
G322826 NA other downstream 609153 18753772 ~ 18755593 (-)
G322538 NA other downstream 969923 18394249 ~ 18394823 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 91795 19476112 ~ 19507197 (-)
G323726 NA other upstream 810977 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 999884 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 1077698 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 1281974 20666291 ~ 20714017 (-)

Expression


Co-expression Network