ghrhra (LOC108280336,LOC108433063)


Basic Information

Item Value
gene id ghrhra
gene name LOC108280336,LOC108433063
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16975923 ~ 16991112 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946355.2
TGCAGTCTCTCCTGCAGGATGCCCTCTTCTGAGTGAGGAAATCTGTCTGATCTCCTATATTTTGTTCCTttagaacaaaatgaaagaGTTTTGATCGGATTCTGGAGGATTATTTTGGgtaattacattaaaaccactcGGATATCAGGGGACAGTTATGGCCAGTTTGCACATGGACGGGTTATATCTGTGGATACTCGGCTCTTTTTGGGGAACTGTGGAGGCCATCCACCCGGATTGCGCCATCATCTCACAGCACATGAGGGCTCAGGAGCTCTGCAGTCAGACCaagaagaaagagagcaagaacCAAACGGAACCACAGGgctGCAAGACGGAATGGGACGAGATCCGCTGCTGGCTCAGAGCCGACGTTGGCCAGGTGGTTAACATGTCCTGTTCAGAAGTTTTCCAGCACTTTTCCAGCAAGCAAGGTTACATCTACAGGAACTGCACAGCAGAAGGCTGGAGTGACCTGTACCCACCTTACGAGAAAGCCTGTGGGTTAGGGAATGACACAGAGCCTGAATCTAAGacaaCCTACTTCTCAACGTTTAAGCAGGTGTACACAGCAGGCTATGCCACATCTCTGATATCTCTCATAACAGCTATCTTAGTCTTCACTTTCTTCAGGAAGTTCCACTGTACCAGGAACTACATCCACATCaatctcttttcttccttcattcTCCGGGCCAGTGCAGTCTTCATCAAAGATGCAGTTCTTTTCTCAGACGAGTCCCTGGATCACTGCTTCATGTCCACAGTGGCATGCAAATCTGCTGTAGCTTTCTTCCAGTTCAGCATCCTGGCTAATTACTTCTGGTTGCTGGTGGAGGGCATGTACCTGCAGACGCTGCTCGCTCTCACCTTCGTCTCGCAGAGGAAGTACTTCTGGTGGTACATTCTGACTGGATGGGGCGTGCCAGCAGTTGTCCTTATTGTTTGGGTGTTGGTACGACATTTCTACGACAACAGTGGTTGCTGGGATGACACGGATAACATTGGTGTCTGGTGGATAATCAAAGGTCCAATAACAGCATCCTTGTTTGCCAACATTATCATCTTCCTAAATGTGATCCGGATCCTGGTCGAGAAGCTCAAGTTTCCCGGTGTAGGAGGCAATGACACTGGCCATTTCATGAGGTTGGCTAAGTCCACTTTGTTCTTGATCCCTCTGTTTGGGATGCACTACACCGTGTTCGCCTTCCTGCCAGAGAACACGGGAGAAACGGCGCGACTCTACATCGAGCTTGGTCTAGGCTCcttccagGGCTTTGTGGTTGCTCTTCTGTACTGCTTTCTCAATGGCGAGGTACAGGCTGAGCTGAAGAGGAGTTTGTGGACGTGGCAGACCCAGAATCAGCTCAGCCCTGGTAAAAAGCGGCGCATCACTGTCACTCAGATTAGCATACTGGAGAGGGGCGAACCGCAGTCACATTTCAGTTCCATTAAAGTCACGTCGGTGTGAATGTCCAACTTCAAGTCCGAGTTGTATCAATGGGAATGCAAGCAAATGGGAATATCCTTGCATCTTCTGAGGACACAAAGGGATGTGAAATACAGAGCAGATCTCAGGAAGAGCTAAGGATCAGCGAGCGGagattaaagaattaaaatgcAGATTGGTTTGAACAACCAGAAGATAACAGAAAGCCTATGGgttagtaaagaaaa

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: pituitary adenylate cyclase-activating polypeptide type I receptor-like

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016520 growth hormone-releasing hormone receptor activity molecular_function
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946355.2 True 1677 mRNA 0.48 13 16975923 16991112

Neighbor

gene id symbol gene type direction distance location
LOC117599965 LOC108280683 coding upstream 19363 16952977 ~ 16956560 (+)
ftr67 LOC108280685 coding upstream 28577 16941842 ~ 16947346 (+)
si:ch73-52e5.2 LOC108280810 coding upstream 37249 16935805 ~ 16938674 (+)
them6 LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514 coding upstream 38435 16931308 ~ 16937488 (+)
LOC113546333 NA coding upstream 93165 16873882 ~ 16882758 (+)
xcr1b.1 NA coding downstream 75089 17066201 ~ 17071957 (+)
xcr1b.2 NA coding downstream 84618 17075730 ~ 17081658 (+)
cntnap2b cntnap2b,LOC108280767,LOC108433079,LOC107713665,LOC107757823,LOC107599243,LOC107663527,LOC107656139 coding downstream 247814 17238926 ~ 17293166 (+)
cul1a LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526 coding downstream 304052 17295164 ~ 17311204 (+)
mcm6l mcm6l,LOC108280894,LOC108433082,LOC107656140,LOC107713663,LOC107757789 coding downstream 321970 17313082 ~ 17321037 (+)
G321704 LOC108410862 non-coding upstream 15189 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 82899 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 116345 16792714 ~ 16859578 (+)
G321582 NA non-coding upstream 183826 16750160 ~ 16792097 (+)
LOC117599934 NA non-coding downstream 534459 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 640102 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 730826 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 863436 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 1083217 18074329 ~ 18074748 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 116241 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 182225 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 186955 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 227583 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 843559 16131335 ~ 16132364 (+)
fuz fuz other downstream 487722 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 579537 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 597960 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1234809 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1402911 18394023 ~ 18430022 (+)

Expression


Co-expression Network