cdcp2 (cdcp2)


Basic Information

Item Value
gene id cdcp2
gene name cdcp2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18995557 ~ 19002207 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946356.2
TACTGACTCAAAGAGGCAACTTAAAGTATTGGCTCATTGTACTGACTCAAAGAGCCAACTCAAAGTGCTGACTCAAAGAGCAGAGTCACAGTACTGACTCAAAGAGCCAACTCAAAGTACTGACTCAAAGAGCAGAGTCACAGTACTGACTCAAAGAGCCAACTCAAAGTACTGACTCAAAGAGCAGAGTCACAGTACTGACTCAAAGAGCCAACTCAAAGTACTGACTCAAAGAGCAGAGTCACAGTACTGAGTCAAAGAGCCAACTCTAAGTACTGACTCAAAGAGCAGAGTCACAGTACTGAGTCAAAGAGCCAACTCAACGTACTGACTCAAAGAGCAGAGTCACAGTACTGACTCAAAGAGCCAACTCTAAGTACTGACTCAAAGAGCAGAGTCACAGTACTGAGTCAAAGAGCCAACTCAACGTACTGACTCAAAGAGCAGAGTCACAGTACTGACTCAAAGAGCCAACTCAACGTACTGACTCAAAGAGCAGAGTCACAGTACTGACTCAAAGAGCCAACTCTAAGTACTGACTCAAAGTACTGACTCAAAGAGCCAACTCAAAGTACTGACTCAAAGAGCAGAGTCACAGTACTGAGTCAAAGGGCCGGCTCTTTGCCAGAAGAAACTGGTTCATCTTAAATATGGATCTGCGACTGTTTTCATCTCCTTTTGTCCATGTTTTTAGATAACAGCGTGTCACACAGAGTCAGAAAGCACATCAACAGCTCTGTCTGAGACACAGTAcagatgctaaactggtggctacaCATTATCCTTGCAGCCTTGAGCTCCAGAGAGCGCAGTGTTTTGTGCGTgacacattaacatttaatgcCGACTCTCCAAACACTGCCATGAGCCGCCGCTGTGTGTATCTGATATCACTCATTAAAATTTAGCGGAGAAGGTGAACCCCTGAACCATCACATTCCACATCAAGACTTCACACACTCCGCTGTCTGCATCTCGTTTTTGTctaaagtgtgtgaagtgtgacaAAAACATCAGGAGTGATACAGGATGGGTTTGAGGATTGCTCTTTATCTTCATCTCTTGTGTATATTCAGCAAAGCTGCTTCCAAAAAAGGTGTAAAATGTGGAGGAATCCTCGCTCCTTCCTCCAGCGGCAACATCTCCAGCCCTAATTTCCCAGGTCTTTACCCGTACAACGTCGATTGCTCCTGGCTGATCGTGGTGTCCGAGGGTTCGTCCGTGCTGCTGACGTTCCACCACTTTGAGCTGGAGTACCATGCCGACTGCGCCTACGACTACATCAAAATCTACAACGGCGTCTCAGAGGACGAGGGCAACCTTCTGGGGAAGTTCTGTGGAGACGCCTCGCCTCCTCAGTTCAGCTCCTCCTGGAACATCATGTCCATCATCTTCCACTCCGACCGCCACGTGGCTCATAAAGGCTTCCTGGTGGGATACAAGAAAGATACGTGTGGCGGCGTGTTGACGGGACTCTCGGGTGTAATCTCCAGCCCGGGATACCCGCACGAGTACAGTAATAACGCCGAGTGCTCGTGGACGATCCACGTGTCCAACCACAGCGTTGTCACTCTGGTCTTCCTCGACTTCCAGCTGGAGAATAACGAAGGCTGTAACTTTGACTACATCGCACTGTTCGACGGCCCGACAGTCCAACACCGTCACATCGGGAATTACTGCGGTAACCAACAACCGCCCAACACCGTCTCCACGTCCAATCAGCTGCTGATCGTGTTTAAATCAGACTTTAACATTGGAGGAAGAGGATTTAAGGCTCATTATTACTCAGGCGAGTGCCAGCAGGTGCTGAAAGCGATCAGCGGGAACTTCACCAGCCCCAGTTACCCCAACATCTACCCCAATAACATGAACTGCCACTGGAGCATGGTTCTGCCCCCAGGCTACAGGATCAAACTGTTCTTCCCGGTCATGGAGCTGGAGGATCAGAACAGTCTGAGCGACTCCTGCGATTTCGACTCCGTAGCTGTGTACGATGGCGACAGTGAGACGGATGCCTTGCTGGGACGCTGGTGTGGGGCTGAACAGCCTCCGCCTCTGACGTCGAGGGCAAACAAACTGCTGGTGGTCCTCAACACGGACCGGAACGTTGCGTTCAGGGGTTTCTCTGCTTCCTATACGGGAGTGGTACCAGTGAATGTGAGCTGCACCAGAACCGAGTTTCAGATCCAGATCTCCCAGCAGGCTTTGCCCCAGCTGGACCGCGACAGTGTGTATCTCGGAAACCCGTCCTGTTCGGCACAGATGACGGCGACGAGCTACAAGATTCTGGCTCGCTTCGTCAACTGTGGAACTGCTGGTCAGAAACGTCACAACATCACCATGCTGGTGAACACGCTCTACATCGACTTCTCCGACGGAAAACAGCAGAGCGTTCAGGAGTACGAGGTGCAGTGCGATGCGCAGAGGAAGGTGGCGTCGGTCAGCATCATCTCAGCGGAGGATCGGATCCGGATGAACGAACTCGCCCGACTCGCCGAGGAGTCGAAGAGCCTGGAGAGCGCACAGAGAGCCGAGCCTGAAGCTCACGAGACCAGCGACATCGTCTTCATCAGCGTCTGCGTGCTGGCCGTCATCCTCATGCTCATCGCCATCGTGTGGCTCGTGCTCCTCTAGAGACTCAGATGGCTTTTAACCCTtacatatatatctatatacatgACAGGTTAAATCCGATCTTTCTGTCTTCACAGTTCGAGTTCATGTCTTCGAGTCAaggcaaattttatttataaagcacgtTTAAAGACAACAGTACATgatccaaagtgctgtacataacatcataaaacatcacattaaataacaTCATAAGACAAAGAATAAAATCTGACTCAGTGTGAACTCTTAAAATGAACTGCAAACCACAGcactattctgattggtcatcaggtgttgattaattctctagaacagcagctctgacagtagcgcaggtttatattaatg

Function

symbol description
cdcp2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CDCP2 (CUB domain containing protein 2).

NR:

description
CUB domain-containing protein 2, partial

GO: NA

KEGG:

id description
K24792 CDCP2; CUB domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946356.2 True 2967 mRNA 0.49 6 18995557 19002207

Neighbor

gene id symbol gene type direction distance location
fam151a fam151a coding upstream 58767 18931059 ~ 18936790 (+)
cryz cryz coding upstream 69984 18919067 ~ 18925573 (+)
sdr16c5a LOC108280727 coding upstream 185347 18799203 ~ 18810210 (+)
penka LOC108280728 coding upstream 197696 18791345 ~ 18797861 (+)
bpnt2 impad1 coding upstream 232069 18756729 ~ 18763488 (+)
cdc7 cdc7,LOC102782901 coding downstream 4320 19006527 ~ 19014193 (+)
rpap2 rpap2 coding downstream 25674 19027881 ~ 19042630 (+)
rpl5a rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486 coding downstream 71500 19073707 ~ 19077866 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding downstream 92715 19094922 ~ 19106149 (+)
ccdc18 ccdc18 coding downstream 108081 19110288 ~ 19136781 (+)
G322817 mrpl37 non-coding upstream 934 18993758 ~ 18994623 (+)
G322802 NA non-coding upstream 36238 18959083 ~ 18959319 (+)
G322747 NA non-coding upstream 180740 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 182709 18812503 ~ 18812848 (+)
G322744 NA non-coding upstream 183222 18811105 ~ 18812335 (+)
G322957 NA non-coding downstream 105179 19107386 ~ 19109334 (+)
G323104 NA non-coding downstream 432023 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 510517 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 580110 19582317 ~ 19583323 (+)
G323240 NA non-coding downstream 641616 19643823 ~ 19644570 (+)
ssbp3a ssbp3,ssbp3a other upstream 10475 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 124197 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 565535 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 768324 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1329344 17589072 ~ 17666213 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 202451 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 311653 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1127046 20129253 ~ 20281067 (+)
G323534 NA other downstream 1436495 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1635377 20637584 ~ 20663819 (+)

Expression


Co-expression Network